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This is a non-core endpoint: only basic statistics are computed.

Other cystitis, drug-induced

Endpoint Browser

OTHER_CYSTIT

Endpoint definition

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Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ATC codes for adverse effects of Drugs — ANY
  • Hospital discharge: ICD-10 — N30.8#

1 out of 7 registries used, show all original rules.

10

4. Check minimum number of events

None

10

5. Include endpoints

None

10

6. Filter based on genotype QC (FinnGen only)

10

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
C
First used in FinnGen datafreeze
DF5

Case counts by codes

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FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

This endpoint is excluded (not available in FinRegistry).

-FinnGen-

Key figures

All Female Male
Number of individuals 10 10 -
Unadjusted period prevalence (%) 0.00 0.00 -
Median age at first event (years) 39.91 39.91 -

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

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OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
0
29
0.00
1.22
0.0
1.8
—
95.2
—
0
14
(46235355) HIV 1 and 2 tests - Meaningful Use set
0
26
0.00
0.95
0.0
1.7
—
—
—
0
0
(42870588) Differential panel, method unspecified - Blood
0
23
0.00
0.93
0.0
4.1
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
5
27
2.68
0.82
3.4
2.3
—
—
—
0
0
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
0
15
0.00
0.45
0.0
1.3
—
—
—
0
0
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
0
16
0.00
0.45
0.0
1.5
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
0
14
0.00
0.45
0.0
1.6
—
—
—
0
0
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
0
12
0.00
0.22
0.0
3.8
—
2.1
—
0
7
(3037467) Urinalysis macro (dipstick) panel - Urine
5
60
0.67
0.13
9.8
4.9
—
—
—
0
0
(3043109) Cytology report of Tissue fine needle aspirate Cyto stain
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3019145) Choriogonadotropin.beta subunit free [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3028026) IgM [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.6
—
1.1
—
0
5
(3050129) First trimester maternal screen panel - Serum or Plasma
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood
0
5
0.00
0.00
0.0
4.6
—
1.2
—
0
5
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.7
—
—
—
0
0
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.0
—
—
—
0
0
(3005719) IgG [Mass/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.7
—
8.2
—
0
6
(3022145) Colonoscopy Study observation
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3021879) Hepatitis B virus core Ab [Presence] in Serum
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(40768793) Breast Pathology biopsy report
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3000492) Spirometry study
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
0
7
0.00
0.00
0.0
6.6
—
—
—
0
0
(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
0
7
0.00
0.00
0.0
5.9
—
—
—
0
0
(40761536) Microorganisms panel - Urine sediment
0
6
0.00
0.00
0.0
2.7
—
—
—
0
0
(4035726)
0
8
0.00
-0.00
0.0
1.4
—
—
—
0
0

Mortality – FinRegistry

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This endpoint is excluded (not available in FinRegistry).

Relationships between endpoints

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Index endpoint: OTHER_CYSTIT – Other cystitis, drug-induced

GWS hits: -

This endpoint is excluded (not available in FinRegistry).