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Carcinoma in situ of other and unspecified parts of intestine

CD2_INSITU_INTESTINEOTH

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D01.4&
  • Hospital discharge: ICD-9 2307
  • Cause of death: ICD-10 D01.4&
  • Cause of death: ICD-9 2307

2 out of 7 registries used, show all original rules.

5

4. Check minimum number of events

None

5

5. Include endpoints

None

5

6. Filter based on genotype QC (FinnGen only)

5

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
D01
Name in latin
Carcinoma in situ partium aliarum sive non specificatarum intestini

Case counts by codes

FinnGen case counts by registry codes:

Not enough data for upset plot.

Not enough data for upset table.

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 5 - -
Unadjusted period prevalence (%) 0.00 - -
Median age at first event (years) 57.54 - -

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
0
11
0.00
0.24
0.0
3.6
—
32.5
—
0
6
5
40
+∞
0.24
18.2
20.1
68.8
79.7
umol/l
—
5
40
0
10
0.00
0.24
0.0
2.3
—
—
—
0
0
5
38
+∞
0.24
19.4
14.4
32.6
15.9
mg/l
—
5
28
5
44
+∞
0.00
27.8
21.0
120.4
133.9
g/l
—
5
44
0
6
0.00
0.00
0.0
5.3
—
—
—
0
0
0
7
0.00
0.00
0.0
2.7
—
8.2
—
0
7
5
44
+∞
0.00
27.6
20.8
92.5
91.6
fl
—
5
44
0
6
0.00
0.00
0.0
2.3
—
6.0
—
0
6
0
6
0.00
0.00
0.0
2.5
—
—
—
0
0
5
44
+∞
0.00
27.6
20.8
30.7
30.5
pg
—
5
44
0
5
0.00
0.00
0.0
4.8
—
0.2
—
0
5
5
42
+∞
0.00
16.8
13.5
—
—
—
0
0
0
5
0.00
0.00
0.0
2.6
—
4.2
—
0
5

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: CD2_INSITU_INTESTINEOTH – Carcinoma in situ of other and unspecified parts of intestine

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).