info icon

Any gastric operation

GAST_OPER

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

473681

1. Apply sex-specific rule

None

473681

2. Check conditions

None

473681

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Operations: NOMESCO codes ^J

1 out of 7 registries used, show all original rules.

191680

4. Check minimum number of events

None

191680

5. Include endpoints

None

191680

6. Filter based on genotype QC (FinnGen only)

184409

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

First used in FinnGen datafreeze
DF3

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 184409 98710 85699
Unadjusted period prevalence (%) 40.75 38.77 43.04
Median age at first event (years) 56.20 52.63 60.32

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
636
Matched controls
3945
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
JN3AE
NOMESCO Finland
Abdominal ultrasound examination
+∞
217.4
232
*
R10.4
ICD-10 Finland
Other and unspecified abdominal pain
4.9
63.9
291
575
K35.9
ICD-10 Finland
Acute appendicitis, unspecified
52.2
44.0
61
8
GD1AA
NOMESCO Finland
Thorax X-ray examination
5.7
41.2
142
189
K40.9
ICD-10 Finland
Unilateral or unspecified inguinal hernia, without obstruction or gangrene
39.4
39.9
58
10
JN3AA
NOMESCO Finland
Abdominal X-ray examination without contrast
+∞
39.2
45
*
WX408
NOMESCO Finland
General anesthesy, balanced
5.0
38.6
152
235
ZXD05
NOMESCO Finland
Urgent procedure
4.5
37.7
166
288
ZXE00
NOMESCO Finland
One hour or less
3.6
34.2
199
440
JEA00
NOMESCO Finland
Appendectomy
+∞
33.9
39
*
ZXE10
NOMESCO Finland
More than one and less than three hours
4.2
33.3
154
277
UJD10
NOMESCO Finland
Esophagoscopy, gastroscopy and duodenoscopy
5.2
32.9
121
171
JKA21
NOMESCO Finland
Laparoscopic cholecystectomy
+∞
32.1
37
*
JN1AE
NOMESCO Finland
Ultrasound examination of upper part of abdomen
+∞
32.1
37
*
ZXD10
NOMESCO Finland
Scheduled procedure
3.5
29.5
179
402
UJF32
NOMESCO Finland
Coloscopy
7.2
29.2
81
78
N02BE01
ATC
paracetamol; systemic, rectal
2.6
28.2
356
1284
JEA01
NOMESCO Finland
Laparoscopic appendectomy
+∞
27.7
32
*
JAB30
NOMESCO Finland
Repair of inguinal hernia using prosthetic material
+∞
26.9
31
*
WX404
NOMESCO Finland
Intravenous generell anesthesy
5.2
26.8
97
133
JN3AD
NOMESCO Finland
Abdominal CT examination
+∞
26.0
30
*
A02BC02
ATC
pantoprazole; systemic
3.0
24.7
185
476
R10.3
ICD-10 Finland
Pain localized to other parts of lower abdomen
3.3
22.3
138
307
JAH00
NOMESCO Finland
Laparotomy
+∞
21.6
25
*
LC2BE
NOMESCO Finland
Transvaginal ultrasound examination of uterus, parametria and lower abdomen
4.4
21.3
88
138
K80.2
ICD-10 Finland
Calculus of gallbladder without cholecystitis
10.8
20.4
44
27
JN3BD
NOMESCO Finland
Extensive abdominal CT
+∞
19.9
23
*
Z3231
NOMESCO Finland
Registered nurse
2.8
19.4
153
399
GD1QA
NOMESCO Finland
Supine thorax X-ray examination
5.7
18.5
59
69
WX402
NOMESCO Finland
General anaesthesia
4.3
18.2
76
120
TPH04
NOMESCO Finland
Cathetrisation of vein
3.8
17.2
83
150
GD1UA
NOMESCO Finland
Thorax X-ray examination outside radiological department
6.8
16.8
47
46
Z2221
NOMESCO Finland
Medical doctor
3.1
16.1
102
227
JFB30
NOMESCO Finland
Right hemicolectomy
+∞
15.5
18
*
JKA20
NOMESCO Finland
