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This is a non-core endpoint: only basic statistics are computed.

Granuloma inguinale

EFO Endpoint Browser

AB1_GRANULO_INGUINALE

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A58
  • Hospital discharge: ICD-9 — 0992A
  • Hospital discharge: ICD-8 — 0992A
  • Cause of death: ICD-10 — A58
  • Cause of death: ICD-9 — 0992A
  • Cause of death: ICD-8 — 0992A

2 out of 7 registries used, show all original rules.

6

4. Check minimum number of events

None

6

5. Include endpoints

None

6

6. Filter based on genotype QC (FinnGen only)

6

Control definitions (FinnGen only)

Control exclude
AB1_SEXUAL_TRANSMISSION

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF5

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Not enough data for upset table.

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 29 13 16
Only index persons 21 9 12
Unadjusted period prevalence (%)
Whole population 0.00 0.00 0.00
Only index persons 0.00 0.00 0.00
Median age at first event (years)
Whole population - 43.53 43.83
Only index persons 38.66 34.03 42.13

-FinnGen-

Key figures

All Female Male
Number of individuals 6 - -
Unadjusted period prevalence (%) 0.00 - -
Median age at first event (years) 41.48 - -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

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OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
0
22
0.00
0.78
0.0
1.5
—
107.0
—
0
8
0
16
0.00
0.49
0.0
12.8
—
—
—
0
0
0
14
0.00
0.48
0.0
10.4
—
—
—
0
0
0
12
0.00
0.23
0.0
3.2
—
—
—
0
0
0
12
0.00
0.23
0.0
5.7
—
—
—
0
0
0
9
0.00
0.23
0.0
2.2
—
0.3
—
0
9
0
13
0.00
0.23
0.0
2.7
—
92.5
—
0
13
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
0.00
0.0
3.8
—
66.8
—
0
6
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
0
5
0.00
0.00
0.0
2.6
—
—
—
0
0
0
5
0.00
0.00
0.0
4.0
—
107.2
—
0
5
0
8
0.00
0.00
0.0
5.9
—
0.8
—
0
8
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
0.00
0.0
6.4
—
25.7
—
0
5
0
8
0.00
0.00
0.0
2.4
—
—
—
0
0
0
7
0.00
0.00
0.0
1.3
—
12.3
—
0
7
0
5
0.00
0.00
0.0
1.8
—
0.2
—
0
5
0
8
0.00
0.00
0.0
5.8
—
—
—
0
0
0
7
0.00
0.00
0.0
5.3
—
—
—
0
0
0
5
0.00
0.00
0.0
3.0
—
18.3
—
0
5
0
5
0.00
0.00
0.0
4.0
—
92.1
—
0
5
0
7
0.00
0.00
0.0
3.4
—
537.6
—
0
7
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0

Mortality – FinRegistry

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Association

Association between endpoint AB1_GRANULO_INGUINALE and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have AB1_GRANULO_INGUINALE.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

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Index endpoint: AB1_GRANULO_INGUINALE – Granuloma inguinale

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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