This is a non-core endpoint: only basic statistics are computed.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
14 |
4. Check minimum number of eventsNone |
14 |
5. Include endpointsNone |
14 |
6. Filter based on genotype QC (FinnGen only) |
14 |
Control definitions (FinnGen only)
- Control exclude
- AB1_VIRAL_CNS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Rabies
based on the number of shared cases.
Similar with more cases:
- Viral infections of the central nervous system
- Certain infectious and parasitic diseases
- Anti-inflammatory and antirheumatic products, non-steroids
- Paracetamol of NSAID medication
- Any operation in hilmo
Similar with less cases:
None
Case counts by codes
↥FinnGen case counts by registry codes:
Not enough data for upset plot.
Not enough data for upset table.
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 154 | 73 | 80 |
| Only index persons | 128 | 60 | 68 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.00 | 0.00 | 0.00 |
| Only index persons | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | |||
| Whole population | 41.82 | 49.87 | 34.04 |
| Only index persons | 38.52 | 46.78 | 31.23 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 14 | 7 | 7 |
| Unadjusted period prevalence (%) | 0.00 | 0.00 | 0.00 |
| Median age at first event (years) | 38.86 | 52.37 | 25.34 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3026782) Osmolality of Urine
5
21
3.12
1.20
4.8
2.0
mosm/kgh2o
369.2
477.6
—
5
14
(3041096) Erythrocytes [Presence] in Urine by Automated
7
36
2.87
1.19
4.4
3.2
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
0
29
0.00
1.13
0.0
4.5
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
5
27
2.31
0.77
3.8
4.1
—
—
—
0
0
(42868674) Cholesterol in HDL/Cholesterol.total [Molar ratio] in Serum or Plasma
0
20
0.00
0.66
0.0
5.2
—
33.0
—
0
9
(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma
0
19
0.00
0.66
0.0
1.3
—
11.7
—
0
7
(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma
0
22
0.00
0.65
0.0
6.5
—
—
—
0
0
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
0
22
0.00
0.65
0.0
1.8
—
2.0
—
0
11
(3021589) Normoblasts [#/volume] in Blood
7
43
2.24
0.64
14.3
12.4
e9/l
0.0
0.0
—
7
34
(3026008) Bacteria identified in Urine by Culture
5
33
1.79
0.47
2.8
2.7
—
—
—
0
0
(3019060) Gas panel - Arterial blood
0
14
0.00
0.44
0.0
5.1
—
—
—
0
0
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
7
50
1.79
0.41
4.4
4.4
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
5
71
0.54
0.40
12.8
2.8
—
—
—
0
0
(3013826) Glucose [Moles/volume] in Serum or Plasma
9
70
1.79
0.39
2.7
5.4
mmol/l
6.8
6.8
—
9
65
(3002582) Erythrocytes [#/volume] in Urine
5
39
1.44
0.26
6.0
1.9
e6/l
13.2
17.4
—
5
28
(3037467) Urinalysis macro (dipstick) panel - Urine
9
76
1.51
0.24
5.0
4.6
—
—
—
0
0
(3000991) Gas panel - Venous blood
0
11
0.00
0.22
0.0
3.0
—
—
—
0
0
(3000492) Spirometry study
0
11
0.00
0.22
0.0
1.5
—
—
—
0
0
(4035726)
0
11
0.00
0.22
0.0
1.4
—
—
—
0
0
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
(3020891) Body temperature
0
10
0.00
0.22
0.0
4.4
—
—
—
0
0
(3019225) pH of Specimen
0
10
0.00
0.22
0.0
5.5
—
—
—
0
0
(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood
0
10
0.00
0.22
0.0
3.6
—
1.2
—
0
10
(3014007) Fractional oxyhemoglobin in Arterial blood
0
12
0.00
0.22
0.0
4.0
—
93.2
—
0
12
(3022145) Colonoscopy Study observation
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
0
13
0.00
0.21
0.0
3.8
—
0.9
—
0
13
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
0
13
0.00
0.21
0.0
3.8
—
1.7
—
0
13
(40761535) Cells panel - Urine sediment
0
13
0.00
0.21
0.0
5.0
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
5
42
1.29
0.12
5.2
2.2
—
—
—
0
0
(3044889) 12 lead EKG panel
8
73
1.22
0.11
3.3
3.6
—
—
—
0
0
(3004119) Hemoglobin [Mass/volume] in Venous blood
0
9
0.00
0.00
0.0
7.0
—
122.4
—
0
9
(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood
0
8
0.00
0.00
0.0
2.1
—
1.5
—
0
8
(4010399)
0
9
0.00
0.00
0.0
1.3
—
—
—
0
0
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(3009445) Proteinase 3 Ab [Units/volume] in Serum
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
2.1
—
24.8
—
0
8
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
2.6
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
0
9
0.00
0.00
0.0
2.3
—
—
—
0
0
(3024889) Methemoglobin/Hemoglobin.total in Venous blood
0
8
0.00
0.00
0.0
2.1
—
0.8
—
0
8
(3000330) Specific gravity of Urine by Test strip
0
7
0.00
0.00
0.0
3.0
—
—
—
0
0
(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3037551) Cancer Ag 125 [Units/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
12.6
—
73.8
—
0
5
(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3013707) Erythrocyte sedimentation rate by Westergren method
9
91
0.97
0.00
1.8
4.1
mm/h
12.0
9.9
—
9
83
(1002224) Polysomnography panel
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3014051) Protein [Presence] in Urine by Test strip
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3004383) Neutrophil cytoplasmic Ab.classic [Titer] in Serum by Immunofluorescence
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3045414) Leukocytes [Presence] in Urine
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma
8
82
0.94
0.00
2.9
3.0
u/l
52.6
44.0
—
8
76
(3004716) Salmonella sp identified in Stool by Organism specific culture
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(36304997) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ and CD8+ T-cells [Units/volume] in Blood
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(3001019) Free T4 and TSH panel - Serum or Plasma
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3018095) Leukocytes [#/volume] in Urine
5
46
1.13
0.00
6.8
2.1
e6/l
7.3
45.4
—
5
32
(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood
0
7
0.00
0.00
0.0
3.6
—
55.8
—
0
7
(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis
0
5
0.00
0.00
0.0
1.0
—
0.0
—
0
5
(3004490) Bicarbonate [Moles/volume] standard in Capillary blood
0
7
0.00
0.00
0.0
2.3
—
23.7
—
0
7
Mortality – FinRegistry
↥Association
Association between endpoint AB1_RABIES and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have AB1_RABIES.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: AB1_RABIES – Rabies
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
Loading data