This is a non-core endpoint: only basic statistics are computed.
See these related core endpoints for full statistics:
Squamous cell neoplasms and carcinoma of rectum, excluding all cancers (controls excluding all cancers)
C3_RECTUM_SQUAM_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
1 out of 7 registries used, show all original rules. |
37 |
4. Check minimum number of eventsNone |
37 |
5. Include endpointsNone |
37 |
6. Filter based on genotype QC (FinnGen only) |
37 |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE_EXALLC
Extra metadata
- First used in FinnGen datafreeze
- DF12
Similar endpoints
↥List of similar endpoints to
Squamous cell neoplasms and carcinoma of rectum, excluding all cancers (controls excluding all cancers)
based on the number of shared cases.
Similar with more cases:
- Squamous cell neoplasms and carcinoma of rectum
- Malignant neoplasm of rectum
- Malignant neoplasm of rectum, excluding all cancers (controls excluding all cancers)
- Colorectal cancer
- Colorectal cancer, excluding all cancers (controls excluding all cancers)
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 37 | 30 | 7 |
| Unadjusted period prevalence (%) | 0.01 | 0.01 | 0.00 |
| Median age at first event (years) | 62.27 | 60.13 | 71.42 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3022145) Colonoscopy Study observation
24
29
21.71
20.98
2.8
1.2
—
—
—
0
0
(4035726)
17
8
37.48
13.60
1.4
1.0
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
19
57
5.80
6.53
6.0
3.8
—
—
—
0
0
(3012095) Magnesium [Moles/volume] in Serum or Plasma
16
41
6.11
6.53
2.0
1.8
mmol/l
0.8
0.8
0.94
16
36
(40768804) Tissue Pathology biopsy report
27
110
6.38
6.53
3.6
1.5
—
—
—
0
0
(3024561) Albumin [Mass/volume] in Serum or Plasma
28
127
5.93
5.84
9.1
3.9
g/l
35.7
36.1
0.15
28
120
(3015377) Calcium [Moles/volume] in Serum or Plasma
22
91
4.50
4.81
8.4
2.0
mmol/l
2.3
2.4
0.55
22
76
(40758558) Short blood count panel - Blood
18
64
4.53
4.80
10.1
4.4
—
—
—
0
0
(3002256) Pathology report gross observation
11
32
4.47
3.66
2.0
1.1
—
—
—
0
0
(3033658) Prothrombin time (PT) actual/Normal
16
62
3.78
3.64
3.4
3.4
%
101.1
93.6
0.48
16
62
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
13
45
3.91
3.44
2.5
2.8
e6/l
2.7
5.3
—
7
24
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
20
93
3.50
3.42
3.7
3.0
—
—
—
0
0
(3006140) Bilirubin.total [Moles/volume] in Serum or Plasma
28
164
3.90
3.39
10.2
3.3
umol/l
7.9
10.0
2.55
28
150
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
7
11
7.54
3.35
6.1
6.9
mmol/l
24.7
26.0
—
7
11
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
8
16
6.05
3.26
1.0
1.4
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
15
62
3.39
3.02
2.4
1.9
—
—
—
0
0
(36304419) Bacteria [Presence] in Urine
17
78
3.18
2.87
3.7
2.8
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
22
123
2.95
2.56
5.8
3.7
—
—
—
0
0
(3032080) INR in Blood by Coagulation assay
19
100
2.85
2.44
5.3
6.7
inr
1.0
1.2
—
5
29
(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma
12
51
3.00
2.23
5.0
2.0
mmol/l
2.5
2.4
0.32
12
39
(3044640) Blood type and Crossmatch panel - Blood
16
81
2.72
2.16
2.9
1.9
—
—
—
0
0
(3025941) Bacteria identified in Stool by Culture
6
16
4.26
2.02
1.0
1.3
—
—
—
0
0
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
12
55
2.75
1.92
2.1
2.5
e6/l
0.2
1.2
—
6
33
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
7
23
3.50
1.91
1.7
1.9
—
—
—
0
0
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
7
23
3.50
1.91
1.7
1.9
—
—
—
0
0
(3037467) Urinalysis macro (dipstick) panel - Urine
29
210
2.76
1.87
5.4
4.0
—
—
—
0
0
(3014007) Fractional oxyhemoglobin in Arterial blood
5
13
4.27
1.77
6.0
8.7
%
97.4
93.4
—
5
13
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
5
13
4.27
1.77
9.4
7.8
—
—
—
0
0
(3021589) Normoblasts [#/volume] in Blood
19
115
2.34
1.69
17.2
8.2
e9/l
0.0
0.0
0.00
13
92
(3019198) Lymphocytes [#/volume] in Blood
22
142
2.35
1.69
3.7
5.3
e9/l
1.3
1.8
2.59
17
129
(3006315) Basophils [#/volume] in Blood
22
142
2.35
1.69
3.4
5.3
e9/l
0.0
0.0
2.90
16
126
(3001604) Monocytes [#/volume] in Blood
22
142
2.35
1.69
3.4
5.2
e9/l
0.5
0.5
0.16
16
126
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
5
14
3.95
1.67
6.0
7.9
%
0.9
1.7
—
5
14
