Disorders of muscle tone of newborn

P16_DISORD_MUSCLE_TONE_NEWBO

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519972

1. Apply sex-specific rule

None

519972

2. Check conditions

None

519972

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 P94
  • Cause of death: ICD-10 P94

2 out of 7 registries used, show all original rules.

62

4. Check minimum number of events

None

62

5. Include endpoints

None

62

6. Filter based on genotype QC (FinnGen only)

56

Control definitions (FinnGen only)

Control exclude
P16_OTH_DISORD_ORIGINA_PERINA_PERIOD

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
P9
Name in latin
Dystonia muscularis neonati

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 2823 1183 1638
Only index persons 1569 650 919
Unadjusted period prevalence (%)
Whole population 0.04 0.03 0.05
Only index persons 0.03 0.02 0.04
Median age at first event (years)
Whole population 0.24 0.19 0.19
Only index persons 0.33 0.36 0.31

-FinnGen-

Key figures

All Female Male
Number of individuals 56 26 30
Unadjusted period prevalence (%) 0.01 0.01 0.01
Median age at first event (years) 0.56 0.68 0.46

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
62
Matched controls
620
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
P94.2
ICD-10 Finland
Congenital hypotonia
727.3
38.4
34
*
P94.1
ICD-10 Finland
Congenital hypertonia
+∞
15.2
14
*
R62.0
ICD-10 Finland
Delayed milestone
8.0
12.7
22
40
R62.8
ICD-10 Finland
Other lack of expected normal physiological development
29.1
9.3
12
5
P94.9
ICD-10 Finland
Disorder of muscle tone of newborn, unspecified
+∞
8.5
8
*
F79.0
ICD-10 Finland
Unspecified mental retardation, with the statement of no, or minimal, impairment of behaviour
20.8
8.5
12
7
Z50.8
ICD-10 Finland
Care involving use of other rehabilitation procedures
7.1
6.9
17
31
Z3226
NOMESCO Finland
Physiotherapist
4.2
6.8
27
97
R4110
NOMESCO Finland
Physiotherapy
4.0
6.8
30
117
P94.0
ICD-10 Finland
Transient neonatal myasthenia gravis
+∞
6.3
6
*
P94.8
ICD-10 Finland
Other disorders of muscle tone of newborn
+∞
6.3
6
*
Z01.0
ICD-10 Finland
Examination of eyes and vision
4.0
6.3
25
89
P85
ICPC
Mental retardation
12.9
6.0
10
9

