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This is a non-core endpoint: only basic statistics are computed.

See its core counterpart C3_CML_EXALLC for full statistics.

Chronic myeloid leukaemia

C3_CML

obsolete_chronic myeloid leukemia: ['Clonal hematopoetic disorder caused by an acquired genetic defect in PLURIPOTENT STEM CELLS. It starts in MYELOID CELLS of the bone marrow, invades the blood and then other organs. The condition progresses from a stable, more indolent, chronic phase (LEUKEMIA, MYELOID, CHRONIC PHASE) lasting up to 7 years, to an advanced phase composed of an accelerated phase (LEUKEMIA, MYELOID, ACCELERATED PHASE) and BLAST CRISIS.']

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Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Cause of death: ICD-10 C92.1
  • Cause of death: ICD-9 2051A
  • Cause of death: ICD-8 20515
  • Cancer registry: Topography ICD-O-3 ANY
  • Cancer registry: Morphology ICD-O-3 9863|9875
  • Cancer registry: Behaviour codes 3

2 out of 7 registries used, show all original rules.

143

4. Check minimum number of events

None

143

5. Include endpoints

None

143

6. Filter based on genotype QC (FinnGen only)

143

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
C
First used in FinnGen datafreeze
DF8

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 143 59 84
Unadjusted period prevalence (%) 0.03 0.02 0.04
Median age at first event (years) 57.92 54.96 60.00

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
142
Matched controls
1420
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
C92.1
ICD-10 Finland
Chronic myeloid leukaemia [CML], BCR/ABL-positive
+∞
201.9
141
*
9863/3-C42.1
ICD-O-3
Chronic myeloid leukemia, NOS, of bone marrow
+∞
164.1
124
*
117
Kela drug reimbursment
Leukaemia and other malignant diseases of the blood and bone marrow, and malignant diseases of the lymphatic tissue
1087.4
158.5
135
24
189
Kela drug reimbursment
Imatinib
+∞
131.4
105
*
L01XE01
ATC
[U] imatinib; oral
+∞
105.8
88
*
XW000
NOMESCO Finland
Bone marrow biopsy
66.3
66.7
76
24
L01XX05
ATC
hydroxycarbamide; oral
312.8
60.1
57
*
M04AA01
ATC
allopurinol; systemic
25.6
60.1
98
113
L01EA01
ATC
imatinib; oral (bcr-abl tyrosine kinase inhibitors)
+∞
51.1
46
*
316
Kela drug reimbursment
Imatinib
+∞
46.4
42
*
152
Kela drug reimbursment
Nilotinib
+∞
39.4
36
*
L01XX28
ATC
[D] imatinib; oral
+∞
33.7
31
*
D72.8
ICD-10 Finland
Other specified disorders of white blood cells
79.3
32.9
36
6
C92.0
ICD-10 Finland
Acute myeloblastic leukaemia [AML]
130.8
30.0
31
*
L01XE08
ATC
[U] nilotinib; oral
+∞
28.0
26
*
150
Kela drug reimbursment
Dasatinib
+∞
28.0
26
*
L01XE06
ATC
[U] dasatinib; systemic
+∞
24.7
23
*
212
Kela drug reimbursment
Gout
39.9
23.5
29
9
328
Kela drug reimbursment
Nilotinib
+∞
20.3
19
*
L01EA03
ATC
nilotinib; oral
+∞
20.3
19
*
C91.1
ICD-10 Finland
Chronic lymphocytic leukaemia of B-cell type
60.9
18.5
21
*
L01EA02
ATC
dasatinib; oral
+∞
18.1
17
*
324
Kela drug reimbursment
Dasatinib
+∞
18.1
17
*
9875/3-C42.1
ICD-O-3
Chronic myelogenous leukemia, BCR/ABL positive of bone marrow
+∞
18.1
17
*
127
Kela drug reimbursment
Transplant complication
23.3
15.7
22
11
L03AA02
ATC
filgrastim; parenteral
15.7
14.8
24
18
D75.9
ICD-10 Finland
Disease of blood and blood-forming organs, unspecified
+∞
11.6
11
*
TNE25
NOMESCO Finland
Drill biopsy of bone marrow, pelvis
38.4
11.5
14
*
A05AA02
ATC
ursodeoxycholic acid; oral
30.7
10.9
14
5
L04AA01
ATC
[U] ciclosporin; systemic
23.7
10.9
15
7
T86.0
ICD-10 Finland
Bone-marrow transplant rejection
+∞
10.5
10
*
D72.9
ICD-10 Finland
Disorder of white blood cells, unspecified
59.0
9.8
11
*
R50.9
ICD-10 Finland
Fever, unspecified
4.4
9.7
38
109
Y84
ICD-10 Finland
Other medical procedures as the cause of abnormal reaction of the patient, or of later complication, without mention of misadventure at the time of the procedure
39.3
9.1
11
*
L03AA04
ATC
NA
95.3
8.5
9
*
170
Kela drug reimbursment
Bosutinib
+∞
8.4
8
*
C92.9
ICD-10 Finland
Myeloid leukaemia, unspecified
+∞
8.4
8
*
WW500
NOMESCO Finland
Blood transfusion
9.3
8.0
16
19
C95.0
ICD-10 Finland
Acute leukaemia of unspecified cell type
47.5
7.8
9
*
121
Kela drug reimbursment
Severe hypofunction of sexual glands
14.4
7.5
12
9
B25.8
ICD-10 Finland
Other cytomegaloviral diseases
84.1
7.5
8
*
WW200
NOMESCO Finland
Immunization
7.1
6.9
16
25
B99
ICD-10 Finland
Other and unspecified infectious diseases
17.7
6.8
10
6
FM1AE
NOMESCO Finland
Standard cardiac ultrasound examination
3.2
6.8
38
144
J01EE01
ATC
sulfamethoxazole and trimethoprim; systemic
5.1
6.6
20
44
GD1AA
NOMESCO Finland
Thorax X-ray examination
2.5
6.3
74
434
NEA10
NOMESCO Finland
Exploration of soft tissue of pelvis, percutaneous
28.0
6.3
8
*
2051A
ICD-9 Finland
Myeloid leukaemia, Chronic
+∞
6.3
6
*
JN3AE
NOMESCO Finland
Abdominal ultrasound examination
3.4
6.2
31
108
C03CA01
ATC
furosemide; systemic
2.6
6.1
55
278