(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection
5
14
3.95
1.67
1.0
1.1
—
—
—
0
0
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
5
14
3.95
1.67
6.0
7.9
%
0.4
0.8
—
5
14
(42870588) Differential panel, method unspecified - Blood
17
99
2.33
1.64
5.0
5.2
—
—
—
0
0
(3007853) Bacteria identified in Skin by Aerobe culture
7
27
2.95
1.60
1.3
1.5
—
—
—
0
0
(3013115) Eosinophils [#/volume] in Blood
22
147
2.22
1.50
4.2
5.3
e9/l
0.1
0.2
1.76
17
131
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
19
121
2.17
1.44
2.2
1.9
pmol/l
87.1
97.1
—
10
45
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
13
71
2.28
1.42
1.9
1.3
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
8
34
2.72
1.39
2.4
1.8
—
—
—
0
0
(3002173) Hemoglobin [Mass/volume] in Arterial blood
6
24
2.78
1.36
8.3
6.8
g/l
112.7
123.8
—
6
24
(3000492) Spirometry study
5
19
2.88
1.26
1.0
1.2
—
—
—
0
0
(3000991) Gas panel - Venous blood
5
19
2.88
1.26
6.4
7.8
—
—
—
0
0
(46235355) HIV 1 and 2 tests - Meaningful Use set
7
33
2.38
1.13
1.1
1.5
—
—
—
0
0
(3016251) Hemoglobin.gastrointestinal [Presence] in Stool
5
21
2.59
1.13
1.6
2.3
—
—
—
0
0
(3003694) ABO and Rh group [Type] in Blood
11
64
2.02
0.99
1.3
1.3
—
—
—
0
0
(3003396) Base excess in Arterial blood by calculation
6
31
2.11
0.89
8.3
6.2
mmol/l
-0.0
2.2
—
6
25
(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma
15
102
1.79
0.85
4.9
2.1
u/l
59.5
56.8
0.13
15
93
(40760892) CBC W Ordered Manual Differential panel - Blood
9
54
1.88
0.83
5.0
4.4
—
—
—
0
0
(36660697) Celiac disease serology panel - Serum
0
27
0.00
0.81
0.0
1.1
—
—
—
0
0
(3004410) Hemoglobin A1c/Hemoglobin.total in Blood
26
301
0.54
0.79
3.7
6.2
mmol/mol
36.7
40.4
2.56
21
282
(3048689) Calprotectin [Mass/mass] in Stool
7
41
1.87
0.75
1.3
1.6
ug/g
92.9
109.0
—
7
33
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
5
26
2.06
0.73
1.4
2.2
—
—
—
0
0
(21494755) Public health laboratory ask at order entry panel
5
30
1.77
0.64
1.0
1.4
—
—
—
0
0
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
0
19
0.00
0.62
0.0
1.2
—
—
—
0
0
(3002385) Erythrocyte distribution width [Ratio]
29
254
1.65
0.58
33.6
14.1
%
13.8
13.6
0.48
29
248
(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma
14
104
1.56
0.53
2.6
2.8
u/l
24.1
29.4
0.76
14
97
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
0
16
0.00
0.42
0.0
1.2
—
—
—
0
0
(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal
0
18
0.00
0.41
0.0
1.1
—
—
—
0
0
(3009542) Hematocrit [Volume Fraction] of Blood
32
292
1.71
0.41
23.0
12.6
%
37.7
39.6
1.35
25
211
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
20
171
1.37
0.34
2.8
2.7
—
—
—
0
0
(3018251) Fasting glucose [Moles/volume] in Serum or Plasma
30
316
0.73
0.33
3.7
4.9
mmol/l
5.7
5.9
0.99
25
291
(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma
9
74
1.28
0.28
1.4
1.8
mg/l
3.6
0.7
—
9
65
(3013826) Glucose [Moles/volume] in Serum or Plasma
19
167
1.28
0.24
6.6
4.0
mmol/l
6.3
6.7
0.72
19
152
(3020891) Body temperature
0
11
0.00
0.22
0.0
3.3
—
—
—
0
0
(1002224) Polysomnography panel
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
(3018405) Lactate [Moles/volume] in Arterial blood
0
11
0.00
0.22
0.0
3.6
—
1.2
—
0
11
(3004616) Nuclear Ab [Presence] in Serum
0
11
0.00
0.22
0.0
1.1
—
—
—
0
0
(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum
0
10
0.00
0.22
0.0
1.1
—
—
—
0
0
(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay
0
10
0.00
0.22
0.0
1.0
—
—
—
0
0
(40768443) Skin Pathology biopsy report
0
10
0.00
0.22
0.0
1.3
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
(3020961) Endomysium IgA Ab [Titer] in Serum
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
(3046870) Tissue transglutaminase IgG Ab [Units/volume] in Serum
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
6
52
1.18
0.20
1.7
1.3
—
—
—
0
0
(3013512) EKG study
10
83
1.28
0.18
3.4
3.6
—
—
—
0
0
(3009201) Thyrotropin [Units/volume] in Serum or Plasma
28
293
0.82
0.17
4.7
5.0
mu/l
2.0
1.9
0.07
23
268
(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma
12
103
1.24
0.16
1.2
2.0
u/l
96.0
115.9
0.24
12
97
(3041096) Erythrocytes [Presence] in Urine by Automated
10
84
1.26
0.16
4.2
3.7
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
9
104
0.82
0.15
2.0
3.0
—
—
—
0
0
