No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
130 |
4. Check minimum number of eventsNone |
130 |
5. Include endpointsNone |
130 |
6. Filter based on genotype QC (FinnGen only) |
130 |
Control definitions (FinnGen only)
- Control exclude
- AB1_VIRAL_CNS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Tick-borne viral encephalitis
based on the number of shared cases.
Similar with more cases:
- Viral infections of the central nervous system
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 1177 | 458 | 710 |
| Only index persons | 1085 | 435 | 650 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.02 | 0.01 | 0.02 |
| Only index persons | 0.02 | 0.02 | 0.02 |
| Median age at first event (years) | |||
| Whole population | 49.62 | 50.46 | 48.87 |
| Only index persons | 50.10 | 50.59 | 49.77 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 130 | 64 | 66 |
| Unadjusted period prevalence (%) | 0.03 | 0.02 | 0.03 |
| Median age at first event (years) | 54.11 | 54.54 | 53.70 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 118
- Matched controls
- 1182
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A84.8
ICD-10 Finland
Other tick-borne viral encephalitis
+∞
55.7
49
*
A84.9
ICD-10 Finland
Tick-borne viral encephalitis, unspecified
+∞
52.0
46
*
A86
ICD-10 Finland
Unspecified viral encephalitis
+∞
28.3
26
*
TAB00
NOMESCO Finland
Lumbar puncture
18.6
20.0
31
22
XA800
NOMESCO Finland
Neuropsychological investigation
17.1
17.6
28
21
A87.9
ICD-10 Finland
Viral meningitis, unspecified
+∞
16.0
15
*
R50.9
ICD-10 Finland
Fever, unspecified
5.4
11.1
36
88
G04.9
ICD-10 Finland
Encephalitis, myelitis and encephalomyelitis, unspecified
+∞
9.5
9
*
A69.2
ICD-10 Finland
Lyme disease
8.7
9.4
20
27
R4120
NOMESCO Finland
Occupational therapy
7.3
8.8
21
34
A84.1
ICD-10 Finland
Central European tick-borne encephalitis
+∞
8.4
8
*
0632A
ICD-9 Finland
Tick-borne viral encephalitis, Central European encephalitis[PUUTIAISEN VÄLITTÄMÄ ENKEFALIITTI (KUMLINGE)]
+∞
8.4
8
*
AA1AD
NOMESCO Finland
CT of head and brain
3.4
7.6
43
170
AA1CG
NOMESCO Finland
Extensive MRI examination of brain with high intensity magnet
6.0
7.4
20
39
R4150
NOMESCO Finland
Neuropsychological rehabilitation
28.3
6.3
8
*
Mortality – FinRegistry
↥Association
Association between endpoint AB1_TICK_BORNE_ENCEPHALITIS and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have AB1_TICK_BORNE_ENCEPHALITIS.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: AB1_TICK_BORNE_ENCEPHALITIS – Tick-borne viral encephalitis
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
Loading data