Cholecystectomy
+∞
15.5
18
*
GD1PA
NOMESCO Finland
X-ray examination of the lungs in one projection
5.2
15.4
53
68
A02BC05
ATC
esomeprazole; systemic
3.0
15.0
103
241
JAH01
NOMESCO Finland
Laparoscopy
+∞
14.7
17
*
JN2AE
NOMESCO Finland
Ultrasound examination of lower part of abdomen without contrast
+∞
14.7
17
*
JAF10
NOMESCO Finland
Repair of umbilical hernia
+∞
14.7
17
*
A02BC01
ATC
omeprazole; systemic
2.6
14.4
127
349
ZXE20
NOMESCO Finland
More than three and less than five hours
4.3
14.3
58
89
R10.0
ICD-10 Finland
Acute abdomen
9.4
14.2
32
22
Z3226
NOMESCO Finland
Physiotherapist
3.2
14.1
85
183
J01DB01
ATC
cefalexin; oral
1.9
13.9
379
1700
TLC00
NOMESCO Finland
Insertion of intrauterine device
6.9
13.9
38
36
XF600
NOMESCO Finland
Bloodpressure measurement
4.3
13.8
57
89
JAL21
NOMESCO Finland
Laparoscopic excision or destruction of lesion of peritoneum
+∞
13.8
16
*
JAB00
NOMESCO Finland
Division and ligature of inguinal hernia sac
+∞
13.8
16
*
JN3DE
NOMESCO Finland
Abdominal extensive ultrasoudn examination with blood flow measurements after transplantation
+∞
13.8
16
*
NK6MA
NOMESCO Finland
Measurement of bone age from hand and elbow using X-ray
5.6
13.6
43
50
WX882
NOMESCO Finland
High dependency care
11.3
13.6
28
16
XF400
NOMESCO Finland
ECG with 12 standard connections
2.8
12.9
95
232
A09
ICD-10 Finland
Other gastroenteritis and colitis of infectious and unspecified origin
2.4
12.9
137
412
JFA15
NOMESCO Finland
Endoscopic polypectomy in colon
+∞
12.9
15
*
N80.3
ICD-10 Finland
Endometriosis of pelvic peritoneum
17.6
12.7
22
8
R4110
NOMESCO Finland
Physiotherapy
2.9
11.5
81
192
R10.1
ICD-10 Finland
Pain localized to upper abdomen
3.3
11.5
63
126
AA1AD
NOMESCO Finland
CT of head and brain
3.9
11.5
52
89
P01AB01
ATC
metronidazole; oral, rectal
2.6
11.2
91
236
JN1CG
NOMESCO Finland
Extensive MRI examination of upper part of abdomen with high intensity magnet
+∞
11.2
13
*
JN4BD
NOMESCO Finland
Extensive body CT
+∞
11.2
13
*
JFB00
NOMESCO Finland
Partial resection of small intestine
+∞
11.2
13
*
ZXA00
NOMESCO Finland
Right side
2.8
11.1
80
194
R50.9
ICD-10 Finland
Fever, unspecified
2.5
11.1
100
276
ZX120
NOMESCO Finland
Intravenous
5.9
10.7
32
35
K56.6
ICD-10 Finland
Other and unspecified intestinal obstruction
8.4
10.6
25
19
TPH90
NOMESCO Finland
Removal of fixed intravenous catheter
21.6
10.5
17
5
N80.9
ICD-10 Finland
Endometriosis, unspecified
15.1
10.5
19
8
LC2AE
NOMESCO Finland
Ultrasound examination of uterus and parametria
3.7
10.4
49
87
A07EA06
ATC
budesonide; oral, local oral
12.8
10.4
20
10
J01MA02
ATC
ciprofloxacin; systemic
2.1
10.4
134
439
JF1CG
NOMESCO Finland
Extensive MRI of small bowel
+∞
10.3
12
*
JHB30
NOMESCO Finland
Rubber band ligature of haemorrhoids or prolapse of mucosa
+∞
9.5
11
*
JAB10
NOMESCO Finland
Repair of inguinal hernia
+∞
9.5
11
*
D01
ICPC
Abdominal pain/cramps general
2.1
9.4
127
421
R4190
NOMESCO Finland
Nutritional therapy
4.6
9.3
34
48
TPH15
NOMESCO Finland
Insertion of central venous catheter through external or internal jugular vein
7.0
9.2
24
22
K80.0
ICD-10 Finland
Calculus of gallbladder with acute cholecystitis
7.0
9.2
24
22
K59.00
ICD-10 Finland
Constipation caused by slow bowel passage (SCT)
14.5
8.8
16
7
TLC02
NOMESCO Finland
