This is a non-core endpoint: only basic statistics are computed.
Granuloma inguinale
AB1_GRANULO_INGUINALE
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
6 |
4. Check minimum number of eventsNone |
6 |
5. Include endpointsNone |
6 |
6. Filter based on genotype QC (FinnGen only) |
6 |
Control definitions (FinnGen only)
- Control exclude
- AB1_SEXUAL_TRANSMISSION
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Granuloma inguinale
based on the number of shared cases.
Similar with more cases:
- Infections with a predominantly sexual mode of transmission
- Certain infectious and parasitic diseases
- Anti-inflammatory and antirheumatic products, non-steroids
- Paracetamol of NSAID medication
- Any operation in hilmo
Similar with less cases:
None
Case counts by codes
↥FinnGen case counts by registry codes:
Not enough data for upset plot.
Not enough data for upset table.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 29 | 13 | 16 |
| Only index persons | 21 | 9 | 12 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.00 | 0.00 | 0.00 |
| Only index persons | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | |||
| Whole population | - | 43.53 | 43.83 |
| Only index persons | 38.66 | 34.03 | 42.13 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 6 | - | - |
| Unadjusted period prevalence (%) | 0.00 | - | - |
| Median age at first event (years) | 41.48 | - | - |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
0
22
0.00
0.78
0.0
1.5
—
107.0
—
0
8
(40760892) CBC W Ordered Manual Differential panel - Blood
0
16
0.00
0.49
0.0
12.8
—
—
—
0
0
(40758558) Short blood count panel - Blood
0
14
0.00
0.48
0.0
10.4
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
0
12
0.00
0.23
0.0
3.2
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
0
12
0.00
0.23
0.0
5.7
—
—
—
0
0
(3030467) Casts [#/volume] in Urine by Automated count
0
9
0.00
0.23
0.0
2.2
—
0.3
—
0
9
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
0
9
0.00
0.23
0.0
1.3
—
—
—
0
0
(3033658) Prothrombin time (PT) actual/Normal
0
13
0.00
0.23
0.0
2.7
—
92.5
—
0
13
(3000494) Fungus identified in Specimen by Culture
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3042936) Bacteria identified in Isolate by Culture
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3023520) Reticulocytes [#/volume] in Blood
0
6
0.00
0.00
0.0
3.8
—
66.8
—
0
6
(46235355) HIV 1 and 2 tests - Meaningful Use set
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3022145) Colonoscopy Study observation
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
0
5
0.00
0.00
0.0
2.6
—
—
—
0
0
(3002173) Hemoglobin [Mass/volume] in Arterial blood
0
5
0.00
0.00
0.0
4.0
—
107.2
—
0
5
(3012095) Magnesium [Moles/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
5.9
—
0.8
—
0
8
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
7.0
—
—
—
0
0
(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood
0
5
0.00
0.00
0.0
13.2
—
1.2
—
0
5
(3022217) INR in Platelet poor plasma by Coagulation assay
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3000492) Spirometry study
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3008152) Bicarbonate [Moles/volume] in Arterial blood
0
5
0.00
0.00
0.0
6.4
—
25.7
—
0
5
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.9
—
—
—
0
0
(3017143) Hepatitis C virus Ab [Presence] in Serum
0
8
0.00
0.00
0.0
2.4
—
—
—
0
0
(3017446) Testosterone [Moles/volume] in Serum or Plasma
0
7
0.00
0.00
0.0
1.3
—
12.3
—
0
7
(3013742) Prealbumin [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.8
—
0.2
—
0
5
(3023368) Bacteria identified in Blood by Culture
0
8
0.00
0.00
0.0
5.8
—
—
—
0
0
(3027946) Carbon dioxide [Partial pressure] in Arterial blood
0
5
0.00
0.00
0.0
3.0
—
4.9
—
0
5
(3022250) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma by Lactate to pyruvate reaction
0
8
0.00
0.00
0.0
8.1
—
233.1
—
0
8
(40761536) Microorganisms panel - Urine sediment
0
7
0.00
0.00
0.0
5.3
—
—
—
0
0
(3027801) Oxygen [Partial pressure] in Arterial blood
0
5
0.00
0.00
0.0
3.0
—
18.3
—
0
5
(3016502) Oxygen saturation in Arterial blood
0
5
0.00
0.00
0.0
4.0
—
92.1
—
0
5
(3026782) Osmolality of Urine
0
7
0.00
0.00
0.0
3.4
—
537.6
—
0
7
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥Association
Association between endpoint AB1_GRANULO_INGUINALE and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have AB1_GRANULO_INGUINALE.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: AB1_GRANULO_INGUINALE – Granuloma inguinale
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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