Traumatic amputation of forearm

ST19_TRAUMAT_AMPUT_FOREA

No definition available.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — S58 Cause of death: ICD-10 — S58 2 out of 7 registries used, show all original rules.	25
4. Check minimum number of events None	25
5. Include endpoints None	25
6. Filter based on genotype QC (FinnGen only)	25

Control definitions (FinnGen only)

Control exclude: ST19_INJURI_ELBOW_FOREA

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: S5
Name in latin: Amputatio traumatica antebrachii

NAME	ST19_TRAUMAT_AMPUT_FOREA
CONTROL_EXCLUDE	ST19_INJURI_ELBOW_FOREA
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	S58
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	S58
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Traumatic amputation of forearm based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	25	13	12
Unadjusted period prevalence (%)	0.00	0.00	0.01
Median age at first event (years)	53.44	44.91	62.68

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

No data available

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3005895) Myoglobin [Mass/volume] in Serum or Plasma

9.99

2.88

5.2

3.3

856.2

474.3

ug/l

—

(3007853) Bacteria identified in Skin by Aerobe culture

4.96

2.46

8.1

1.3

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

3.39

2.28

7.6

3.3

—

(3012095) Magnesium [Moles/volume] in Serum or Plasma

3.86

2.17

7.4

4.1

0.8

mmol/l

—

(3044640) Blood type and Crossmatch panel - Blood

3.21

2.06

4.5

1.8

—

(3023368) Bacteria identified in Blood by Culture

3.22

1.98

4.9

5.1

—

(3014007) Fractional oxyhemoglobin in Arterial blood

4.91

1.92

44.2

13.0

94.1

92.7

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

3.07

1.83

5.0

1.8

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

4.52

1.81

2.6

2.7

0.6

0.7

—

(3004119) Hemoglobin [Mass/volume] in Venous blood

4.52

1.81

2.6

3.1

116.0

125.2

g/l

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

4.18

1.70

2.6

2.7

1.0

1.3

—

(3012544) pH of Venous blood

3.25

1.54

3.7

3.9

—

(3002173) Hemoglobin [Mass/volume] in Arterial blood

3.63

1.51

44.2

10.8

98.8

119.9

g/l

—

(3027945) Reticulocytes/100 erythrocytes in Blood

3.02

1.28

1.4

1.6

1.1

1.5

—

(3000991) Gas panel - Venous blood

3.02

1.28

7.0

8.8

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

2.42

1.19

3.8

3.3

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

2.49

0.99

38.5

8.1

107.0

103.8

mmol/l

—

(3042936) Bacteria identified in Isolate by Culture

2.49

0.99

8.5

1.6

—

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

0.00

0.84

0.0

4.4

—

14.6

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

2.46

0.81

1.6

1.4

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

2.34

0.80

1.8

1.5

—

(3004789) Transferrin [Mass/volume] in Serum or Plasma

1.98

0.70

1.6

1.4

2.5

2.3

g/l

—

(3037467) Urinalysis macro (dipstick) panel - Urine

142

1.95

0.70

4.4

3.6

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

2.00

0.64

1.5

1.6

—

(3027238) Thyroperoxidase Ab [Units/volume] in Serum or Plasma

0.00

0.63

0.0

1.1

—

103.9

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

0.00

0.63

0.0

2.0

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

1.76

0.59

2.7

1.6

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

1.82

0.56

1.4

1.7

—

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

151

1.68

0.54

3.7

4.0

14.2

14.8

pmol/l

0.38

134

(40760892) CBC W Ordered Manual Differential panel - Blood

1.63

0.52

2.6

4.2

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

1.70

0.50

1.8

1.9

—

(3013512) EKG study

1.70

0.50

4.0

3.7

—

(3009261) Glucose [Presence] in Urine by Test strip

1.65

0.49

4.1

3.7

—

0.0

estimate

—

(40758558) Short blood count panel - Blood

1.59

0.49

4.0

5.6

—

(3015736) pH of Urine

1.64

0.48

4.7

3.5

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

1.59

0.43

1.8

1.6

—

(3017446) Testosterone [Moles/volume] in Serum or Plasma

0.00

0.41

0.0

1.9

—

8.7

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

1.59

0.40

5.3

3.9

55.1

28.3

ng/l

—

(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma

1.51

0.36

2.9

1429.1

1513.5

ng/l

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

135

0.67

0.34

3.9

3.5

—

(3026008) Bacteria identified in Urine by Culture

1.40

0.32

2.4

2.8

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

1.39

0.23

5.0

4.0

—

(4010399)