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
41
11
51.85
68.22
1.8
1.0
—
—
—
0
0
45
19
34.10
65.37
2.1
2.4
—
—
—
0
0
67
97
12.11
48.88
3.6
3.0
63.2
71.3
e9/l
1.09
44
74
103
370
7.38
29.28
20.6
5.8
—
—
—
0
0
82
332
4.45
17.62
13.3
3.9
7.4
7.4
ph
—
9
64
21
9
27.06
15.63
1.1
1.3
—
—
—
0
0
106
557
4.49
15.02
17.0
7.1
1.2
1.2
mmol/l
0.53
95
467
17
20
9.51
13.54
1.2
1.4
—
—
—
0
0
31
73
5.15
12.96
1.5
1.6
—
—
—
0
0
48
167
3.82
12.02
4.1
2.3
20.9
23.9
%
0.88
39
144
37
111
4.15
11.35
6.9
4.5
2.2
0.9
%
0.91
16
41
90
508
3.08
9.66
26.7
10.4
0.0
0.0
e9/l
0.56
82
432
32
98
3.92
9.44
5.9
4.7
1.8
0.4
%
—
9
28
13
17
8.31
9.43
5.5
3.5
2.8
4.9
e9/l
2.13
13
17
11
12
9.85
9.10
1.0
1.0
—
—
—
0
0
62
296
2.93
8.86
24.0
7.5
—
—
—
0
0
13
19
7.43
8.59
5.5
3.5
51.3
56.9
%
0.57
13
19
14
23
6.64
8.35
1.1
1.5
—
—
—
0
0
36
132
3.31
8.03
1.6
1.5
—
—
—
0
0
30
98
3.61
8.00
7.5
4.7
0.1
0.3
%
0.22
13
32
57
273
2.81
7.94
2.9
2.0
2.4
3.1
mg/l
2.12
52
236
11
15
7.86
7.66
1.1
1.0
—
—
—
0
0
33
119
3.31
7.53
1.7
1.6
—
—
—
0
0
11
17
6.93
6.88
1.5
1.6
—
—
—
0
0
11
17
6.93
6.88
1.5
1.6
—
—
—
0
0
11
17
6.93
6.88
1.5
1.6
—
—
—
0
0
11
17
6.93
6.88
1.5
1.6
—
—
—
0
0
25
80
3.58
6.83
1.4
2.7
—
—
—
0
0
52
261
2.56
6.38
15.1
5.3
—
—
—
0
0
28
101
3.20
6.34
8.1
4.6
0.3
0.2
%
0.22
15
37
56
336
2.10
4.25
6.9
4.6
—
—
—
0
0
12
32
4.00
4.18
3.7
3.3
—
—
—
0
0
68
450
1.97
3.86
2.4
1.9
86.1
95.6
pmol/l
0.74
45
236
55
345
1.97
3.59
3.8
2.3
—
—
—
0
0
57
366
1.93
3.45
5.9
2.2
186.5
235.4
u/l
0.33
57
351
7
10
7.29
3.40
2.0
2.9
—
—
—
0
0
7
10
7.29
3.40
1.0
1.4
—
—
—
0
0
8
14
5.98
3.39
1.9
2.6
34.0
33.3
pg
—
8
14
31
164
2.14
3.17
1.9
2.1
—
—
—
0
0
37
216
1.96
2.90
1.7
1.4
1.9
2.9
g/l
2.67
28
120
31
171
2.04
2.83
1.8
1.6
—
—
—
0
0
67
476
1.77
2.80
5.2
9.1
1.1
1.2
inr
0.53
18
156
5
6
8.57
2.77
6.0
2.3
52.5
62.0
%
—
5
6
5
6
8.57
2.77
1.4
1.5
—
—
—
0
0
50
327
1.81
2.76
4.6
2.8
—
—
—
0
0
37
220
1.92
2.74
3.9
3.0
2.5
2.5
mmol/l
0.15
37
198
8
19
4.39
2.72
1.3
1.1
—
—
—
0
0
6
11
5.64
2.57
1.7
1.8
—
—
—
0
0
7
17
4.27
2.39
4.9
3.1
—
—
—
0
0
54
377
1.69
2.31
5.7
3.0
20.0
207.9
e6/l
0.56
48
289
5
9
5.71
2.23
1.4
1.2
—
—
—
0
0
25
139
1.97
2.23
11.4
7.8
-0.3
1.2
mmol/l
0.54
18
111
8
24
3.47
2.21
1.0
1.5
—
—
—
0
0
13
57
2.41
2.04
18.1
9.9
