Idiopathic progressive neuropathy

G6_IPNEUROP

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 G60.3
  • Hospital discharge: ICD-9 3564A
  • Cause of death: ICD-10 G60.3
  • Cause of death: ICD-9 3564A

2 out of 7 registries used, show all original rules.

54

4. Check minimum number of events

None

54

5. Include endpoints

None

54

6. Filter based on genotype QC (FinnGen only)

54

Control definitions (FinnGen only)

Control exclude
G6_POLYNEU

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
G60
Name in latin
Neuropathia progressiva idiopathica

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 509 207 286
Only index persons 283 119 164
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.00 0.01
Median age at first event (years)
Whole population 66.12 66.65 65.56
Only index persons 57.39 56.76 57.85

-FinnGen-

Key figures

All Female Male
Number of individuals 54 23 31
Unadjusted period prevalence (%) 0.01 0.01 0.01
Median age at first event (years) 57.08 57.78 56.55

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS (R11)

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

No data available

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum
11
18
7.42
6.72
2.8
2.2
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
32
163
3.36
4.55
3.1
3.6
—
—
—
0
0
(3000330) Specific gravity of Urine by Test strip
9
14
7.46
4.18
6.6
4.8
—
—
—
0
0
(3038515) Glucose [Moles/volume] in Venous blood
7
7
11.24
4.14
4.4
5.3
mmol/l
7.5
8.4
—
7
7
(3004119) Hemoglobin [Mass/volume] in Venous blood
10
24
4.89
4.08
3.5
3.1
g/l
133.1
122.8
—
10
24
(3024354) Oxygen [Partial pressure] in Venous blood
12
34
4.25
4.03
4.2
4.2
kpa
4.7
4.5
0.12
12
34
(3008037) Lactate [Moles/volume] in Venous blood
7
8
9.82
3.89
4.4
4.8
mmol/l
1.7
1.5
—
7
8
(3030467) Casts [#/volume] in Urine by Automated count
25
122
2.95
3.64
3.5
3.3
e6/l
0.1
0.3
1.10
20
97
(3012544) pH of Venous blood
12
37
3.88
3.59
4.4
4.1
—
—
—
0
0
(3021447) Carbon dioxide [Partial pressure] in Venous blood
12
38
3.77
3.46
4.4
4.0
kpa
5.9
5.4
0.80
12
38
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
16
62
3.25
3.42
2.4
3.3
e6/l
0.5
1.1
1.11
11
40
(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood
9
21
4.92
3.16
4.6
4.1
%
59.3
54.3
—
9
21
(3027273) Bicarbonate [Moles/volume] in Venous blood
9
21
4.92
3.16
3.9
4.1
mmol/l
27.0
23.2
—
9
21
(36304419) Bacteria [Presence] in Urine
23
115
2.74
3.11
3.3
3.4
—
—
—
0
0
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
8
17
5.32
3.05
1.1
1.7
—
—
—
0
0
(3004588) Protein electrophoresis panel - Serum or Plasma
11
36
3.58
3.00
1.3
2.5
—
—
—
0
0
(1761482) Bacteria [#/volume] in Urine by Culture
6
9
7.33
2.95
8.2
6.1
—
—
—
0
0
(3020630) Protein [Mass/volume] in Serum or Plasma
11
38
3.38
2.77
1.4
3.4
g/l
68.7
67.7
0.16
11
32
(3018095) Leukocytes [#/volume] in Urine
27
155
2.48
2.69
4.1
4.2
e6/l
11.2
48.1
1.61
22
117
(3037467) Urinalysis macro (dipstick) panel - Urine
40
279
2.67
2.58
6.5
4.5
—
—
—
0
0
(3037756) Immunofixation for Serum or Plasma
5
8
6.74
2.42
1.0
1.1
—
—
—
0
0
(3009445) Proteinase 3 Ab [Units/volume] in Serum
6
14
4.68
2.21
1.0
1.1
—
—
—
0
0
(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection
9
31
3.27
2.19
1.8
1.4
—
—
—
0
0
(3000850) Epithelial cells [#/volume] in Urine
19
101
2.36
