This is a non-core endpoint: only basic statistics are computed.
Malignant neoplasm of trachea, excluding all cancers (controls excluding all cancers)
C3_TRACHEA_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
35 |
4. Check minimum number of eventsNone |
35 |
5. Include endpointsNone |
35 |
6. Filter based on genotype QC (FinnGen only) |
35 |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE_EXALLC
Extra metadata
- First used in FinnGen datafreeze
- DF12
Similar endpoints
↥List of similar endpoints to
Malignant neoplasm of trachea, excluding all cancers (controls excluding all cancers)
based on the number of shared cases.
Similar with more cases:
- Malignant neoplasm of respiratory system and intrathoracic organs, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm, wide definition for exclusion
- Malignant neoplasm, wide definition for exclusion, excluding all cancers (controls excluding all cancers)
- Neoplasms
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 35 | 9 | 26 |
| Unadjusted period prevalence (%) | 0.01 | 0.00 | 0.01 |
| Median age at first event (years) | 63.83 | 49.39 | 68.83 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(4035726)
6
5
14.05
3.91
3.2
1.0
—
—
—
0
0
(3005702) Mycobacterium sp identified in Specimen by Organism specific culture
5
7
8.08
2.63
1.6
1.7
—
—
—
0
0
(3013707) Erythrocyte sedimentation rate by Westergren method
10
179
0.38
1.75
7.2
4.2
mm/h
7.7
12.9
—
10
158
(3002256) Pathology report gross observation
6
19
3.59
1.74
1.8
1.1
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
16
228
0.45
1.44
34.1
15.2
umol/l
73.1
88.6
1.82
16
228
(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma
8
143
0.43
1.34
4.4
3.4
u/l
75.8
49.4
—
8
131
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
5
20
2.74
1.19
2.0
1.6
—
—
—
0
0
(3013603) Prostate specific Ag [Mass/volume] in Serum or Plasma
6
114
0.43
1.08
2.2
4.3
ug/l
4.3
2.5
—
6
96
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
5
22
2.48
1.07
2.0
4.0
—
—
—
0
0
(42868674) Cholesterol in HDL/Cholesterol.total [Molar ratio] in Serum or Plasma
0
28
0.00
1.03
0.0
4.9
—
33.5
—
0
17
(3007853) Bacteria identified in Skin by Aerobe culture
6
29
2.28
0.94
3.3
1.7
—
—
—
0
0
(40761511) CBC panel - Blood by Automated count
18
229
0.56
0.84
25.5
12.8
—
—
—
0
0
(40760892) CBC W Ordered Manual Differential panel - Blood
7
43
1.78
0.72
3.7
3.8
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
10
64
1.79
0.67
6.8
4.3
—
—
—
0
0
(3000494) Fungus identified in Specimen by Culture
5
29
1.84
0.66
2.6
1.5
—
—
—
0
0
(3004119) Hemoglobin [Mass/volume] in Venous blood
0
19
0.00
0.62
0.0
2.6
—
132.0
—
0
19
(3037467) Urinalysis macro (dipstick) panel - Urine
11
151
0.60
0.61
3.5
4.0
—
—
—
0
0
(40768804) Tissue Pathology biopsy report
9
64
1.54
0.57
7.4
1.5
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
12
85
1.63
0.56
5.7
3.5
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
7
45
1.69
0.53
5.6
1.7
—
—
—
0
0
(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma
8
57
1.52
0.46
5.4
3.5
u/l
31.4
29.5
—
8
52
(3044640) Blood type and Crossmatch panel - Blood
8
58
1.49
0.46
6.5
2.0
—
—
—
0
0
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
0
15
0.00
0.42
0.0
2.3
—
—
—
0
0
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
0
15
0.00
0.42
0.0
2.3
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
15
0.00
0.42
0.0
1.2
—
—
—
0
0
(3000991) Gas panel - Venous blood
0
15
0.00
0.42
0.0
12.2
—
—
—
0
0
(3027238) Thyroperoxidase Ab [Units/volume] in Serum or Plasma
0
16
0.00
0.42
0.0
1.2
—
131.9
—
0
6
(3024889) Methemoglobin/Hemoglobin.total in Venous blood
0
16
0.00
0.42
0.0
2.1
—
0.6
—
0
16
