This is a non-core endpoint: only basic statistics are computed.
See its core counterpart C3_RECTUM_SQUAM_EXALLC for full statistics.
Squamous cell neoplasms and carcinoma of rectum
C3_RECTUM_SQUAM
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
1 out of 7 registries used, show all original rules. |
37 |
4. Check minimum number of eventsNone |
37 |
5. Include endpointsNone |
37 |
6. Filter based on genotype QC (FinnGen only) |
37 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- First used in FinnGen datafreeze
- DF8
Similar endpoints
↥List of similar endpoints to
Squamous cell neoplasms and carcinoma of rectum
based on the number of shared cases.
Similar with more cases:
- Squamous cell neoplasms and carcinoma of rectum, excluding all cancers (controls excluding all cancers)
- Malignant neoplasm of rectum
- Malignant neoplasm of rectum, excluding all cancers (controls excluding all cancers)
- Colorectal cancer
- Colorectal cancer, excluding all cancers (controls excluding all cancers)
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 37 | 30 | 7 |
| Unadjusted period prevalence (%) | 0.01 | 0.01 | 0.00 |
| Median age at first event (years) | 62.27 | 60.13 | 71.42 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
No data available
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
28
138
5.21
4.92
9.1
5.5
35.7
35.1
g/l
0.34
28
130
16
53
4.56
4.65
2.0
2.8
0.8
0.8
mmol/l
0.67
16
48
22
112
3.38
3.20
8.4
4.6
2.3
2.3
mmol/l
0.30
22
96
7
14
5.89
2.88
6.1
5.5
24.7
25.8
mmol/l
—
7
14
13
54
3.17
2.54
2.5
2.8
2.7
4.2
e6/l
—
7
29
8
23
4.14
2.43
1.0
1.4
—
—
—
0
0
15
70
2.92
2.39
2.4
2.1
—
—
—
0
0
20
110
2.78
2.35
3.7
3.0
—
—
—
0
0
28
197
2.73
2.04
10.2
7.6
7.9
9.9
umol/l
2.39
28
184
5
11
5.06
2.01
6.0
9.9
0.9
1.4
%
—
5
11
22
139
2.44
1.81
5.8
4.2
—
—
—
0
0
5
14
3.95
1.67
1.0
1.0
—
—
—
0
0
12
59
2.53
1.66
5.0
4.0
2.5
2.5
mmol/l
0.19
12
48
13
68
2.41
1.58
1.9
1.3
—
—
—
0
0
19
120
2.20
1.48
2.2
1.9
87.1
98.3
pmol/l
—
10
50
12
63
2.34
1.43
2.1
2.6
0.2
1.0
e6/l
—
6
38
15
104
1.74
0.79
4.9
2.6
59.5
55.3
u/l
0.21
15
95
26
299
0.56
0.72
3.7
5.8
36.7
39.9
mmol/mol
2.05
21
277
5
27
1.98
0.71
1.4
2.1
—
—
—
0
0
7
44
1.73
0.69
1.7
1.5
—
—
—
0
0
7
44
1.73
0.69
1.7
1.5
—
—
—
0
0
8
57
1.51
0.46
2.4
1.6
—
—
—
0
0
9
65
1.51
0.43
1.4
1.7
3.6
0.8
mg/l
—
9
56
0
16
0.00
0.42
0.0
1.2
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
0
18
0.00
0.41
0.0
1.2
—
—
—
0
0
20
172
1.35
0.32
2.8
2.7
—
—
—
0
0
30
314
0.76
0.32
3.7
4.7
5.7
5.8
mmol/l
0.46
25
289
28
296
0.78
0.28
4.7
4.8
2.0
1.9
mu/l
0.24
23
267
12
98
1.33
0.25
1.3
2.1
96.0
113.9
u/l
0.21
12
93
14
118
1.30
0.24
2.6
3.5
24.1
30.0
u/l
0.87
14
110
0
11
0.00
0.22
0.0
1.7
—
—
—
0
0
0
10
0.00
0.22
0.0
4.4
—
24.6
—
0
10
0
10
0.00
0.22
0.0
1.8
—
93.3
—
0
10
0
10
0.00
0.22
0.0
2.6
—
—
—
0
0
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
19
177
1.15
0.09
6.6
4.5
6.3
6.5
mmol/l
0.38
19
167
12
129
0.90
0.04
2.6
2.3
74.7
75.8
nmol/l
0.05
12
115
12
114
1.08
0.01
3.7
3.9
—
—
—
0
0
8
79
1.02
0.00
1.4
2.4
30991.3
6724.3
umol/l
—
8
64
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
6
58
1.04
0.00
1.7
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.1
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: C3_RECTUM_SQUAM – Squamous cell neoplasms and carcinoma of rectum
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).