2.16
2.9
3.0
e6/l
4.4
4.3
0.04
19
89
(3007853) Bacteria identified in Skin by Aerobe culture
11
46
2.75
2.00
1.9
2.0
—
—
—
0
0
(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood
7
22
3.50
1.95
3.1
2.9
%
1.1
1.2
—
7
22
(3024889) Methemoglobin/Hemoglobin.total in Venous blood
7
22
3.50
1.95
3.1
2.9
%
0.8
0.8
—
7
22
(3019150) Specific gravity of Urine by Refractometry
17
90
2.30
1.92
6.0
5.3
kg/l
1.0
1.0
—
9
11
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
13
61
2.49
1.90
2.6
3.5
e6/l
0.1
2.1
—
8
39
(3015736) pH of Urine
25
156
2.12
1.90
7.3
4.1
—
—
—
0
0
(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma
20
115
2.17
1.86
2.2
3.2
u/l
28.6
36.5
0.63
20
109
(3023368) Bacteria identified in Blood by Culture
21
128
2.05
1.66
4.7
4.7
—
—
—
0
0
(40768797) Stomach Pathology biopsy report
11
52
2.40
1.57
1.5
1.3
—
—
—
0
0
(46235355) HIV 1 and 2 tests - Meaningful Use set
10
46
2.44
1.50
1.2
1.7
—
—
—
0
0
(40761535) Cells panel - Urine sediment
9
41
2.43
1.45
3.3
3.9
—
—
—
0
0
(42870588) Differential panel, method unspecified - Blood
21
137
1.87
1.32
5.3
4.7
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
15
88
1.98
1.28
1.9
2.2
—
—
—
0
0
(3021960) Folate [Moles/volume] in Serum or Plasma
18
113
1.89
1.27
1.6
1.5
nmol/l
17.6
21.0
0.31
18
95
(3041096) Erythrocytes [Presence] in Urine by Automated
18
113
1.89
1.27
5.9
3.8
—
—
—
0
0
(3018010) Neutrophils/100 leukocytes in Blood
27
195
1.77
1.21
6.0
5.1
%
59.4
57.7
0.37
27
188
(3042936) Bacteria identified in Isolate by Culture
10
52
2.13
1.15
1.8
2.0
—
—
—
0
0
(3013512) EKG study
21
143
1.77
1.13
6.3
4.6
—
—
—
0
0
(3013826) Glucose [Moles/volume] in Serum or Plasma
34
266
1.75
1.12
3.7
4.7
mmol/l
6.8
6.7
0.12
34
252
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
9
45
2.20
1.12
1.1
1.4
—
—
—
0
0
(3000494) Fungus identified in Specimen by Culture
9
45
2.20
1.12
1.2
1.5
—
—
—
0
0
(3006504) Eosinophils/100 leukocytes in Blood
26
192
1.68
1.03
6.1
5.2
%
2.6
2.8
0.12
26
183
(3019069) Monocytes/100 leukocytes in Blood
26
193
1.67
1.01
6.2
5.5
%
9.3
8.7
0.39
26
184
(3030981) Hyaline casts [#/volume] in Urine by Automated count
6
27
2.37
0.97
2.2
3.8
e6/l
0.2
0.1
—
6
27
(3022313) Gas panel - Capillary blood
6
29
2.20
0.92
5.2
4.2
—
—
—
0
0
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
24
178
1.63
0.91
4.5
4.2
—
—
—
0
0
(40760892) CBC W Ordered Manual Differential panel - Blood
14
90
1.75
0.89
3.3
4.9
—
—
—
0
0
(3026008) Bacteria identified in Urine by Culture
18
125
1.66
0.88
5.0
3.1
—
—
—
0
0
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
22
162
1.60
0.85
7.5
4.4
—
—
—
0
0
(3026782) Osmolality of Urine
14
93
1.68
0.79
3.9
3.2
mosm/kgh2o
586.7
576.3
0.05
14
78
(3007164) IgA [Mass/volume] in Serum or Plasma
12
77
1.72
0.76
1.9
1.4
g/l
2.9
3.4
—
7
40
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
7
39
1.91
0.76
2.6
1.6
—
—
—
0
0
(3028026) IgM [Mass/volume] in Serum or Plasma
5
25
2.10
0.75
2.2
1.3
g/l
2.2
1.1
—
5
19
(3026493) Urate [Moles/volume] in Serum or Plasma
16
112
1.61
0.75
2.6
2.9
umol/l
304.0
4203.5
0.50
16
84
(3017143) Hepatitis C virus Ab [Presence] in Serum
7
42
1.76
0.71
1.0
1.4
—
—
—
0
0
(3005719) IgG [Mass/volume] in Serum or Plasma
5
27
1.94
0.70
4.0
2.0
g/l
14.3
9.8
—
5
22
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