(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood
0
16
0.00
0.42
0.0
3.4
—
45.5
—
0
16
(3013139) Helicobacter pylori Ag [Presence] in Stool
0
17
0.00
0.42
0.0
1.1
—
—
—
0
0
(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood
0
17
0.00
0.42
0.0
2.0
—
1.6
—
0
17
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
0
17
0.00
0.42
0.0
2.1
—
—
—
0
0
(3042936) Bacteria identified in Isolate by Culture
5
35
1.50
0.41
5.8
1.5
—
—
—
0
0
(3004588) Protein electrophoresis panel - Serum or Plasma
0
18
0.00
0.41
0.0
1.3
—
—
—
0
0
(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum
0
18
0.00
0.41
0.0
2.7
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
11
84
1.45
0.35
2.1
3.0
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
8
65
1.30
0.30
1.1
3.0
—
—
—
0
0
(42870588) Differential panel, method unspecified - Blood
5
73
0.63
0.29
9.0
5.1
—
—
—
0
0
(3006504) Eosinophils/100 leukocytes in Blood
8
102
0.72
0.25
8.1
4.9
%
3.0
2.9
—
8
90
(3022096) Basophils/100 leukocytes in Blood
8
101
0.73
0.25
8.1
4.8
%
0.8
0.6
—
8
89
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
0
11
0.00
0.22
0.0
1.4
—
—
—
0
0
(3027450) Sjogrens syndrome-B extractable nuclear Ab [Units/volume] in Serum
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
(3004490) Bicarbonate [Moles/volume] standard in Capillary blood
0
11
0.00
0.22
0.0
1.4
—
24.7
—
0
11
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
(3036086) Jo-1 extractable nuclear Ab [Units/volume] in Serum by Immunoassay
0
11
0.00
0.22
0.0
1.0
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
0
11
0.00
0.22
0.0
1.5
—
—
—
0
0
(3008037) Lactate [Moles/volume] in Venous blood
0
10
0.00
0.22
0.0
2.2
—
1.5
—
0
10
(3038515) Glucose [Moles/volume] in Venous blood
0
10
0.00
0.22
0.0
2.2
—
7.5
—
0
10
(1002224) Polysomnography panel
0
12
0.00
0.21
0.0
1.0
—
—
—
0
0
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
0
12
0.00
0.21
0.0
8.4
—
25.7
—
0
12
(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
14
0.00
0.20
0.0
2.4
—
—
—
0
0
(3022313) Gas panel - Capillary blood
0
14
0.00
0.20
0.0
1.8
—
—
—
0
0
(3017446) Testosterone [Moles/volume] in Serum or Plasma
0
14
0.00
0.20
0.0
1.7
—
15.7
—
0
14
(36304419) Bacteria [Presence] in Urine
8
66
1.27
0.19
1.5
2.5
—
—
—
0
0
(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma
8
69
1.21
0.18
2.0
2.2
u/l
44.9
54.3
—
8
63
(3018010) Neutrophils/100 leukocytes in Blood
9
104
0.82
0.15
6.7
4.8
%
66.5
59.3
—
9
92
(3002030) Lymphocytes/100 leukocytes in Blood
9
104
0.82
0.15
7.3
5.3
%
19.8
25.3
—
9
93
(3019069) Monocytes/100 leukocytes in Blood
9
103
0.83
0.15
7.3
5.2
%
8.7
8.6
—
9
90
(3003694) ABO and Rh group [Type] in Blood
5
43
1.19
0.10
1.8
1.3
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
10
113
0.84
0.10
3.0
2.7
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
6
57
1.06
0.09
2.8
3.3
—
—
—
0
0
(3013115) Eosinophils [#/volume] in Blood
10
112
0.85
0.09
6.8
4.6
e9/l
0.2
0.2
—
10
95
(3013826) Glucose [Moles/volume] in Serum or Plasma
13
142
0.87
0.08
4.5
4.2
mmol/l
7.0
6.8
0.04
13
125
(3044889) 12 lead EKG panel
15
159
0.90
0.04
4.8
4.2
—
—
—
0
0
(3006315) Basophils [#/volume] in Blood
10
107
0.91
0.02
6.7
4.7
e9/l
0.0
0.0
—
10
92
(3019198) Lymphocytes [#/volume] in Blood
10
107
0.91
0.02
6.7
5.0
e9/l
1.5
1.8
—
10
96
(3024561) Albumin [Mass/volume] in Serum or Plasma
10
97
1.04
0.00
7.3
3.8
g/l
33.6
34.7
—
10
92
(3001604) Monocytes [#/volume] in Blood
10
105
0.93
0.00
6.7
4.7
e9/l
0.6
0.6
—
10
91
(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3035320) C reactive protein [Mass/volume] in Body fluid
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3010566) Parathyrin.intact [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