(3007164) IgA [Mass/volume] in Serum or Plasma
6
72
0.80
0.08
1.3
1.2
g/l
2.0
2.4
—
6
38
(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma
12
129
0.90
0.04
2.6
2.3
nmol/l
74.7
79.1
0.21
12
115
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
12
113
1.09
0.02
3.7
4.0
—
—
—
0
0
(3015736) pH of Urine
10
106
0.92
0.01
2.6
3.6
—
—
—
0
0
(3044889) 12 lead EKG panel
23
225
1.06
0.00
4.1
3.6
—
—
—
0
0
(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3009340) Metanephrine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3010130) Cytomegalovirus IgG Ab [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3005702) Mycobacterium sp identified in Specimen by Organism specific culture
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
(3038515) Glucose [Moles/volume] in Venous blood
0
6
0.00
0.00
0.0
2.7
—
8.8
—
0
6
(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(1001926) Buprenorphine [Presence] in Urine by Screen method
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
6
64
0.93
0.00
2.7
3.4
—
—
—
0
0
(40760888) Immunoglobulin light chains.free panel - Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3050238) Crystals [Presence] in Synovial fluid by Light microscopy
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3011288) Drugs identified in Urine by Screen method
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(3044927) Protein electrophoresis panel - Urine
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3030408) 3-Methoxytyramine [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(1761482) Bacteria [#/volume] in Urine by Culture
0
6
0.00
0.00
0.0
3.5
—
—
—
0
0
(3046294) Neutrophil cytoplasmic Ab.classic [Titer] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3026493) Urate [Moles/volume] in Serum or Plasma
8
80
1.00
0.00
1.4
2.4
umol/l
30991.3
11558.1
—
8
67
(3035285) Chloride [Moles/volume] in Venous blood
0
6
0.00
0.00
0.0
2.3
—
106.2
—
0
6
(3022313) Gas panel - Capillary blood
0
6
0.00
0.00
0.0
6.7
—
—
—
0
0
(3013327) Hepatitis A virus IgM Ab [Presence] in Serum
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
9
94
0.94
0.00
4.7
2.9
—
—
—
0
0
(42870308) Desmosome IgG Ab [Titer] in Serum by Immunofluorescence
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3033705) Calcium.ionized [Moles/volume] in Venous blood
0
6
0.00
0.00
0.0
2.3
—
—
—
0
0
(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(3015916) Alpha-1-Fetoprotein [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.5
—
2.8
—
0
6
(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(3041354) Potassium [Moles/volume] in Venous blood
0
6
0.00
0.00
0.0
2.3
—
4.0
—
0
6
(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3008037) Lactate [Moles/volume] in Venous blood
0
6
0.00
0.00
0.0
2.7
—
1.5
—
0
6
(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection
0
9
0.00
-0.00
0.0
1.3
—
—
—
0
0
(3004490) Bicarbonate [Moles/volume] standard in Capillary blood
0
7
0.00
-0.00
0.0
5.0
—
25.1
—
0
7
(3044290) Cell count panel - Cerebral spinal fluid
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
(40759883) Oligoclonal Bands IgG [Presence] in Cerebral spinal fluid by Isoelectric focusing
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
(3048929) Epstein Barr virus Ab [Presence] in Serum
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
(40758310) Human epididymis protein 4 [Moles/volume] in Serum or Plasma
0
9
0.00
-0.00
0.0
1.1
—
66.8
—
0
9
(4027681)
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
(3003327) Ova and parasites identified in Stool by Light microscopy
0
9
0.00
-0.00
0.0
1.9
—
—
—
0
0
(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
(3007778) Kappa light chains/Lambda light chains [Mass Ratio] in Serum
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
(3026389) Candida sp identified in Specimen by Organism specific culture
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection
0
9
0.00
-0.00
0.0
1.3
—
—
—
0
0
(40766048) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum by Immunoassay
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: C3_RECTUM_SQUAM_EXALLC – Squamous cell neoplasms and carcinoma of rectum, excluding all cancers (controls excluding all cancers)
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).