—
—
—
0
0
49
348
1.62
1.91
4.9
2.8
0.4
0.6
e6/l
0.59
43
254
10
40
2.61
1.88
2.5
1.6
—
—
—
0
0
7
23
3.15
1.82
2.6
1.7
—
—
—
0
0
37
250
1.65
1.74
2.0
1.7
1.5
1.3
mg/l
0.23
30
199
5
13
3.94
1.73
1.6
2.3
—
—
—
0
0
96
811
1.56
1.69
5.0
4.1
—
—
—
0
0
7
25
2.89
1.67
2.0
4.6
—
—
—
0
0
7
25
2.89
1.67
1.0
1.3
—
—
—
0
0
5
14
3.66
1.63
1.2
1.4
—
—
—
0
0
7
26
2.78
1.60
1.1
1.2
—
—
—
0
0
56
429
1.50
1.52
6.5
3.5
108.8
66.5
e6/l
0.36
50
308
108
949
1.56
1.48
51.0
18.4
14.5
13.8
%
5.80
108
932
44
323
1.52
1.45
3.7
3.4
4895.9
53.5
mg/l
1.35
34
217
6
22
2.80
1.45
2.5
3.1
—
—
—
0
0
21
129
1.74
1.39
2.3
1.7
—
—
—
0
0
110
1200
0.64
1.36
26.0
14.0
—
—
—
0
0
13
69
1.97
1.33
10.8
5.2
25.1
24.6
mmol/l
0.11
13
69
6
24
2.56
1.32
3.5
2.3
—
—
—
0
0
8
34
2.43
1.31
1.0
1.2
—
—
—
0
0
21
135
1.65
1.20
1.4
1.4
—
—
—
0
0
0
33
0.00
1.18
0.0
3.1
—
1.5
—
0
33
15
89
1.77
1.13
5.8
4.5
—
—
—
0
0
18
113
1.68
1.12
15.7
6.6
—
—
—
0
0
5
21
2.43
1.10
1.8
2.1
—
—
—
0
0
54
433
1.40
1.10
2.3
2.0
—
—
—
0
0
9
47
1.98
1.04
1.3
1.2
—
—
—
0
0
5
22
2.32
1.04
2.2
1.0
—
—
—
0
0
16
100
1.68
1.02
1.3
1.3
—
—
—
0
0
0
31
0.00
0.97
0.0
3.2
—
7.8
—
0
31
34
256
1.43
0.97
3.2
3.8
—
—
—
0
0
32
414
0.71
0.93
3.1
2.9
—
—
—
0
0
10
56
1.84
0.90
2.8
2.2
—
—
—
0
0
10
56
1.84
0.90
3.8
1.7
4.1
5.6
ug/l
—
10
51
85
757
1.30
0.79
5.3
4.4
—
—
—
0
0
5
23
2.21
0.77
2.2
2.2
—
—
—
0
0
14
93
1.56
0.72
2.3
1.5
—
—
—
0
0
29
366
0.74
0.71
2.6
3.9
—
—
—
0
0
42
345
1.31
0.70
4.3
4.2
18.4
8.5
mg/mmol
0.39
29
223
5
27
1.88
0.69
1.4
1.9
—
3.4
—
0
10
17
121
1.46
0.66
7.4
3.4
—
—
—
0
0
7
111
0.61
0.61
1.1
1.6
—
—
—
0
0
0
20
0.00
0.61
0.0
2.8
—
—
—
0
0
0
20
0.00
0.61
0.0
2.8
—
4.1
—
0
20
0
20
0.00
0.61
0.0
2.8
—
105.9
—
0
20
11
73
1.55
0.58
2.9
2.0
—
—
—
0
0
21
161
1.36
0.56
16.3
6.6
105.7
104.2
mmol/l
0.84
21
156
18
138
1.35
0.48
1.4
1.3
—
—
—
0
0
8
56
1.45
0.43
1.8
1.5
—
—
—
0
0
8
58
1.40
0.42
4.3
3.4
—
—
—
0
0
0
16
0.00
0.41
0.0
1.1
—
—
—
0
0
19
151
1.30
0.41
28.1
20.9
—
1.2
—
0
18
14
106
1.36
0.41
3.2
3.6
—
—
—
0
0
5
34
1.49
0.41
2.2
1.5
—
—
—
0
0
8
61
1.33
0.40
2.5
4.2
—
—
—
0
0
6
43
1.41
0.35
3.8
2.6
—
—
—
0
0
62
568
1.16
0.35
4.0
3.8
0.0
0.0
estimate
—
10
104
6
46
1.32
0.33
1.2
1.1
—
—
—
0
0
28
318
0.85
0.27
4.3
3.6
—
—
—
0
0
25
286
0.85
0.27
2.6
