This is a non-core endpoint: only basic statistics are computed.
Dietary selenium deficiency
E4_SELE_DEF
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
5 |
4. Check minimum number of eventsNone |
5 |
5. Include endpointsNone |
5 |
6. Filter based on genotype QC (FinnGen only) |
5 |
Control definitions (FinnGen only)
- Control exclude
- E4_NUTRIDEF
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- E50-E64
- Name in latin
- Deficientia selenii diaetaria
Similar endpoints
↥List of similar endpoints to
Dietary selenium deficiency
based on the number of shared cases.
Similar with more cases:
- Other nutritional deficiencies
- Parasetamol
- GASTRO-related operations
- Any gastric operation
- Endocrine, nutritional and metabolic diseases
Similar with less cases:
None
Case counts by codes
↥FinnGen case counts by registry codes:
Not enough data for upset plot.
Not enough data for upset table.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 44 | 24 | 19 |
| Only index persons | 31 | 18 | 13 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.00 | 0.00 | 0.00 |
| Only index persons | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | |||
| Whole population | 62.68 | 68.80 | 53.80 |
| Only index persons | 61.36 | 66.81 | 53.80 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 5 | - | - |
| Unadjusted period prevalence (%) | 0.00 | - | - |
| Median age at first event (years) | 56.53 | - | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3013707) Erythrocyte sedimentation rate by Westergren method
5
29
+∞
0.84
6.2
3.0
mm/h
6.8
12.0
—
5
24
(3037467) Urinalysis macro (dipstick) panel - Urine
5
32
+∞
0.80
2.8
3.8
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
0
11
0.00
0.24
0.0
3.6
—
—
—
0
0
(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma
0
11
0.00
0.24
0.0
3.1
—
0.8
—
0
6
(3003338) MCHC [Mass/volume]
5
39
+∞
0.24
26.8
26.1
g/l
335.6
331.3
—
5
39
(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma
5
40
+∞
0.24
5.6
4.7
mmol/l
1.6
1.6
—
5
35
(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma
5
38
+∞
0.24
9.4
10.9
u/l
67.4
88.3
—
5
33
(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)
5
43
+∞
0.00
13.8
17.5
ml/min/173m2
76.8
85.4
—
5
34
(3016502) Oxygen saturation in Arterial blood
0
8
0.00
0.00
0.0
11.4
—
96.7
—
0
8
(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma
5
42
+∞
0.00
7.6
5.3
mmol/l
2.1
2.7
—
5
37
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3002173) Hemoglobin [Mass/volume] in Arterial blood
0
6
0.00
0.00
0.0
14.7
—
117.5
—
0
6
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
0
5
0.00
0.00
0.0
15.8
—
0.6
—
0
5
(3000494) Fungus identified in Specimen by Culture
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3003458) Phosphate [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
6.6
—
1.0
—
0
7
(40761511) CBC panel - Blood by Automated count
5
44
+∞
0.00
15.6
19.0
—
—
—
0
0
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
0
5
0.00
0.00
0.0
15.8
—
1.0
—
0
5
(3025941) Bacteria identified in Stool by Culture
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3007853) Bacteria identified in Skin by Aerobe culture
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.8
—
266.8
—
0
5
(40768797) Stomach Pathology biopsy report
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥Association
Association between endpoint E4_SELE_DEF and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have E4_SELE_DEF.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: E4_SELE_DEF – Dietary selenium deficiency
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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