No definition available.
Malignant neoplasm of oropharynx, excluding all cancers (controls excluding all cancers)
C3_OROPHARYNG_EXALLC
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
169 |
4. Check minimum number of eventsNone |
169 |
5. Include endpointsNone |
169 |
6. Filter based on genotype QC (FinnGen only) |
169 |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE_EXALLC
Extra metadata
- First used in FinnGen datafreeze
- DF12
Similar endpoints
↥List of similar endpoints to
Malignant neoplasm of oropharynx, excluding all cancers (controls excluding all cancers)
based on the number of shared cases.
Similar with more cases:
- Malignant neoplasm of oropharynx, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm of head and neck, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm, wide definition for exclusion
- Malignant neoplasm, wide definition for exclusion, excluding all cancers (controls excluding all cancers)
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 169 | 56 | 113 |
| Unadjusted period prevalence (%) | 0.04 | 0.02 | 0.05 |
| Median age at first event (years) | 64.23 | 61.26 | 65.70 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 50
- Matched controls
- 498
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
130
Kela drug reimbursment
Malignant tumour
+∞
47.8
38
*
JDB10
NOMESCO Finland
Percutaneous gastrostomy
388.8
34.5
31
*
504
Kela drug reimbursment
Conditions requiring daily forced enteral nutrition
710.7
34.3
30
*
WF002
NOMESCO Finland
Radical radiotherapy
563.2
30.2
27
*
A03FA01
ATC
metoclopramide; systemic, rectal
36.6
24.7
34
27
N02AA05
ATC
oxycodone; systemic
33.4
23.5
33
27
R4190
NOMESCO Finland
Nutritional therapy
68.7
22.6
25
7
8070/3-C10.9
ICD-O-3
Squamous cell carcinoma, NOS, of oropharynx, NOS
+∞
21.4
19
*
WB103
NOMESCO Finland
Simple adjuvant cytostatic therapy
+∞
21.4
19
*
C10.3
ICD-10 Finland
Malignant neoplasm: Posterior wall of oropharynx
+∞
18.9
17
*
H02AB02
ATC
dexamethasone; systemic
250.2
17.7
17
*
ZX090
NOMESCO Finland
Other technic of radiotherapy
+∞
16.6
15
*
UJC01
NOMESCO Finland
Scopy of lower throat
+∞
16.6
15
*
A04AA01
ATC
ondansetron; systemic, rectal
54.5
15.7
18
5
ZX012
NOMESCO Finland
Radiotherapy with large shaped fields - isocentric therapy
+∞
15.4
14
*
YA1VG
NOMESCO Finland
MRI examination of head and neck with high intesity magnet for dose design of radiotherapy
+∞
14.2
13
*
YA1CD
NOMESCO Finland
Very extensive CT examination of head and neck for dose design of radiotherapy
+∞
14.2
13
*
Z50.8
ICD-10 Finland
Care involving use of other rehabilitation procedures
24.9
12.3
17
10
C10.0
ICD-10 Finland
Malignant neoplasm: Vallecula
+∞
10.8
10
*
WZC00
NOMESCO Finland
Planning of intervention or health care consultation
8.2
10.7
31
83
XX3DW
NOMESCO Finland
Time consuming IT work
23.0
10.7
15
9
EBA15
NOMESCO Finland
Extraction of large number of teeth
27.0
10.5
14
7
EN1BD
NOMESCO Finland
Very extensive CT examination of mouth and soft tissues of neck
34.2
10.4
13
5
C10.8
ICD-10 Finland
Malignant neoplasm: Overlapping lesion of oropharynx
+∞
9.7
9
*
GBB00
NOMESCO Finland
Tracheostomy
30.8
9.4
12
5
SAA03
NOMESCO Finland
Extended examination of mouth
6.4
8.8
34
124
GD1BD
NOMESCO Finland
Thorax extensive CT-examination
18.9
8.8
13
9
WF003
NOMESCO Finland
Adjuvant radiotherapy
107.4
8.7
9
*
EP1DG
NOMESCO Finland
Very extensive examination of soft tissue of neck with high intesity magnet
+∞
8.6
8
*
C77.0
ICD-10 Finland
Secondary and unspecified malignant neoplasm: Lymph nodes of head, face and neck
+∞
8.6
8
*
C01
ICD-10 Finland
Malignant neoplasm of base of tongue
+∞
8.6
8
*
ENA10
NOMESCO Finland
Biopsy of pharynx
+∞
8.6
8
*
EP1AE
NOMESCO Finland
Neck ultrasound examination
30.5
7.9
10
*
EP1CG
NOMESCO Finland
Extensive MRI examination of soft tissue of neck with high intesity magnet
93.4
7.6
8
*
PJD71
NOMESCO Finland
Extended sparing excision of cervical lymph nodes
+∞
7.5
7
*
YA1BD
NOMESCO Finland
Extensive CT examination of head and neck for dose design of radiotherapy
+∞
7.5
7
*
D10.9
ICD-10 Finland
Benign neoplasm: Pharynx, unspecified
+∞
7.5
7
*
C10.2
ICD-10 Finland
Malignant neoplasm: Lateral wall of oropharynx
+∞
7.5
7
*
GDA98
NOMESCO Finland
Other bronchoscopic incision, excision of lesion or repair of lung
+∞
7.5
7
*
R4110
NOMESCO Finland
Physiotherapy
5.6
7.1
25
76
A02BC05
ATC
esomeprazole; systemic
5.2
7.0
34
144
R2130
NOMESCO Finland
Counselling and guidance which enhance independent living
8.8
7.0
15
23
N02AB03
ATC
fentanyl; nasal, sublingual, transdermal
26.8
6.9
9
*
WX402
NOMESCO Finland
General anaesthesia
6.6
6.7
18
39
GD1PA
NOMESCO Finland
X-ray examination of the lungs in one projection
8.8
6.6
14
21
Z51.5
ICD-10 Finland
Palliative care
21.4
6.5
9
5
WW500
NOMESCO Finland
Blood transfusion
31.0
6.4
8
*
JN4BD
NOMESCO Finland
Extensive body CT
12.4
6.4
11
11
8070/3-C10.3
ICD-O-3
Squamous cell carcinoma, NOS, of posterior wall of oropharynx
+∞
6.4
6
*
Z3226
NOMESCO Finland
Physiotherapist
5.5
6.2
20
54
A06AD11
ATC
lactulose; oral
6.2
6.1
17
38
R13
ICD-10 Finland
Dysphagia
13.5
6.1
10
9
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: C3_OROPHARYNG_EXALLC – Malignant neoplasm of oropharynx, excluding all cancers (controls excluding all cancers)
GWS hits: 1
This endpoint is excluded (different definition than used in FinnGen).