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Other congenital infectious and parasitic diseases

Endpoint Browser

P16_OTH_CONGN_INFECTIOUS_PARASITIC_DISEA

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519870

1. Apply sex-specific rule

None

519870

2. Check conditions

None

519870

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — P37
  • Cause of death: ICD-10 — P37

2 out of 7 registries used, show all original rules.

6

4. Check minimum number of events

None

6

5. Include endpoints

None

6

6. Filter based on genotype QC (FinnGen only)

6

Control definitions (FinnGen only)

Control exclude
P16_INFECTIONS_SPECIFIC_PERINA_PERIOD

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
P3
Name in latin
Alii morbi bacteriales et parasitarii congeniti

Case counts by codes

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FinnGen case counts by registry codes:

Not enough data for upset plot.

Not enough data for upset table.

Summary Statistics

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-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 156 73 83
Only index persons 104 51 53
Unadjusted period prevalence (%)
Whole population 0.00 0.00 0.00
Only index persons 0.00 0.00 0.00
Median age at first event (years)
Whole population - 0.09 0.00
Only index persons 0.12 0.23 0.01

-FinnGen-

Key figures

All Female Male
Number of individuals 6 6 -
Unadjusted period prevalence (%) 0.00 0.00 -
Median age at first event (years) 40.33 40.33 -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
0
18
0.00
0.75
0.0
5.9
—
1.01
—
0
11
0
15
0.00
0.49
0.0
5.7
—
311.93
—
0
15
0
17
0.00
0.49
0.0
2.4
—
—
—
0
0
0
11
0.00
0.24
0.0
11.5
—
5.95
—
0
11
0
11
0.00
0.24
0.0
11.5
—
4.86
—
0
11
0
10
0.00
0.24
0.0
9.1
—
101.20
—
0
10
0
10
0.00
0.24
0.0
12.4
—
—
—
0
0
0
10
0.00
0.24
0.0
6.3
—
0.23
—
0
10
0
9
0.00
0.23
0.0
1.6
—
—
—
0
0
0
9
0.00
0.23
0.0
6.2
—
10.12
—
0
9
0
9
0.00
0.23
0.0
1.4
—
—
—
0
0
0
13
0.00
0.23
0.0
1.7
—
—
—
0
0
0
5
0.00
-0.00
0.0
11.6
—
36.88
—
0
5
6
60
0.00
-0.00
17.0
29.9
37.70
39.18
%
—
6
60
0
5
0.00
-0.00
0.0
1.8
—
81.12
—
0
5
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
10.7
—
—
—
0
0
0
7
0.00
-0.00
0.0
10.9
—
0.99
—
0
7
0
7
0.00
-0.00
0.0
4.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
12.2
—
2.90
—
0
5
0
6
0.00
-0.00
0.0
2.7
—
—
—
0
0
6
60
0.00
-0.00
17.0
29.5
30.67
29.80
pg
—
6
60
0
6
0.00
-0.00
0.0
10.2
—
0.78
—
0
6
0
7
0.00
-0.00
0.0
16.4
—
25.63
—
0
7
0
8
0.00
-0.00
0.0
5.3
—
427.75
—
0
8
0
5
0.00
-0.00
0.0
10.4
—
124.80
—
0
5
0
5
0.00
-0.00
0.0
2.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.8
—
35.60
—
0
5
0
8
0.00
-0.00
0.0
3.0
—
1.01
—
0
8
0
6
0.00
-0.00
0.0
4.0
—
1.15
—
0
6
6
53
+∞
-0.00
15.5
25.9
14.27
13.59
%
—
6
53
6
60
0.00
-0.00
17.0
29.9
125.67
129.93
g/l
—
6
60
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
3.9
—
—
—
0
0
0
5
0.00
-0.00
0.0
12.4
—
17.44
—
0
5
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
6
60
0.00
-0.00
17.0
29.5
91.28
89.70
fl
—
6
60
0
8
0.00
-0.00
0.0
2.8
—
4.02
—
0
8
0
5
0.00
-0.00
0.0
10.0
—
107.20
—
0
5
0
6
0.00
-0.00
0.0
2.2
—
—
—
0
0

Mortality – FinRegistry

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Association

Association between endpoint P16_OTH_CONGN_INFECTIOUS_PARASITIC_DISEA and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have P16_OTH_CONGN_INFECTIOUS_PARASITIC_DISEA.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

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Index endpoint: P16_OTH_CONGN_INFECTIOUS_PARASITIC_DISEA – Other congenital infectious and parasitic diseases

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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