Upper arm

Z21_UPPER_ARM

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — ZA2.0 Cause of death: ICD-10 — ZA2.0 2 out of 7 registries used, show all original rules.	73
4. Check minimum number of events None	73
5. Include endpoints None	73
6. Filter based on genotype QC (FinnGen only)	73

Control definitions (FinnGen only)

Control exclude: Z21_ADDIT_CODES_LOCAT_DEFECT_INJURY_ILLNE

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: Z[AB]

NAME	Z21_UPPER_ARM
CONTROL_EXCLUDE	Z21_ADDIT_CODES_LOCAT_DEFECT_INJURY_ILLNE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	ZA20
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	ZA20
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Upper arm based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	73	35	38
Unadjusted period prevalence (%)	0.01	0.01	0.02
Median age at first event (years)	55.71	50.20	60.79

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
63: Matched controls
632

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

ZA2.0

ICD-10 Finland

Upper arm

+∞

90.4

NC1AA

NOMESCO Finland

Elbow X-ray examination without contrast

14.5

6.9

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

4.09

7.12

4.0

2.7

97.68

250.97

ng/l

0.49

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

7.44

6.99

1.7

2.5

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

6.28

5.49

1.8

2.1

—

(3022217) INR in Platelet poor plasma by Coagulation assay

2.69

2.84

7.3

27.7

1.23

1.31

inr

—

(3003327) Ova and parasites identified in Stool by Light microscopy

4.43

2.42

1.0

1.3

—

(3005785) Creatine kinase.MB [Mass/volume] in Serum or Plasma

2.80

2.32

2.8

2.3

1.88

5.40

ug/l

2.60

(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma

3.06

2.08

7.7

1.6

256.72

101.67

ng/l

—

(3002582) Erythrocytes [#/volume] in Urine

168

1.96

1.92

2.3

3.2

28.55

77.44

e6/l

0.61

132

(40768797) Stomach Pathology biopsy report

2.24

1.73

1.1

1.2

—

(3018095) Leukocytes [#/volume] in Urine

191

1.86

1.71

2.7

3.7

24.55

51.91

e6/l

0.44

137

(3013139) Helicobacter pylori Ag [Presence] in Stool

2.98

1.69

1.3

—

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

435

1.93

1.64

3.7

14.28

14.75

pmol/l

0.71

392

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

135

1.90

1.60

1.9

2.3

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

277

1.78

1.59

5.0

3.9

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

367

1.79

1.53

6.8

10.0

4.22

3.85

e9/l

0.39

324

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

597

2.49

1.47

18.3

12.4

21.96

20.55

mg/l

0.15

470

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

1.95

1.39

1.3

1.2

22.68

6.76

u/ml

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

213

1.69

1.32

1.8

1.9

96.79

97.15

pmol/l

0.02

115

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

137

1.75

1.24

1.8

1.7

—

(3025941) Bacteria identified in Stool by Culture

2.42

1.21

1.2

1.3

—

(3026008) Bacteria identified in Urine by Culture

155

1.71

1.21

2.7

2.9

—

(3005772) Bilirubin.conjugated [Moles/volume] in Serum or Plasma

1.98

1.10

1.5

2.6

6.00

7.94

umol/l

0.36

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

1.86

1.07

2.3

1.7

—

(3031040) Bacteria [#/volume] in Urine by Automated count

368

1.58

1.06

3.8

—

24.67

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

197

1.59

1.03

2.4

3.1

—

(40760892) CBC W Ordered Manual Differential panel - Blood

144

1.64

1.02

3.2

4.8

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

0.00

1.00

0.0

1.3

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

0.00

1.00

0.0

1.2

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

1.71

0.93

2.1

3.6

2.50

2.45

mmol/l

0.53

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

557

1.75

0.90

18.3

12.1

85.04

84.02

ml/min/173m2

0.14

440

(3042936) Bacteria identified in Isolate by Culture

1.69