23
179
1.50
0.67
2.3
1.9
pmol/l
98.5
93.8
0.23
18
92
(3044889) 12 lead EKG panel
25
301
0.68
0.63
4.0
4.2
—
—
—
0
0
(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma
5
30
1.73
0.63
1.0
2.5
%
1.3
1.5
—
5
20
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
0
20
0.00
0.62
0.0
1.7
—
—
—
0
0
(43055554) Base excess.100% oxygenated [Moles/volume] standard in Capillary blood by calculation
6
34
1.86
0.61
5.8
4.5
mmol/l
2.8
1.8
—
6
28
(3014111) Lactate [Moles/volume] in Serum or Plasma
6
35
1.80
0.60
1.3
4.5
mmol/l
1.4
1.6
—
6
35
(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma
10
66
1.63
0.57
6.1
8.2
—
—
—
0
0
(3000991) Gas panel - Venous blood
6
38
1.65
0.56
3.7
5.8
—
—
—
0
0
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
6
39
1.60
0.55
3.3
1.2
—
—
—
0
0
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
7
45
1.64
0.51
1.3
1.5
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
16
124
1.41
0.45
2.1
2.4
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
24
200
1.36
0.45
2.4
2.5
—
—
—
0
0
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
5
31
1.67
0.44
1.6
1.3
—
—
—
0
0
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
5
33
1.57
0.42
1.2
1.4
—
—
—
0
0
(3012501) Base excess in Blood by calculation
0
16
0.00
0.42
0.0
2.3
—
3.0
—
0
11
(3027315) Oxygen [Partial pressure] in Blood
0
16
0.00
0.42
0.0
2.3
—
7.7
—
0
16
(3013290) Carbon dioxide [Partial pressure] in Blood
0
16
0.00
0.42
0.0
2.3
—
5.3
—
0
16
(3014218) Bicarbonate [Moles/volume] standard in Arterial blood
0
18
0.00
0.40
0.0
6.7
—
25.0
—
0
18
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
6
41
1.52
0.37
3.3
1.8
—
—
—
0
0
(3009542) Hematocrit [Volume Fraction] of Blood
38
346
1.33
0.36
21.4
16.3
%
34.5
39.4
0.95
19
224
(3036481) Cortisol [Moles/volume] in Serum or Plasma
6
46
1.34
0.34
2.5
1.7
nmol/l
389.3
358.3
—
6
40
(3005772) Bilirubin.conjugated [Moles/volume] in Serum or Plasma
6
46
1.34
0.34
1.2
2.7
umol/l
5.8
10.3
—
6
37
(3019225) pH of Specimen
6
46
1.34
0.34
2.7
4.6
—
—
—
0
0
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
8
61
1.36
0.30
2.9
1.9
—
—
—
0
0
(3000963) Hemoglobin [Mass/volume] in Blood
43
454
0.74
0.29
33.0
23.6
g/l
130.5
133.7
0.88
43
448
(3035941) MCH [Entitic mass]
43
454
0.74
0.29
32.8
23.4
pg
30.2
30.4
0.20
43
448
(3022217) INR in Platelet poor plasma by Coagulation assay
8
65
1.27
0.29
61.1
32.5
—
1.5
—
0
6
(3007461) Platelets [#/volume] in Blood
43
453
0.75
0.27
33.0
23.5
e9/l
247.8
244.6
0.10
43
445
(3003694) ABO and Rh group [Type] in Blood
11
87
1.33
0.27
1.5
1.4
—
—
—
0
0
(3024731) MCV [Entitic volume]
43
453
0.75
0.27
32.8
23.5
fl
91.1
91.4
0.12
43
447
(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma
6
82
0.70
0.26
6.3
3.5
mmol/l
2.5
2.5
—
6
70
(40768804) Tissue Pathology biopsy report
14
164
0.80
0.22
2.3
2.1
—
—
—
0
0
(3002256) Pathology report gross observation
5
42
1.21
0.22
1.0
1.2
—
—
—
0
0
(3001019) Free T4 and TSH panel - Serum or Plasma
0
11
0.00
0.21
0.0
1.3
—
—
—
0
0
(3052851) Hemolysis interference index of Serum or Plasma
0
11
0.00
0.21
0.0
3.9
—
—
—
0
0
(36305247) Microscopic observation [Identifier] in Isolate by Gram stain
0
10
0.00
0.21
0.0
1.7
—
—
—
0
0
(3024403) Complement+Immunoglobulin [Units/volume] in Red Blood Cells
0
13
0.00
0.21
0.0
2.6
—
—
—
0
0