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
28
142
2.77
3.68
5.6
3.3
—
—
—
0
0
20
105
2.34
2.29
4.5
3.2
—
—
—
0
0
5
9
5.93
2.25
5.6
3.6
—
—
—
0
0
54
442
2.72
2.17
25.4
16.7
4.02
4.00
mmol/l
0.14
54
426
54
443
2.69
2.16
23.4
16.8
139.20
139.32
mmol/l
0.16
54
431
26
163
2.02
1.88
5.7
4.8
11.45
37.80
e6/l
0.80
19
127
35
244
2.00
1.88
13.5
19.2
1.24
1.24
mmol/l
0.01
35
229
5
13
4.08
1.75
1.6
4.6
—
—
—
0
0
21
125
2.03
1.72
9.2
13.8
—
—
—
0
0
23
143
1.97
1.67
10.9
21.1
24.21
24.61
mmol/l
0.32
23
143
38
280
1.92
1.66
11.0
5.5
129.66
128.69
u/l
0.03
38
262
27
178
1.92
1.65
8.5
8.1
—
—
—
0
0
44
341
2.00
1.65
4.0
3.1
14.37
14.47
pmol/l
0.07
36
311
20
119
2.00
1.63
6.0
12.2
23.10
23.32
mmol/l
0.25
20
119
18
103
2.05
1.63
4.7
4.0
—
—
—
0
0
11
51
2.41
1.62
1.8
1.8
—
—
—
0
0
23
146
1.91
1.56
5.3
4.3
0.14
0.09
e6/l
0.24
16
111
23
148
1.88
1.49
4.7
4.3
—
—
—
0
0
6
22
2.91
1.47
2.3
1.6
—
—
—
0
0
20
126
1.87
1.36
9.3
14.7
—
—
—
0
0
19
118
1.88
1.35
10.3
14.5
—
—
—
0
0
29
206
1.77
1.34
8.8
5.7
0.00
0.00
estimate
—
5
42
38
293
1.77
1.32
5.9
4.5
—
—
—
0
0
5
18
2.93
1.31
1.2
1.9
63.90
59.41
g/l
—
5
18
27
191
1.73
1.25
8.0
5.7
19.82
29.75
e6/l
0.38
19
129
54
471
2.13
1.25
14.1
9.7
—
—
—
0
0
5
19
2.77
1.24
3.8
17.0
—
—
—
0
0
29
210
1.72
1.23
5.3
4.1
0.00
0.00
estimate
—
5
43
8
39
2.20
1.20
5.5
2.9
63.99
95.52
mg/l
—
8
29
7
30
2.50
1.16
1.3
1.5
—
—
—
0
0
7
32
2.33
1.12
21.6
6.0
0.36
0.33
g/l
—
7
26
7
32
2.33
1.12
2.4
2.0
—
—
—
0
0
7
35
2.12
1.04
3.3
3.3
—
—
—
0
0
9
51
1.89
1.00
3.6
2.8
—
—
—
0
0
0
32
0.00
0.98
0.0
1.3
—
—
—
0
0
7
37
2.00
0.97
1.3
1.2
—
—
—
0
0
12
71
1.86
0.97
1.3
2.3
—
—
—
0
0
6
29
2.18
0.92
2.2
1.3
—
—
—
0
0
6
29
2.18
0.92
1.5
1.7
—
—
—
0
0
19
132
1.63
0.90
10.4
13.0
23.42
24.23
mmol/l
1.42
19
132
17
116
1.64
0.86
1.8
2.6
—
—
—
0
0
9
142
0.57
0.82
2.3
2.0
—
—
—
0
0
9
52
1.85
0.81
1.3
1.8
—
462.22
—
0
9
37
308
1.50
0.77
11.1
11.1
0.18
0.22
e9/l
0.56
32
254
54
490
1.79
0.74
21.3
13.0
22.33
22.57
mg/l
0.02
41
357
36
300
1.48
0.73
10.9
10.2
0.60
0.59
e9/l
0.15
31
246
36
300
1.48
0.73
10.9
10.2
0.04
0.04
e9/l
0.36
31
246
17
121
1.56
0.72
11.1
7.6
1.12
1.26
inr
—
6
31
5
26
2.00
0.72
1.4
1.7
—
—
—
0
0
5
28
1.85
0.67
1.0
1.2
—
—
—
0
0
37
313
1.45
0.67
10.9
10.0
3.39
2.37
e9/l
0.45
32
263
26
206
1.45
0.67
1.7
1.6
1.47
1.54
g/l
0.08
14
107
35
294
1.44
0.66
11.5
10.3
2.39
3.17
%
1.41
35
283
14
98
1.55
0.63
1.3
1.2
—
—
—
0
0
14
98
1.55
0.63
5.4
3.6
562.79
582.29
mosm/kgh2o
0.14
14
84
0
20
0.00
0.61
0.0
1.7
—
4.96
—
0
14
0
19
0.00
0.61
0.0
1.2
—
—
—
0
0
0
22
0.00
0.60
0.0
1.0
—
—
—
0
0
0
22
0.00
0.60
0.0
1.0
—
—
—
0
0
35
297
1.41
0.60
11.7
10.4
7.44
8.40
%
1.16
35
288
36
307
1.41
0.60
11.4
9.9
49.58
48.69
%
0.13
36
297
0
23
0.00
0.59
0.0
3.2
—
—
—
0
0
24
191
1.42
0.59
2.3
2.3
—
—
—
0
0
38
329
1.40
0.57
13.7
11.9
4.26
3.66
e9/l
0.75
33
272
34
289
1.39
0.57
11.6
11.1
—
—
—
0
0
21
165
1.41
0.55
1.7
1.7
—
—
—
0
0
6
40
1.55
0.53
2.0
1.3
—
—
—
0
0
36
313
1.36
0.50
11.5
10.0
34.83
35.90
%
0.16
36
304
10
70
1.51
0.45
5.5
6.8
6.00
5.83
umol/l
—
10
64
5
31
1.67
0.44
1.6
25.5
0.52
0.61
%
—
5
31
0
15
0.00
0.42
0.0
4.5
—
—
—
0
0
5
76
0.63
0.38
1.0
2.1
—
—
—
0
0
7
51
1.42
0.33
1.3
1.4
—
—
—
0
0
13
103
1.33
0.31
3.5
4.1
1.02
1.01
kg/l
—
5
15
11
85
1.36
0.30
1.8
1.5
97.50
94.91
pmol/l
—
6
46
9
76
1.22
0.26
2.8
2.0
—
—
—
0
0
33
301
1.21
0.24
16.7
11.4
0.37
0.00
e9/l
0.49
27
229
14
117
1.25
0.23
1.9
1.8
—
—
—
0
0
9
110
0.79
0.22
1.6
1.7
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.1
—
—
—
0
0
0
13
0.00
0.21
0.0
1.5
—
—
—
0
0
8
72
1.13
0.17
3.8
14.3
103.25
105.35
mmol/l
—
8
72
5
44
1.15
0.10
1.0
1.0
20.60
19.26
mmol/l
—
5
44
5
44
1.15
0.10
1.0
1.0
—
—
—
0
0
7
79
0.87
0.07
1.7
1.4
—
—
—
0
0
13
120
1.11
0.05
5.3
3.4
—
—
—
0
0
14
143
0.97
0.00
1.5
2.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
7
0.00
-0.00
0.0
6.1
—
1.71
—
0
7
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
12.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
34.4
—
0.69
—
0
5
0
9
0.00
-0.00
0.0
5.4
—
4.36
—
0
9
0
8
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
9.2
—
0.56
—
0
5
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
6
0.00
-0.00
0.0
5.2
—
0.47
—
0
6
0
7
0.00
-0.00
0.0
3.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
14.2
—
9.45
—
0
8
0
9
0.00
-0.00
0.0
1.7
—
5.35
—
0
9
0
5
0.00
-0.00
0.0
5.8
—
—
—
0
0

Mortality – FinRegistry

Association

Association between endpoint P16_DISORD_MUSCLE_TONE_NEWBO and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have P16_DISORD_MUSCLE_TONE_NEWBO.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

Index endpoint: P16_DISORD_MUSCLE_TONE_NEWBO – Disorders of muscle tone of newborn

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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