0.86

2.0

—

(3045414) Leukocytes [Presence] in Urine

0.00

0.80

0.0

1.8

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

0.00

0.80

0.0

1.6

—

(3044640) Blood type and Crossmatch panel - Blood

189

1.49

0.79

2.6

2.3

—

(3013512) EKG study

153

1.52

0.79

3.5

3.9

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

247

1.44

0.75

5.6

7.1

1.21

mmol/l

0.01

205

(3006140) Bilirubin.total [Moles/volume] in Serum or Plasma

305

1.43

0.75

5.8

6.1

12.98

10.95

umol/l

0.99

287

(3006315) Basophils [#/volume] in Blood

315

1.43

0.74

3.3

5.2

0.04

e9/l

0.52

276

(40761511) CBC panel - Blood by Automated count

636

0.62

0.73

15.6

11.8

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

1.78

0.72

2.6

2.0

—

(3030467) Casts [#/volume] in Urine by Automated count

147

1.50

0.72

2.0

3.3

0.47

0.19

e6/l

0.52

115

(42870588) Differential panel, method unspecified - Blood

193

1.45

0.71

3.8

4.9

—

(3004248) Sex hormone binding globulin [Moles/volume] in Serum or Plasma

1.84

0.67

1.2

1.9

38.00

38.39

nmol/l

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

400

1.41

0.66

3.2

3.0

—

(3002256) Pathology report gross observation

1.68

0.65

1.2

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

1.83

0.60

1.8

1.9

—

(3000494) Fungus identified in Specimen by Culture

1.60

0.60

1.1

1.4

—

(3005719) IgG [Mass/volume] in Serum or Plasma

1.72

0.58

1.5

2.3

10.51

9.33

g/l

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.72

0.58

3.0

5.6

22.55

25.61

mmol/l

—

(3001604) Monocytes [#/volume] in Blood

315

1.35

0.58

3.4

5.2

0.57

e9/l

0.03

276

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

0.58

0.57

1.3

1.6

—

(40768804) Tissue Pathology biopsy report

239

1.35

0.55

2.4

2.0

—

(3037467) Urinalysis macro (dipstick) panel - Urine

401

1.32

0.48

4.2

3.9

—

(3009542) Hematocrit [Volume Fraction] of Blood

560

1.40

0.45

15.5

13.1

40.96

40.08

0.35

424

(36304419) Bacteria [Presence] in Urine

142

1.36

0.44

2.1

3.0

—

(3001019) Free T4 and TSH panel - Serum or Plasma

1.60

0.43

1.2

2.2

—

(3007844) Epstein Barr virus capsid IgM Ab [Units/volume] in Serum by Immunoassay

0.00

0.41

0.0

1.2

—

(3017044) Thyrotropin receptor Ab [Units/volume] in Serum

0.00

0.41

0.0

2.1

—

5.18

—

(3051387) C reactive protein [Mass/volume] in Capillary blood

0.00

0.41

0.0

3.3

—

26.56

—

(3020427) Coagulation factor X inhibitor [Units/volume] in Platelet poor plasma by Coagulation assay

0.00

0.41

0.0

2.1

—

0.43

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.5

—

(3019145) Choriogonadotropin.beta subunit free [Mass/volume] in Serum or Plasma

0.00

0.41

0.0

1.5

—

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.41

0.0

1.1

—

5.88

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

231

0.76

0.41

4.9

3.5

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

1.41

0.40

1.8

1.4

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

0.00

0.40

0.0

1.3

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

0.00

0.40

0.0

1.3

—

(3004490) Bicarbonate [Moles/volume] standard in Capillary blood

0.00

0.40

0.0

4.9

—

24.90

—

(44816559) Phosphatidylethanol [Mass/volume] in Blood

0.00

0.40

0.0

1.1

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

0.40

0.0

1.3

—

(42529406) Shigella sp [Presence] in Stool by Culture

0.00

0.40

0.0

1.3

—

(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma

0.00

0.39

0.0

2.4

—

(3023421) Hepatitis B virus surface Ab [Units/volume] in Serum

0.00

0.39

0.0

1.3

—

275.71

—

(3007853) Bacteria identified in Skin by Aerobe culture

1.45

0.39

1.9

1.6

—

(3019225) pH of Specimen

1.43

0.36

1.3

5.0

—

(3041096) Erythrocytes [Presence] in Urine by Automated

164

0.75

0.35

3.7

3.0

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

641

1.55

0.35

20.9

14.5

75.27

78.88

umol/l

0.79

641

(4035726)

