This is a non-core endpoint: only basic statistics are computed.
Contaminated medical or biological substances
VWXY20_CONTAMINAT_MEDICAL_BIOLO_SUBST
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
38 |
4. Check minimum number of eventsNone |
38 |
5. Include endpointsNone |
38 |
6. Filter based on genotype QC (FinnGen only) |
38 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF4
- Parent code in ICD-10
- Y6
Similar endpoints
↥List of similar endpoints to
Contaminated medical or biological substances
based on the number of shared cases.
Similar with more cases:
- Misadventures to patients during surgical and medical care
- Complications of medical and surgical care
- External causes of morbidity and mortality
- Injury, poisoning and certain other consequences of external causes
- Any operation in hilmo
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 38 | 14 | 24 |
| Unadjusted period prevalence (%) | 0.01 | 0.00 | 0.01 |
| Median age at first event (years) | 56.91 | 52.75 | 59.34 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
5
22
2.46
1.06
1.4
1.3
—
—
—
0
0
8
42
2.14
0.96
4.9
4.4
35.0
28.1
%
—
8
27
14
92
1.83
0.88
3.0
2.2
108.8
374.6
u/l
0.72
14
84
17
119
1.78
0.88
2.2
2.0
88.3
91.0
pmol/l
—
9
61
11
67
1.90
0.86
3.5
2.1
—
—
—
0
0
7
45
1.68
0.53
1.1
1.4
—
—
—
0
0
16
123
1.52
0.52
4.1
4.0
—
—
—
0
0
8
57
1.51
0.46
6.6
3.1
12.5
164.0
ng/l
—
8
44
14
175
0.68
0.44
3.6
2.9
—
—
—
0
0
9
66
1.47
0.43
3.6
1.7
2.6
2.8
mg/l
—
9
58
0
11
0.00
0.22
0.0
1.4
—
—
—
0
0
0
10
0.00
0.22
0.0
2.7
—
—
—
0
0
28
298
0.77
0.19
25.1
18.7
76.9
80.6
umol/l
0.48
28
298
6
54
1.13
0.09
1.5
2.0
—
—
—
0
0
9
100
0.87
0.07
2.0
3.7
—
—
—
0
0
11
115
0.94
0.00
3.7
3.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
0.0
—
0
8
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
0
9
0.00
0.00
0.0
1.0
—
0.0
—
0
9
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
0.0
—
0
8
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: VWXY20_CONTAMINAT_MEDICAL_BIOLO_SUBST – Contaminated medical or biological substances
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).