(3022145) Colonoscopy Study observation
6
50
1.22
0.20
1.5
1.3
—
—
—
0
0
(4034850)
0
14
0.00
0.20
0.0
20.8
—
—
—
0
0
(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma
0
14
0.00
0.20
0.0
1.5
—
—
—
0
0
(3002385) Erythrocyte distribution width [Ratio]
36
340
1.18
0.16
22.8
19.7
%
13.7
13.7
0.01
36
333
(3018418) pH of Serum or Plasma
14
124
1.17
0.13
3.4
4.5
—
7.4
—
0
28
(4035726)
5
48
1.05
0.09
1.0
1.3
—
—
—
0
0
(1761868) Lipid panel - Serum or Plasma
15
138
1.12
0.07
3.1
3.4
—
—
—
0
0
(40761511) CBC panel - Blood by Automated count
42
428
0.92
0.03
19.1
16.3
—
—
—
0
0
(3019550) Sodium [Moles/volume] in Serum or Plasma
43
433
0.97
0.00
25.2
18.8
mmol/l
139.8
139.6
0.19
43
418
(40758558) Short blood count panel - Blood
10
105
0.94
0.00
9.9
6.9
—
—
—
0
0
(3023103) Potassium [Moles/volume] in Serum or Plasma
43
435
0.94
0.00
24.6
18.6
mmol/l
4.0
4.0
0.38
43
420
(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma
11
112
0.98
0.00
3.5
2.7
ug/l
1.3
0.8
0.45
11
80
(3030905) Polymorphonuclear cells [#/volume] in Blood
0
7
0.00
0.00
0.0
1.6
—
4.3
—
0
7
(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum
0
7
0.00
0.00
0.0
1.1
—
—
—
0
0
(4146454)
0
7
0.00
0.00
0.0
2.7
—
—
—
0
0
(42529200) Cancer Ag 15-3 [Units/volume] in Serum or Plasma by Immunoassay
0
7
0.00
0.00
0.0
5.1
—
142.9
—
0
7
(3032035) Polymorphonuclear cells/100 leukocytes in Blood
0
7
0.00
0.00
0.0
1.9
—
60.6
—
0
7
(3022806) Fractional oxyhemoglobin in Capillary blood
0
8
0.00
0.00
0.0
1.1
—
90.0
—
0
8
(3024928) Oxygen saturation in Venous blood
0
7
0.00
0.00
0.0
2.0
—
—
—
0
0
(3018559) Microscopic observation [Identifier] in Buccal smear by Cyto stain
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
(3027456) Digoxin [Moles/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
3.2
—
0.7
—
0
6
(3011397) Hemoglobin [Presence] in Urine by Test strip
9
90
1.00
0.00
8.8
4.2
—
—
—
0
0
(3017569) Oxygen content in Arterial blood
0
5
0.00
0.00
0.0
14.6
—
—
—
0
0
(3048821) Cortisol [Moles/volume] in Serum or Plasma --post 1 mg dexamethasone PO overnight
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(40768806) Pleura Pathology biopsy report
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3023419) Bacteria identified in Sputum by Culture
0
6
0.00
0.00
0.0
1.8
—
—
—
0
0
(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3010156) C reactive protein [Mass/volume] in Serum or Plasma by High sensitivity method
0
9
0.00
0.00
0.0
1.6
—
5.3
—
0
9
(3005570) Glucose [Moles/volume] in Urine
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
(3042631) Mycobacterium sp identified in Specimen
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3034274) Bile acid [Moles/volume] in Serum --fasting
0
5
0.00
0.00
0.0
3.0
—
10.0
—
0
5
(3016244) Insulin [Units/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.8
—
11.3
—
0
5
(3045424) Erythrocytes [Presence] in Urine
0
9
0.00
0.00
0.0
1.2
—
—
—
0
0

Mortality – FinRegistry

Association

Association between endpoint G6_IPNEUROP and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have G6_IPNEUROP.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

Index endpoint: G6_IPNEUROP – Idiopathic progressive neuropathy

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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