1.35

0.32

1.4

1.2

—

(3023103) Potassium [Moles/volume] in Serum or Plasma

624

1.38

0.31

19.1

13.9

3.97

mmol/l

0.03

607

(1761868) Lipid panel - Serum or Plasma

223

0.80

0.30

2.9

2.7

—

(21494755) Public health laboratory ask at order entry panel

1.33

0.29

1.1

1.4

—

(3003694) ABO and Rh group [Type] in Blood

161

1.24

0.28

1.1

1.5

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

240

0.82

0.25

4.8

3.2

43.88

45.53

ng/l

0.02

152

(3019060) Gas panel - Arterial blood

1.38

0.24

6.2

3.7

—

(3000764) Benzodiazepines [Presence] in Urine

1.34

0.24

1.0

1.2

—

(3027008) Opiates [Presence] in Urine

1.30

0.23

1.0

1.2

—

(3027944) Amphetamines [Presence] in Urine

1.30

0.23

1.0

1.2

—

(3028300) Cannabinoids [Presence] in Urine

1.30

0.23

1.0

1.2

—

(3003181) Sodium [Moles/volume] in Urine

0.00

0.21

0.0

1.4

—

61.64

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.6

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

0.00

0.21

0.0

1.2

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.3

—

(3038515) Glucose [Moles/volume] in Venous blood

0.00

0.21

0.0

3.8

—

8.10

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.3

—

(3016650) Hepatitis A virus Ab [Presence] in Serum

0.00

0.21

0.0

1.0

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.3

—

(3013327) Hepatitis A virus IgM Ab [Presence] in Serum

0.00

0.21

0.0

1.0

—

(40768800) Prostate Pathology biopsy report

0.00

0.21

0.0

1.3

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.21

0.0

1.2

—

(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.3

—

(3047352) Trisomy 18 risk [Likelihood] in Fetus

0.00

0.21

0.0

1.3

—

(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma

0.00

0.21

0.0

1.2

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.6

—

(4306422)

0.00

0.21

0.0

1.1

—

(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.5

—

(3005033) Fetal Nuchal fold Thickness US

0.00

0.21

0.0

1.3

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.4

—

(4268621)

0.00

0.21

0.0

1.8

—

(3049207) Fetal Trisomy 21 risk [Likelihood] Based on maternal age

0.00

0.20

0.0

1.4

—

(40763531) Fetal Nuchal fold [Multiple of the median] Thickness adjusted for maternal weight

0.00

0.20

0.0

1.4

—

(3008714) Choriogonadotropin [Multiple of the median] adjusted in Serum or Plasma

0.00

0.20

0.0

1.4

—

(3014051) Protein [Presence] in Urine by Test strip

0.00

0.20

0.0

1.9

—

(3044355) Beta 2 glycoprotein 1 IgG Ab [Units/volume] in Serum or Plasma by Immunoassay

0.00

0.20

0.0

1.2

—

1.20

—

(3043238) Trisomy 21 risk [Likelihood] in Fetus

0.00

0.20

0.0

1.4

—

(3039162) Centromere protein B Ab [Units/volume] in Serum

0.00

0.20

0.0

1.2

—

(46235831) Pregnancy associated plasma protein A [Multiple of the median] adjusted in Serum or Plasma

0.00

0.20

0.0

1.4

—

(3023511) Choriogonadotropin [Units/volume] in Urine

0.00

0.20

0.0

1.4

—

(3013603) Prostate specific Ag [Mass/volume] in Serum or Plasma

235

0.85

0.19

4.2

4.7

1.67

1.98

ug/l

0.54

207

(40758558) Short blood count panel - Blood

151

0.83

0.18

7.5

6.9

—

(3018418) pH of Serum or Plasma

140

1.18

0.17

4.4

4.1

7.40

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

0.78

0.16

1.0

6.6

1.08

1.10

mmol/l

—

(3044889) 12 lead EKG panel

403

0.88

0.16

3.3

3.7

—

(3020682) Albumin/Creatinine [Ratio] in Urine

170

1.16

0.15

2.5

4.0

2.06

13.16

mg/mmol

2.33

106

(3012516) Albumin [Mass/volume] in Urine

162

1.15

0.13

2.4

3.1

20.45

91.62

mg/l

1.96

108

(3036481) Cortisol [Moles/volume] in Serum or Plasma

1.04

0.08

1.3

1.9

284.17

415.00

nmol/l

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.03

0.07

1.6

1.7

—

(3022948) Iron [Moles/volume] in Serum or Plasma

0.86

0.07

2.4

2.3

15.38

13.46

umol/l

—

(3021589) Normoblasts [#/volume] in Blood

277

1.08

0.06

7.8

8.7

0.00

e9/l

0.48

220

(46235355) HIV 1 and 2 tests - Meaningful Use set

111

1.10

0.04

1.3

2.0

—

(3026782) Osmolality of Urine

111

1.10

0.04

1.8

2.8

663.25

600.46

mosm/kgh2o

0.32

(3011397) Hemoglobin [Presence] in Urine by Test strip

138

0.93

0.03

4.3

3.3

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

196

0.96

0.00

4.5

4.1

19.84

21.14

—

(3032080) INR in Blood by Coagulation assay

219

1.01

0.00

22.0

6.2

1.34

1.18

inr

0.36

(3023368) Bacteria identified in Blood by Culture

134

0.96

0.00

4.6

4.3

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

0.92

0.00

2.3

1.4

—

(3004789) Transferrin [Mass/volume] in Serum or Plasma

0.92

0.00

2.3

2.05

2.37

g/l

—

(3010566) Parathyrin.intact [Moles/volume] in Serum or Plasma

0.00

0.0

4.4

—

(3011412) CD3 cells [#/volume] in Blood

0.00

0.0

1.2

—

(3027953) Aldolase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

1.6

—

4.42

—

(3012095) Magnesium [Moles/volume] in Serum or Plasma

1.03

0.00

3.0

3.1

0.80

0.81

mmol/l

—

(3004915) Chlamydophila pneumoniae IgA Ab [Units/volume] in Serum

0.00

0.0

1.1

—

(3000081) cloZAPine [Moles/volume] in Serum or Plasma

0.00

0.0

25.0

—

1491.33

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(44790049)