2.9
0.7
0.7
ug/l
0.04
16
181
60
560
1.12
0.24
5.1
5.3
0.0
0.0
estimate
0.00
11
108
7
91
0.76
0.23
1.9
1.4
—
—
—
0
0
5
39
1.29
0.23
1.0
1.1
—
—
—
0
0
106
1026
1.13
0.21
44.1
15.6
37.8
40.0
%
2.44
83
742
0
11
0.00
0.21
0.0
1.6
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
20.8
—
0
10
118
1150
1.15
0.21
36.2
14.9
19.3
23.3
mg/l
0.91
106
909
0
14
0.00
0.20
0.0
1.6
—
—
—
0
0
10
81
1.25
0.19
1.0
1.1
—
—
—
0
0
59
561
1.09
0.15
3.9
3.8
0.0
0.0
estimate
—
9
112
9
108
0.82
0.13
1.4
2.8
5.2
8.7
ug/l
—
9
97
119
1207
0.92
0.10
43.6
17.7
95.0
79.9
umol/l
2.36
119
1207
46
480
0.94
0.09
2.7
3.9
22.6
40.4
ng/l
1.38
35
351
7
63
1.12
0.08
1.1
1.3
—
—
—
0
0
15
137
1.11
0.08
1.2
1.3
—
—
—
0
0
6
72
0.83
0.08
1.3
1.2
—
—
—
0
0
34
324
1.06
0.07
4.0
3.1
—
—
—
0
0
9
83
1.09
0.07
1.6
1.3
—
—
—
0
0
30
315
0.94
0.07
5.0
3.9
0.0
0.0
estimate
—
9
103
9
101
0.88
0.06
9.1
5.1
—
—
—
0
0
9
103
0.87
0.06
5.2
3.1
1.2
1.2
mmol/l
—
9
86
48
489
0.97
0.02
4.6
4.8
1.9
2.1
ug/l
0.24
43
428
20
199
1.01
0.00
1.2
1.2
18.4
44.6
iu/ml
—
6
59
30
297
1.01
0.00
1.4
1.4
—
—
—
0
0
16
155
1.04
0.00
1.2
1.3
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
9
0.00
0.00
0.0
8.4
—
0.6
—
0
9
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.7
—
7.9
—
0
7
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
6
63
0.95
0.00
3.5
2.7
0.9
1.3
%
—
6
63
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
0
9
0.00
0.00
0.0
3.2
—
—
—
0
0
0
5
0.00
0.00
0.0
4.6
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.4
—
9.1
—
0
7
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
0.00
0.0
1.9
—
—
—
0
0
6
60
1.00
0.00
3.5
2.7
0.5
0.8
%
—
6
60
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
7
79
0.88
0.00
3.6
3.5
106.0
132.2
g/l
—
7
79
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
0
5
0.00
0.00
0.0
2.4
—
6.4
—
0
5
0
7
0.00
0.00
0.0
1.9
—
—
—
0
0
0
9
0.00
0.00
0.0
1.9
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.6
—
1.9
—
0
5
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
9
98
0.91
0.00
4.0
3.2
—
—
—
0
0

Mortality – FinRegistry

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

Index endpoint: C3_CML – Chronic myeloid leukaemia

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).