0.00

0.22

0.0

1.2

—

(3023421) Hepatitis B virus surface Ab [Units/volume] in Serum

0.00

0.22

0.0

2.3

—

462.8

—

(3050380) Cytology report of Cervical or vaginal smear or scraping Cyto stain

0.00

0.22

0.0

1.3

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

0.00

0.21

0.0

1.7

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

1.23

0.21

2.3

1.6

3.4

2.3

mg/l

—

(42870588) Differential panel, method unspecified - Blood

0.67

0.20

6.4

4.3

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

1.20

0.11

4.4

3.3

2.6

2.5

mmol/l

—

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

188

1.32

0.09

5.3

4.5

1.2

1.8

mu/l

4.84

165

(3041096) Erythrocytes [Presence] in Urine by Automated

0.81

0.09

3.8

3.6

—

(36304419) Bacteria [Presence] in Urine

0.83

0.09

2.2

2.6

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

1.14

0.09

5.5

2.7

—

(3044889) 12 lead EKG panel

138

1.03

0.00

5.0

3.4

—

(1002224) Polysomnography panel

0.00

0.0

1.3

—

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.1

—

(3036086) Jo-1 extractable nuclear Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.4

—

(3019473) Protein [Mass/volume] in Cerebral spinal fluid

0.00

0.0

1.2

—

349.2

—

(3006999) Ribonucleoprotein extractable nuclear Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

0.00

0.0

1.4

—

1.4

—

(3027450) Sjogrens syndrome-B extractable nuclear Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(3035637) Corticotropin [Mass/volume] in Plasma

0.00

0.0

1.6

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.0

1.1

—

(3023939) Sjogrens syndrome-A extractable nuclear Ab [Units/volume] in Serum

0.00

0.0

1.3

—

(3017895) Helicobacter pylori Ab [Units/volume] in Serum

0.00

0.0

1.7

—

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.0

6.6

—

0.0

—

(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

29.2

—

(3025245) SCL-70 extractable nuclear Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.4

—

(3003694) ABO and Rh group [Type] in Blood

0.96

0.00

1.5

—

(3007930) Methemoglobin/Hemoglobin.total in Blood

0.00

0.0

2.6

—

0.9

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.5

—

(3034780) Angiotensin converting enzyme [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

2.6

—

45.1

—

(40768443) Skin Pathology biopsy report

0.00

0.0

1.0

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.0

1.1

—

(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.4

—

(3034770) Mitochondria Ab [Titer] in Serum

0.00

0.0

2.0

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

0.0

1.5

—

0.2

—

(3020044) Glucose [Moles/volume] in Cerebral spinal fluid

0.00

0.0

1.0

—

3.8

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

0.00

0.0

2.3

—

(3015171) Extractable nuclear Ab [Units/volume] in Serum

0.00

0.0

1.3

—

(3007566) Smooth muscle Ab [Titer] in Serum

0.00

0.0

1.8

—

(3023024) Carbon dioxide [Partial pressure] in Capillary blood

0.00

0.0

1.4

—

4.5

—

(3016543) Leukocytes [#/volume] in Cerebral spinal fluid

0.00

0.0

1.2

—

1.5

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

0.00

0.0

1.0

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

0.00

0.0

1.1

—

(3027475) Erythrocytes [#/volume] in Cerebral spinal fluid

0.00

0.0

1.3

—

15.3

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.1

—

(3008898) HLA-B27 [Presence]

0.00

0.0

1.1

—

(40768804) Tissue Pathology biopsy report

1.02

0.00

2.0

2.4

—

(3003284) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum by Immunofluorescence

0.00

0.0

2.4

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.3

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

0.00

0.0

1.5

—

(3039162) Centromere protein B Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

0.0

2.4

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.0

1.1

—

(3037551) Cancer Ag 125 [Units/volume] in Serum or Plasma

0.00

0.0

1.6

—

14.0

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

0.00

0.0

1.5

—

(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum

0.00

0.0

1.2

—

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

0.00

0.0

1.1

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: ST19_TRAUMAT_AMPUT_FOREA – Traumatic amputation of forearm

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Traumatic amputation of forearm

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Traumatic amputation of forearm (ST19_TRAUMAT_AMPUT_FOREA)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

LabWAS

Mortality – FinRegistry

Relationships between endpoints