5.4
—
—
—
0
0
(3050238) Crystals [Presence] in Synovial fluid by Light microscopy
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3010421) pH of Blood
0
5
0.00
0.00
0.0
5.4
—
7.4
—
0
5
(3013290) Carbon dioxide [Partial pressure] in Blood
0
5
0.00
0.00
0.0
5.2
—
4.8
—
0
5
(3001019) Free T4 and TSH panel - Serum or Plasma
0
5
0.00
0.00
0.0
2.2
—
—
—
0
0
(3024403) Complement+Immunoglobulin [Units/volume] in Red Blood Cells
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3044290) Cell count panel - Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3023351) European house dust mite IgE Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
0.7
—
0
5
(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3023323) Follitropin [Units/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.4
—
11.4
—
0
5
(3027315) Oxygen [Partial pressure] in Blood
0
5
0.00
0.00
0.0
5.2
—
8.8
—
0
5
(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
34.6
—
0
5
(3041423) Sjogrens syndrome-A extractable nuclear 60kD Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3026389) Candida sp identified in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3024928) Oxygen saturation in Venous blood
0
5
0.00
0.00
0.0
2.4
—
—
—
0
0
(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(40758558) Short blood count panel - Blood
5
54
0.91
0.00
15.4
3.3
—
—
—
0
0
(3004616) Nuclear Ab [Presence] in Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3020961) Endomysium IgA Ab [Titer] in Serum
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3005895) Myoglobin [Mass/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
3.4
—
692.1
—
0
8
(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis
0
7
0.00
0.00
0.0
1.0
—
0.0
—
0
7
(3033705) Calcium.ionized [Moles/volume] in Venous blood
0
8
0.00
0.00
0.0
1.9
—
—
—
0
0
(3008898) HLA-B27 [Presence]
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3050380) Cytology report of Cervical or vaginal smear or scraping Cyto stain
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3019230) Fractional oxyhemoglobin in Venous blood
0
6
0.00
0.00
0.0
1.8
—
65.5
—
0
6
(3023939) Sjogrens syndrome-A extractable nuclear Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(1761482) Bacteria [#/volume] in Urine by Culture
0
7
0.00
0.00
0.0
6.3
—
—
—
0
0
(3037756) Immunofixation for Serum or Plasma
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(3041354) Potassium [Moles/volume] in Venous blood
0
8
0.00
0.00
0.0
1.9
—
4.2
—
0
8
(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay
0
7
0.00
0.00
0.0
2.0
—
—
—
0
0
(40768443) Skin Pathology biopsy report
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(44816559) Phosphatidylethanol [Mass/volume] in Blood
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(1616796) Gas panel - Central venous blood
0
6
0.00
0.00
0.0
3.0
—
—
—
0
0
(3039162) Centromere protein B Ab [Units/volume] in Serum
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3027544) Mycobacterium sp identified in Sputum by Organism specific culture
0
6
0.00
0.00
0.0
2.5
—
—
—
0
0
(3024891) Influenza virus A+B Ag [Presence] in Specimen
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3021589) Normoblasts [#/volume] in Blood
8
86
0.91
0.00
15.6
8.4
e9/l
0.0
0.0
—
8
67
(3035285) Chloride [Moles/volume] in Venous blood
0
8
0.00
0.00
0.0
1.9
—
105.9
—
0
8
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
8
81
0.98
0.00
2.9
4.1
—
—
—
0
0
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: C3_TRACHEA_EXALLC – Malignant neoplasm of trachea, excluding all cancers (controls excluding all cancers)
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).