Simple extraction of IUD
14.5
8.8
16
7
UJF45
NOMESCO Finland
Flexible sigmoidoscopy with biopsy
12.0
8.7
17
9
R53
ICD-10 Finland
Malaise and fatigue
2.1
8.7
119
398
R07.4
ICD-10 Finland
Chest pain, unspecified
2.5
8.7
73
192
Z2446
NOMESCO Finland
Social worker
3.0
8.6
52
112
504
Kela drug reimbursment
Conditions requiring daily forced enteral nutrition
27.4
8.6
13
*
K40.3
ICD-10 Finland
Unilateral or unspecified inguinal hernia, with obstruction, without gangrene
+∞
8.6
10
*
WX700
NOMESCO Finland
Respiratory and circulatory monitoring
3.1
8.6
49
102
Z01.0
ICD-10 Finland
Examination of eyes and vision
2.5
8.5
73
196
Z2445
NOMESCO Finland
Psychologist
3.1
8.4
50
106
H02AB09
ATC
hydrocortisone; systemic
8.0
8.4
20
16
N02AX02
ATC
tramadol; systemic, rectal
2.1
8.3
114
379
K62.3
ICD-10 Finland
Rectal prolapse
17.7
8.3
14
5
K85
ICD-10 Finland
Acute pancreatitis
17.7
8.3
14
5
L04AX01
ATC
azathioprine; systemic
6.7
8.2
22
21
A04AA01
ATC
ondansetron; systemic, rectal
5.1
8.2
27
34
ZXE04
NOMESCO Finland
Procedure duration 30 to 39 minutes
3.4
8.1
41
78
UKC02
NOMESCO Finland
Cystoscopy
3.2
8.1
45
92
A06AC01
ATC
ispaghula (psylla seeds); oral
2.3
8.0
85
252
ZXA10
NOMESCO Finland
Bilateral
2.4
8.0
74
206
UJF92
NOMESCO Finland
Capsular endoscopy
9.8
8.0
17
11
R03AC02
ATC
salbutamol; inhalant
1.7
8.0
226
966
WX002
NOMESCO Finland
Sedation and analgesia
3.3
7.9
41
80
UJF30
NOMESCO Finland
Ileoscopy through colon
5.9
7.9
23
25
D37.4
ICD-10 Finland
Neoplasm of uncertain or unknown behaviour: Colon
+∞
7.7
9
*
JN3CG
NOMESCO Finland
Extensive MRI examination of abdomen with high intensity magnet
+∞
7.7
9
*
JL5SB
NOMESCO Finland
Endoscopic retrograd cholangiopancreaticography
+∞
7.7
9
*
K80.4
ICD-10 Finland
Calculus of bile duct with cholecystitis
34.6
7.7
11
*
602
Kela drug reimbursment
Children's severe malnutrition
10.1
7.7
16
10
KC1EE
NOMESCO Finland
Ultrasound measurement of residual urine
5.3
7.6
24
29
Z31.5
ICD-10 Finland
Genetic counselling
5.3
7.6
24
29
D06
ICPC
Abdominal pain localized other
2.7
7.6
56
138
AA1CG
NOMESCO Finland
Extensive MRI examination of brain with high intensity magnet
3.8
7.5
33
56
EP1AE
NOMESCO Finland
Neck ultrasound examination
7.1
7.5
19
17
K80.5
ICD-10 Finland
Calculus of bile duct without cholangitis or cholecystitis
10.6
7.3
15
9
XKD00
NOMESCO Finland
Uroflowmetry
3.6
7.3
34
61
K65.0
ICD-10 Finland
Acute peritonitis
18.9
7.3
12
*
ZXA05
NOMESCO Finland
Left side
2.3
7.2
69
196
SPAT1100
SPAT
Long-term monitoring of blood pressure
7.7
7.1
17
14
K59.09
ICD-10 Finland
Constipation, unspecified
4.4
7.0
26
38
K57.3
ICD-10 Finland
Diverticular disease of large intestine without perforation or abscess
3.4
7.0
35
67
AA1BG
NOMESCO Finland
Standard MRI examination of brain with high intensity magnet
3.0
7.0
42
90
PG1DE
NOMESCO Finland
Other extensive ultrasound examination of artery
31.4
6.9
10
*
K83.0
ICD-10 Finland
Cholangitis
31.4
6.9
10
*
JKE02
NOMESCO Finland
Transduodenal endoscopic incision of common bile duct orifice
+∞
6.9
8
*
JN1BG
NOMESCO Finland
MRI examination of upper part of abodmen with high intensity magnet
+∞
6.9
8
*
JJ2AT
NOMESCO Finland
Biopsy of liver with ultrasound guidance
+∞
6.9
8
*
JN3DG
NOMESCO Finland
Very extensive MRI examination with high intensity magnet
