Hypospadias with an incomplete glans penis

Q17_HYPOSPADIAS_WITH_AN_INCOMPLETE_GLANS_PENIS

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	519972
1. Apply sex-specific rule None	519972
2. Check conditions None	519972
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — Q54.0 Cause of death: ICD-10 — Q54.0 2 out of 7 registries used, show all original rules.	78
4. Check minimum number of events None	78
5. Include endpoints None	78
6. Filter based on genotype QC (FinnGen only)	71

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

NAME	Q17_HYPOSPADIAS_WITH_AN_INCOMPLETE_GLANS_PENIS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	Q540
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	Q540
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Hypospadias with an incomplete glans penis based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	71	-	70
Unadjusted period prevalence (%)	0.03	-	0.03
Median age at first event (years)	6.23	-	5.62

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
78: Matched controls
780

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

Q54.0

ICD-10 Finland

Hypospadias, balanic

+∞

112.2

KGH61

NOMESCO Finland

Correction of distal hypospadia

477.5

32.4

XKD00

NOMESCO Finland

Uroflowmetry

13.8

29.6

KC1EE

NOMESCO Finland

Ultrasound measurement of residual urine

11.9

23.4

Q54.1

ICD-10 Finland

Hypospadias, penile

182.9

15.0

ZXE10

NOMESCO Finland

More than one and less than three hours

5.2

11.8

138

Q54.9

ICD-10 Finland

Hypospadias, unspecified

126.3

10.7

UKC02

NOMESCO Finland

Cystoscopy

8.0

8.8

7526B

ICD-9 Finland

Congenital anomalies of genital organs, Hypospadias and epispadias[HYPOSPADIA]

+∞

8.5

Q54.4

ICD-10 Finland

Congenital chordee

88.1

7.6

ZXD10

NOMESCO Finland

Scheduled procedure

3.3

6.4

180

Q54.2

ICD-10 Finland

Hypospadias, penoscrotal

+∞

6.3

TKD00

NOMESCO Finland

Dilatation of urethra

+∞

6.3

7421

FHL

Single-stage total correction, in distal hypospadia

+∞

6.3

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3035350) Ketones [Presence] in Urine by Test strip

193

2.01

2.21

4.2

3.2

0.00

estimate

—

(3026008) Bacteria identified in Urine by Culture

2.39

2.21

3.6

2.5

—

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

374

1.94

2.03

3.4

2.8

14.85

15.13

pmol/l

0.33

335

(3029937) Albumin [Presence] in Urine by Test strip

109

2.12

2.01

4.5

3.0

0.00

0.02

estimate

—

(3021601) Nitrite [Presence] in Urine by Test strip

194

1.89

1.87

5.0

4.5

0.00

estimate

—

(3009261) Glucose [Presence] in Urine by Test strip

195

1.88

1.84

4.3

3.2

0.00

estimate

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

146

1.93

1.78

4.2

2.9

—

(3002385) Erythrocyte distribution width [Ratio]

530

1.83

1.31

13.7

15.8

14.08

13.70

0.22

524

(3041096) Erythrocytes [Presence] in Urine by Automated

102

1.85

1.29

4.8

2.9

—

(3028707) Methadone [Presence] in Urine by Screen method

2.29

1.26

4.0

3.0

—

(3002256) Pathology report gross observation

2.23

1.22

1.3

1.2

—

(40768804) Tissue Pathology biopsy report

137

1.73

1.22

1.6

1.7

—

(40761511) CBC panel - Blood by Automated count

592

1.93

1.20

12.2

9.9

—

(3037467) Urinalysis macro (dipstick) panel - Urine

291

1.60

1.20

5.4

3.8

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

113

1.77

1.19

2.3

1.7

80.09

98.27

pmol/l

1.08

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

536

1.76

1.19

3.5

—

(3025941) Bacteria identified in Stool by Culture

2.46

1.15

1.0

1.1

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

361

1.58

1.15

5.7

12.1

3.89

3.88

e9/l

0.01

312

(3027944) Amphetamines [Presence] in Urine

1.83

1.14

2.7

2.0

—

(3000764) Benzodiazepines [Presence] in Urine

1.80

1.10

2.7

2.0

—

(3027008) Opiates [Presence] in Urine

1.80

1.10

2.7

2.0

—

(3011288) Drugs identified in Urine by Screen method

1.97

1.09

3.2

2.3

—

(1761868) Lipid panel - Serum or Plasma

159

1.63

1.08

2.3

2.1

—

(3028300) Cannabinoids [Presence] in Urine

1.78

1.06

2.7

2.0

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

1.90

1.01

1.7

2.0

—

(40761536) Microorganisms panel - Urine sediment

2.04

1.00

9.4

3.0

—

(3016879) Cocaine [Presence] in Urine

1.77

0.99

2.7

2.0

—

(3019225) pH of Specimen

2.32

0.96

3.2

8.1

—

(40761535) Cells panel - Urine sediment

2.32

0.96

2.3

3.5

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

1.82

0.95

2.9

2.2

—

(40768797) Stomach Pathology biopsy report

2.01

0.92

1.4

1.3

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

1.82

0.85

1.6

1.9

—

(3013115) Eosinophils [#/volume] in Blood

327

1.46

0.85

5.5

10.3

0.19

0.22

e9/l

0.48

285

(3044889) 12 lead EKG panel

279

1.46

0.85

3.7

2.9

—

(3000494) Fungus identified in Specimen by Culture

1.74

0.81

1.9

1.5

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

1.66

0.78

1.5

4.9

0.75

2.06

mg/l

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.92

0.76

12.9

7.6

—

(3022145) Colonoscopy Study observation

1.78

0.72

1.7

1.5

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

1.54

0.64

3.2

—

(3018677) aPTT in Platelet poor plasma by Coagulation assay

1.59

0.64

2.1

4.7

31.79

30.11

0.27

(40760892) CBC W Ordered Manual Differential panel - Blood

301

1.36

0.63

6.7

9.2

—

(36032269) Testosterone Free [Moles/volume] in Serum or Plasma by calculation

0.00

0.61

0.0

1.9

—

204.81

—

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

0.00

0.61

0.0

1.2

—

1.14

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

0.61

0.0

1.1

—

0.22

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

589

1.48

0.60

12.3

11.4

22.85

23.29

mg/l

0.04

405

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.58

0.54

1.0

1.1

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

1.46

0.54

2.0

2.3

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

174

1.37

0.53

2.6

3.6

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

574

1.39

0.50

14.0

12.5

75.02

73.79

umol/l

0.13

574

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

1.50

0.48

1.4

1.3

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

179

1.32

0.44

5.7

3.8

—

(4200892) Spirometry reversibility

1.65

0.44

1.0

1.4

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.55

0.42

9.6

4.6

0.58

0.77

—

(3028167) CD3+CD4+ (T4 helper) cells [#/volume] in Blood

0.00

0.41

0.0

3.5

—

572.33

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.50

0.41

9.6

4.5

1.06

1.94

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.39

0.0

1.5

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

1.41

0.39

1.2

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

217

0.78

0.35

2.6

1.8

—

(36304419) Bacteria [Presence] in Urine

147

1.29

0.35

6.3

3.4

—

(3021589) Normoblasts [#/volume] in Blood

312

1.22

0.32

6.9

11.4

0.00

e9/l

0.50

250

(3033658) Prothrombin time (PT) actual/Normal

121

1.30

0.31

3.9

6.8

83.60

83.70

0.01

121

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

103

1.31

0.30

1.1

1.5

—

(3000492) Spirometry study

1.24

0.28

1.5

1.3

—

(3042936) Bacteria identified in Isolate by Culture

0.66

0.27

1.8

—

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

1.34

0.24

2.0

2.1

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

145

1.22

0.23

1.9

1.8

—

(40758558) Short blood count panel - Blood

197

0.82

0.23

2.5

10.2

—

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

441

1.17

0.22

4.1

3.2

4.44

4.39

mmol/l

0.11

416

(3016018) Differential panel - Cerebral spinal fluid

0.00

0.21

0.0

4.1

—

(3042975) Streptococcus sp identified in Isolate by Organism specific culture

0.00

0.21

0.0

1.1

—

(3016914) Bacteria identified in Cerebral spinal fluid by Culture

0.00

0.21

0.0

1.1

—

(4062490) Immunoglobulin typing, IgG

0.00

0.21

0.0

1.3

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

2.7

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.0

—

(40761995) Spermatozoa Progressive [#/volume] in Semen

0.00

0.21

0.0

2.0

—

(3033386) Bacteria [Presence] in Cerebral spinal fluid by Light microscopy

0.00

0.21

0.0

1.2

—

(3027529) Toxoplasma gondii IgM Ab [Units/volume] in Serum

0.00

0.21

0.0

1.4

—

(3014959) Toxoplasma gondii IgG Ab [Units/volume] in Serum

0.00

0.21

0.0

2.7

—

(3032773) Endomysium IgG Ab [Titer] in Serum

0.00

0.21

0.0

1.2

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

0.21

0.0

1.4

—

(3014043) Spermatozoa Nonprogressive/100 spermatozoa in Semen

0.00

0.21

0.0

4.0

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

0.00

0.21

0.0

3.8

—

(3049717) Cytology report of Urine Cyto stain

0.00

0.21

0.0

3.0

—

(3000330) Specific gravity of Urine by Test strip

0.00

0.21

0.0

3.8

—

(3015816) F5 gene p.Arg506Gln [Presence] in Blood or Tissue by Molecular genetics method

0.00

0.21

0.0

1.0

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

0.21

0.0

1.2

—

(21494815) CD4 cells/100 lymphocytes in Specimen

0.00

0.20

0.0

4.2

—

41.39

—

(3003396) Base excess in Arterial blood by calculation

1.19

0.20

8.2

4.2

0.97

0.87

mmol/l

—

(3019832) Treponema pallidum Ab [Presence] in Serum

1.19

0.20

1.7

2.1

—

(3037522) Nuclear Ab [Titer] in Serum

1.23

0.19

1.1

1.2

—

228.57

—

(3044640) Blood type and Crossmatch panel - Blood

130

1.19

0.17

2.0

4.0

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

398

1.12

0.14

10.5

10.4

99.11

100.10

ml/min/173m2

0.08

305

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

133

1.16

0.13

4.5

3.9

18.78

21.66

ng/l

—

(3022217) INR in Platelet poor plasma by Coagulation assay

172

1.14

0.13

5.0

11.8

1.04

1.19

inr

—

(3007164) IgA [Mass/volume] in Serum or Plasma

182

1.13

0.12

1.6

1.5

1.67

2.03

g/l

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

105

1.17

0.12

1.8

4.0

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.16

0.09

9.9

11.4

25.16

24.31

mmol/l

0.38

(3017143) Hepatitis C virus Ab [Presence] in Serum

107

1.14

0.09

1.3

1.6

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

0.78

0.08

2.4

1.6

—

(3000991) Gas panel - Venous blood

0.89

0.07

10.8

8.9

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

439

1.06

0.04

4.1

3.2

1.34

1.27

mmol/l

0.50

410

(3013512) EKG study

1.10

0.03

3.1

4.3

—

(3022313) Gas panel - Capillary blood

1.10

0.03

5.9

8.1

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

422

1.04

0.02

3.9

3.0

1.34

1.29

mmol/l

0.19

396

(3023368) Bacteria identified in Blood by Culture

114

1.06

0.01

3.3

4.7

—

(3003694) ABO and Rh group [Type] in Blood

134

1.05

0.00

1.2

1.4

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

127

1.03

0.00

3.2

2.5

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

445

1.03

0.00

4.4

3.4

2.72

mmol/l

0.02

415

(46235355) HIV 1 and 2 tests - Meaningful Use set

135

0.96

0.00

3.0

2.2

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

115

1.05

0.00

3.3

2.5

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

105

0.95

0.00

5.0

4.3

20.82

22.61

—

(3048689) Calprotectin [Mass/mass] in Stool

114

0.96

0.00

2.1

3.4

86.73

135.49

ug/g

0.43

(3044941) Cell count panel - Synovial fluid

0.00

-0.00

0.0

1.2

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

-0.00

0.0

3.3

—

(3007628) Bicarbonate [Moles/volume] standard in Venous blood

1.00

-0.00

5.5

9.3

23.63

23.07

mmol/l

—

(3050238) Crystals [Presence] in Synovial fluid by Light microscopy

0.00

-0.00

0.0

1.1

—

(21493466) Plesiomonas shigelloides DNA [Presence] in Stool by NAA with non-probe detection

0.00

-0.00

0.0

2.9

—

(37021550) Renin [Units/volume] in Plasma --upright

0.00

-0.00

0.0

1.8

—

71.60

—

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

0.00

-0.00

0.0

1.3

—

(3012447) Hantavirus puumala IgG Ab [Titer] in Serum

0.00

-0.00

0.0

1.0

—

(3019897) Erythrocyte distribution width [Ratio] by Automated count

0.00

-0.00

0.0

1.1

—

12.67

—

(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

2.1

—

(37021247) Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.2

—

(3016273) Islet cell 512 Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3022493) Free Hemoglobin [Mass/volume] in Plasma

0.00

-0.00

0.0

1.7

—

77.57

—

(3024471) HLA-A [Type]

0.00

-0.00

0.0

1.0

—

(3024932) HLA-DR beta [Type]

0.00

-0.00

0.0

1.2

—

(3025468) Yersinia sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

3.2

—

(3034274) Bile acid [Moles/volume] in Serum --fasting

0.00

-0.00

0.0

4.2

—

31.35

—

(3039443) Prostate specific Ag panel - Serum or Plasma

0.00

-0.00

0.0

1.4

—

(3045142) Bone marrow Pathology biopsy report

0.00

-0.00

0.0

1.8

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

-0.00

0.0

11.3

—

(40768795) Lymph node Pathology biopsy report

0.00

-0.00

0.0

2.0

—

(3026179) Normetanephrine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

2.1

—

0.47

—

(3029493) Herpes virus 6 DNA [Presence] in Blood by NAA with probe detection

0.00

-0.00

0.0

5.6

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

0.00

-0.00

0.0

1.0

—

(21494434) Karyotype in Bone marrow

0.00

-0.00

0.0

1.5

—

(40760888) Immunoglobulin light chains.free panel - Serum

0.00

-0.00

0.0

1.8

—

(3012568) Campylobacter sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

3.2

—

(3007847) Interleukin 2 Receptor Soluble [Units/volume] in Serum or Plasma

0.00

-0.00

0.0

3.3

—

1438.17

—

(3023420) DNA double strand Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.1

—

(3035999) Lactate [Moles/volume] in Cerebral spinal fluid

0.00

-0.00

0.0

1.0

—

1.84

—

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.1

—

(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

-0.00

0.0

5.0

—

(40757349) CD3+CD4+ (T4 helper) cells/CD3+CD8+ (T8 suppressor cells) cells [# Ratio] in Blood

0.00

-0.00

0.0

1.6

—

(3010503) CD19 cells [#/volume] in Blood

0.00

-0.00

0.0

1.8

—

0.10

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

0.95

-0.00

4.4

5.7

104.00

104.53

mmol/l

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.7

—

(3041354) Potassium [Moles/volume] in Venous blood

0.00

-0.00

0.0

3.3

—

4.08

—

(40768446) Kidney Pathology biopsy report

0.00

-0.00

0.0

2.8

—

(46235689) Lupus anticoagulant aPTT, dRVVT and PT screening panel W Reflex

0.00

-0.00

0.0

2.0

—

(3007853) Bacteria identified in Skin by Aerobe culture

1.00

-0.00

1.4

1.6

—

(3021788) Differential panel - Synovial fluid

0.00

-0.00

0.0

1.2

—

(3021952) Alkaline phosphatase isoenzymes [Enzymatic activity/volume] in Serum or Plasma by Heat stability

0.00

-0.00

0.0

1.4

—

(3022229) Phosphate [Moles/volume] in Urine

0.00

-0.00

0.0

3.4

—

16.29

—

(3029713) Protein.monoclonal band 1 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

-0.00

0.0

6.6

—

0.00

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.1

—

(37020445) Astrovirus RNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.2

—

(40761849) Varicella zoster virus IgG Ab [Units/volume] in Cerebral spinal fluid by Immunoassay

0.00

-0.00

0.0

1.0

—

(3001788) Aldosterone [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.5

—

201.88

—

(3003101) Alpha 1 antitrypsin [Mass/mass] in Stool

0.00

-0.00

0.0

3.0

—

80.80

—

(3012110) Lysozyme [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

1.6

—

11.41

—

(3001684) Respiratory syncytial virus Ag [Presence] in Specimen

0.00

-0.00

0.0

1.0

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

1.3

—

(3005988) Vibrio sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

2.9

—

(3008832) Norclozapine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

14.2

—

757.67

—

(3022670) pH of Venous cord blood

0.00

-0.00

0.0

1.0

—

(3024522) Salmonella sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

3.2

—

(3036071) Salmonella sp Ab [Titer] in Serum

0.00

-0.00

0.0

1.0

—

(3038515) Glucose [Moles/volume] in Venous blood

0.00

-0.00

0.0

8.4

—

7.78

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.1

—

(40758292) HTLV I+II Ab panel - Serum

0.00

-0.00

0.0

1.6

—

(40765089) Chromosome analysis panel - Blood by G-banded

0.00

-0.00

0.0

1.0

—

(3020629) Protein S Free Ag actual/normal in Platelet poor plasma by Immunoassay

0.00

-0.00

0.0

1.0

—

93.89

—

(36660697) Celiac disease serology panel - Serum

1.00

-0.00

1.3

1.1

—

(3009340) Metanephrine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

2.1

—

(3014051) Protein [Presence] in Urine by Test strip

0.00

-0.00

0.0

2.0

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

0.93

-0.00

1.2

1.5

—

(3027901) Hemoglobin [Mass/volume] in Arterial cord blood

0.00

-0.00

0.0

1.0

—

174.67

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

-0.00

0.0

11.3

—

(42868716) Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

3.2

—

(42869457) Rotavirus RNA [Identifier] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.2

—

(3000081) cloZAPine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

31.7

—

1370.00

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

2.0

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.1

—

(3042111) Morphology [Interpretation] in Bone marrow Narrative

0.00

-0.00

0.0

1.8

—

(3046294) Neutrophil cytoplasmic Ab.classic [Titer] in Serum

0.00

-0.00

0.0

1.5

—

(37020957) Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

0.00

-0.00

0.0

2.2

—

(3035285) Chloride [Moles/volume] in Venous blood

0.00

-0.00

0.0

3.3

—

104.33

—

(3035320) C reactive protein [Mass/volume] in Body fluid

0.00

-0.00

0.0

1.2

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

0.00

-0.00

0.0

1.5

—

(3016845) Adenovirus Ag [Presence] in Specimen by Immunofluorescence

0.00

-0.00

0.0

1.0

—

(1761482) Bacteria [#/volume] in Urine by Culture

0.00

-0.00

0.0

4.3

—

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: Q17_HYPOSPADIAS_WITH_AN_INCOMPLETE_GLANS_PENIS – Hypospadias with an incomplete glans penis

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).

≡ Risteys

R13

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Hypospadias with an incomplete glans penis

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Hypospadias with an incomplete glans penis (Q17_HYPOSPADIAS_WITH_AN_INCOMPLETE_GLANS_PENIS)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints