This is a non-core endpoint: only basic statistics are computed.

Benign neoplasm: Mesothelial tissue of pleura

Endpoint Browser

CD2_BENIGN_MESOTHELIAL_PLEURA

No definition available.

Suggest a new description

Endpoint definition

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Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D19.0& Cause of death: ICD-10 — D19.0& 2 out of 7 registries used, show all original rules.	10
4. Check minimum number of events None	10
5. Include endpoints None	10
6. Filter based on genotype QC (FinnGen only)	10

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2
Parent code in ICD-10: D19
Name in latin: Neoplasma benignum mesotheliale pleurae

NAME	CD2_BENIGN_MESOTHELIAL_PLEURA
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D190
HD_ICD_9	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D190
COD_ICD_9	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_8	$!$	The FinnGen clinical team has checked and no code can be used for this rule.
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

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List of similar endpoints to Benign neoplasm: Mesothelial tissue of pleura based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Benign neoplasm: Mesothelial tissue of pleura

Case counts by codes

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FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

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-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	103	59	43
Only index persons	79	47	32
Unadjusted period prevalence (%)
Whole population	0.00	0.00	0.00
Only index persons	0.00	0.00	0.00
Median age at first event (years)
Whole population	61.45	62.10	60.52
Only index persons	57.46	56.41	59.01

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	10	6	-
Unadjusted period prevalence (%)	0.00	0.00	-
Median age at first event (years)	56.64	57.74	-

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

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CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

No data available

LabWAS

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N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3020682) Albumin/Creatinine [Ratio] in Urine

0.00

1.22

0.0

3.7

—

3.19

—

(3026493) Urate [Moles/volume] in Serum or Plasma

0.00

0.93

0.0

2.4

—

348.78

—

(3041096) Erythrocytes [Presence] in Urine by Automated

2.43

0.55

2.0

2.7

—

(42870588) Differential panel, method unspecified - Blood

2.31

0.55

3.8

6.0

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

1.93

0.49

2.0

4.1

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

0.00

0.45

0.0

4.9

—

(21494755) Public health laboratory ask at order entry panel

0.00

0.45

0.0

1.2

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

1.77

0.30

2.8

6.2

1.15

1.21

mmol/l

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

0.00

0.23

0.0

1.7

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

0.00

0.23

0.0

2.2

—

0.98

—

(3001019) Free T4 and TSH panel - Serum or Plasma

0.00

0.23

0.0

1.0

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

0.00

0.23

0.0

1.7

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

0.00

0.22

0.0

3.5

—

1.46

—

(3037551) Cancer Ag 125 [Units/volume] in Serum or Plasma

0.00

0.0

2.4

—

200.80

—

(3006588) Cancer Ag 15-3 [Units/volume] in Serum or Plasma

0.00

0.0

4.8

—

24.60

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.0

2.2

—

(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood

0.00

0.0

4.6

—

55.84

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

0.00

0.0

1.8

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

0.00

0.0

2.2

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.0

2.2

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

+∞

0.00

13.1

18.2

73.00

72.09

umol/l

—

(43055554) Base excess.100% oxygenated [Moles/volume] standard in Capillary blood by calculation

0.00

0.0

1.5

—

1.77

—

(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3023024) Carbon dioxide [Partial pressure] in Capillary blood

0.00

0.0

1.5

—

5.03

—

(3020779) Urea [Moles/volume] in Serum or Plasma

0.00

0.0

4.0

—

7.07

—

(3004588) Protein electrophoresis panel - Serum or Plasma

0.00

0.0

1.0

—

(3022621) pH of Urine by Test strip

0.00

0.0

1.6

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

0.00

0.0

1.4

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

1.08

0.00

2.0

2.6

—

(40761535) Cells panel - Urine sediment

0.00

0.0

6.1

—

(3024354) Oxygen [Partial pressure] in Venous blood

0.00

0.0

3.3

—

5.23

—

(3014218) Bicarbonate [Moles/volume] standard in Arterial blood

0.00

0.0

5.0

—

26.17

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

0.00

0.0

1.0

—

(3030981) Hyaline casts [#/volume] in Urine by Automated count

0.00

0.0

2.4

—

0.03

—

(3021447) Carbon dioxide [Partial pressure] in Venous blood

0.00

0.0

2.8

—

5.64

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

0.00

0.0

8.0

—

(3005719) IgG [Mass/volume] in Serum or Plasma

0.00

0.0

2.0

—

8.10

—

(1002224) Polysomnography panel

0.00

0.0

1.0

—

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

0.00

-0.00

0.0

1.5

—

(3019225) pH of Specimen

0.00

-0.00

0.0

5.4

—

(3000991) Gas panel - Venous blood

0.00

-0.00

0.0

4.8

—

(3025941) Bacteria identified in Stool by Culture

0.00

-0.00

0.0

1.4

—

(3012544) pH of Venous blood

0.00

-0.00

0.0

2.9

—

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

0.00

-0.00

0.0

1.5

—

25.76

—

Mortality – FinRegistry

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Association

Association between endpoint CD2_BENIGN_MESOTHELIAL_PLEURA and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_MESOTHELIAL_PLEURA.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

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Index endpoint: CD2_BENIGN_MESOTHELIAL_PLEURA – Benign neoplasm: Mesothelial tissue of pleura

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

rg [CI]

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Benign neoplasm: Mesothelial tissue of pleura

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints