This is a non-core endpoint: only basic statistics are computed.
Benign neoplasm: Liver/bile ducts (ICD-9)
CD2_BENIGN_LIVER_BILE_9_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
|
1. Apply sex-specific ruleNone |
- |
2. Check conditionsNone |
|
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpointsNone |
- |
6. Filter based on genotype QC (FinnGen only)None |
- |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF2
Similar endpoints
↥List of similar endpoints to
Benign neoplasm: Liver/bile ducts (ICD-9)
based on the number of shared cases.
Similar with more cases:
- Benign neoplasm: Liver/bile ducts (ICD-9)
- Benign neoplasm: Small intestine
- Benign neoplasm: Small intestine
- Benign neoplasm of other and ill-defined parts of digestive system
- Benign neoplasm of other and ill-defined parts of digestive system
Similar with less cases:
Case counts by codes
↥FinnGen case counts by registry codes:
No upset plot: script not run.
No upset table: script not run.
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 33 | 25 | 8 |
| Unadjusted period prevalence (%) | 0.01 | 0.01 | 0.00 |
| Median age at first event (years) | 39.98 | 37.45 | 47.88 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
16
80
2.94
2.30
3.5
2.9
—
—
—
0
0
20
127
2.46
1.65
5.5
3.9
27.7
11.2
umol/l
0.44
20
119
5
17
3.27
1.41
9.2
5.0
24.3
25.4
mmol/l
—
5
17
12
65
2.33
1.35
1.2
1.7
17.9
23.1
nmol/l
0.41
12
54
6
26
2.59
1.25
4.2
7.1
5.0
6.3
kpa
—
6
26
15
97
2.00
1.06
3.4
3.6
—
—
—
0
0
8
47
1.92
0.88
2.4
2.3
2.5
2.4
mmol/l
—
8
39
15
105
1.79
0.79
4.4
3.8
29.9
25.7
ng/l
—
9
66
13
88
1.79
0.75
3.6
3.6
—
—
—
0
0
0
11
0.00
0.22
0.0
1.0
—
—
—
0
0
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
0
10
0.00
0.22
0.0
1.4
—
—
—
0
0
25
236
1.24
0.16
15.8
11.5
69.6
74.2
ml/min/173m2
0.28
16
178
13
134
0.95
0.00
3.3
2.6
—
—
—
0
0
0
9
0.00
0.00
0.0
1.3
—
—
—
0
0
0
9
0.00
0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
76.7
—
0
6
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
2.4
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.4
—
35.0
—
0
5
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_LIVER_BILE_9_EXALLC – Benign neoplasm: Liver/bile ducts (ICD-9)
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).