+∞
6.9
8
*
127
Kela drug reimbursment
Transplant complication
56.5
6.8
9
*
H02AB06
ATC
prednisolone; systemic
1.8
6.8
135
515
PH2AE
NOMESCO Finland
Ultrasound examination of lower leg veins
6.0
6.7
19
20
208
Kela drug reimbursment
Ulcerative colitis and Crohn's disease
6.0
6.7
19
20
C07AB07
ATC
bisoprolol; oral
1.9
6.7
119
435
NA1AD
NOMESCO Finland
Cervical spine CT examination
7.8
6.7
16
13
DM1QA
NOMESCO Finland
Paranasal sinuses X-ray examination in one projection
5.0
6.7
22
28
NE1AA
NOMESCO Finland
Pelvis X-ray examination
5.5
6.7
20
23
Z00.4
ICD-10 Finland
General psychiatric examination, not elsewhere classified
2.0
6.6
96
327
UJK02
NOMESCO Finland
ERCP
17.3
6.6
11
*
SPAT1306
SPAT
Counselling and guidance related to nutrition and weight management
2.0
6.5
94
318
ZY010
NOMESCO Finland
Hospital outpatient
2.4
6.5
60
167
TPH07
NOMESCO Finland
Cathetrisation of artery
4.4
6.5
24
35
J01CR02
ATC
amoxicillin and beta-lactamase inhibitor; systemic
1.6
6.5
276
1296
A07EC02
ATC
mesalazine; oral, rectal
5.3
6.4
20
24
J01.0
ICD-10 Finland
Acute maxillary sinusitis
2.0
6.4
88
292
K42.9
ICD-10 Finland
Umbilical hernia without obstruction or gangrene
12.6
6.4
12
6
IAZ97
NOMESCO Finland
Psychiatric consultation in another specialty
6.0
6.4
18
19
K51.9
ICD-10 Finland
Ulcerative colitis, unspecified
7.9
6.4
15
12
Z71.3
ICD-10 Finland
Dietary counselling and surveillance
3.3
6.4
33
65
V49.9
ICD-10 Finland
Car occupant [any] injured in unspecified traffic accident
4.7
6.4
22
30
WVA20
NOMESCO Finland
Medicine administration
10.3
6.4
13
8
R51.80
ICD-10 Finland
Headache
2.0
6.3
87
289
K43.9
ICD-10 Finland
Other and unspecified ventral hernia without obstruction or gangrene
21.0
6.3
10
*
Z01.8
ICD-10 Finland
Other specified special examinations
2.2
6.3
64
188
K59.0
ICD-10 Finland
Constipation
2.5
6.2
51
134
N05AH04
ATC
quetiapine; oral
2.0
6.2
90
306
ZXE13
NOMESCO Finland
Procedure duration 90 to 119 minutes
2.7
6.2
45
110
KH1AE
NOMESCO Finland
Urinary tract ultrasound examination
4.5
6.2
22
31
IEV99
NOMESCO Finland
Other psychiatric network intervention
5.7
6.2
18
20
A49.9
ICD-10 Finland
Bacterial infection, unspecified
3.3
6.2
31
60
W19
ICD-10 Finland
Unspecified fall
2.2
6.2
67
203
N05AH03
ATC
olanzapine; systemic
3.6
6.1
28
50
TPX10
NOMESCO Finland
Implantation of vascular injection port
13.9
6.1
11
5
D12.8
ICD-10 Finland
Benign neoplasm: Rectum
28.3
6.1
9
*
WX302
NOMESCO Finland
Thoracal epidural anesthesy
28.3
6.1
9
*
N06AB06
ATC
sertraline; oral
2.2
6.1
68
207
S89.9
ICD-10 Finland
Unspecified injury of lower leg
3.8
6.1
26
44
Z3229
NOMESCO Finland
Other healthcare associate professional
2.5
6.1
50
132
K52.9
ICD-10 Finland
Noninfective gastroenteritis and colitis, unspecified
4.0
6.0
24
38
M01AC06
ATC
meloxicam; systemic, rectal
2.2
6.0
64
192
JL5BG
NOMESCO Finland
MRI examinaiton of bile and pancreas ducts with high intesity magnet
+∞
6.0
7
*
JKE98
NOMESCO Finland
Other transduodenal endoscopic operation on bile duct or ampulla of Vater
+∞
6.0
7
*
SPAT1230
SPAT
Aid fitting and borrowing and monitoring of use
2.7
6.0
41
97

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: GAST_OPER – Any gastric operation

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).