0.00

0.0

1.6

—

(3008832) Norclozapine [Moles/volume] in Serum or Plasma

0.00

0.0

10.5

—

955.00

—

(3019897) Erythrocyte distribution width [Ratio] by Automated count

0.00

0.0

1.6

—

13.40

—

(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum

0.00

0.0

1.1

—

(44790048)

0.00

0.0

1.6

—

(40771527) Human papilloma virus E6+E7 mRNA [Presence] in Cervix by NAA with probe detection

0.00

0.0

1.6

—

(3009340) Metanephrine [Moles/volume] in Serum or Plasma

0.00

0.0

1.1

—

(4198724)

0.00

0.0

1.1

—

(1617658) Protocol used for examination of sentinel lymph nodes

0.00

0.0

1.0

—

(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.1

—

(3032773) Endomysium IgG Ab [Titer] in Serum

0.00

0.0

1.0

—

(3022145) Colonoscopy Study observation

0.86

0.00

1.5

1.3

—

(3024666) Lithium, Blood [Moles/volume] in Serum or Plasma

0.00

0.0

4.5

—

0.57

—

(40768795) Lymph node Pathology biopsy report

0.00

0.0

1.0

—

(44790047)

0.00

0.0

1.6

—

(3021197) Magnesium Ionized [Moles/volume] in Serum or Plasma

0.00

0.0

1.4

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

0.91

0.00

1.5

1.9

—

(3012544) pH of Venous blood

0.89

0.00

2.2

3.6

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(40765089) Chromosome analysis panel - Blood by G-banded

0.00

0.0

1.0

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

0.0

1.0

—

(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.2

—

(3051651) Icteric interference index of Serum or Plasma

0.00

0.0

2.7

—

(4211845)

0.00

0.0

1.4

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.0

1.0

—

(3034603) RHD gene allele [Genotype] in Blood or Tissue by Molecular genetics method Nominal

0.00

0.0

1.4

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

0.00

0.0

1.0

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

0.0

3.5

—

(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH

0.00

0.0

1.2

—

(3035285) Chloride [Moles/volume] in Venous blood

0.00

0.0

3.5

—

105.00

—

(3014702) Chromogranin A [Moles/volume] in Serum or Plasma

0.00

0.0

2.6

—

1.61

—

(44806118)

0.00

0.0

1.6

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3008757) Leukocyte morphology finding [Identifier] in Blood

0.00

0.0

2.5

—

(3032699) Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.3

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3000991) Gas panel - Venous blood

1.00

0.00

5.0

7.6

—

(3000492) Spirometry study

0.85

0.00

1.8

1.5

—

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.3

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

0.00

0.0

1.0

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.4

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

0.84

0.00

1.4

1.8

—

(3005570) Glucose [Moles/volume] in Urine

0.00

0.0

1.6

—

(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count

0.00

0.0

2.0

—

(3018559) Microscopic observation [Identifier] in Buccal smear by Cyto stain

0.00

0.0

1.1

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

0.0

1.2

—

(3043453) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum

0.00

0.0

1.0

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

0.84

0.00

2.6

1.6

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.0

—

(3045424) Erythrocytes [Presence] in Urine

0.00

0.0

1.3

—

(3011391) Calcitriol [Moles/volume] in Serum or Plasma

0.00

0.0

1.0

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3002148) Methylenedioxymethamphetamine [Presence] in Urine by Screen method

0.00

0.0

1.2

—

(40760888) Immunoglobulin light chains.free panel - Serum

0.00

0.0

6.8

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.0

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3037556) Urate [Mass/volume] in Serum or Plasma

0.00

0.0

1.0

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3041354) Potassium [Moles/volume] in Venous blood

0.00

0.0

3.5

—

4.01

—

(3051611) Lipemic interference index of Serum or Plasma

0.00

0.0

3.2

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3042631) Mycobacterium sp identified in Specimen

0.00

0.0

1.7

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: Z21_UPPER_ARM – Upper arm

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Upper arm

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Upper arm (Z21_UPPER_ARM)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints