This is a non-core endpoint: only basic statistics are computed.
Benign neoplasm: Vertebral column
CD2_BENIGN_VERTEB_COLUMN_EXALLC
No definition available.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
|
1. Apply sex-specific ruleNone |
- |
2. Check conditionsNone |
|
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpointsNone |
- |
6. Filter based on genotype QC (FinnGen only)None |
- |
Control definitions (FinnGen only)
- Control exclude
- C3_CANCER, C3_CANCER_WIDE
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D16
- Name in latin
- Neoplasma benignum columnae vertebralis
Similar endpoints
↥List of similar endpoints to
Benign neoplasm: Vertebral column
based on the number of shared cases.
Similar with more cases:
- Benign neoplasm: Vertebral column
- Benign neoplasm of bone and articular cartilage
- Benign neoplasm of bone and articular cartilage
- Benign neoplasms
- Benign neoplasms
Similar with less cases:
Case counts by codes
↥FinnGen case counts by registry codes:
No upset plot: script not run.
No upset table: script not run.
Summary Statistics
↥-FinRegistry-
This endpoint is excluded from FinRegistry analyses (omitted endpoint).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 88 | 46 | 42 |
| Unadjusted period prevalence (%) | 0.02 | 0.02 | 0.02 |
| Median age at first event (years) | 52.69 | 49.76 | 55.89 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 75
- Matched controls
- 750
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
D16.6
ICD-10 Finland
Benign neoplasm: Vertebral column
+∞
71.8
57
*
21301
ICD-8 Finland
Benign neoplasm of bone and cartilage, Columnae vertebralis (sacro et coccyge exclusis)
+∞
14.0
13
*
H02AB02
ATC
dexamethasone; systemic
75.9
6.5
7
*
NK6CT
NOMESCO Finland
Bone biopsy with CT guidance
+∞
6.3
6
*
2132A
ICD-9 Finland
Benign neoplasm of bone and articular cartilage, Vertebral column, excluding sacrum and coccyx
+∞
6.3
6
*
JN4BD
NOMESCO Finland
Extensive body CT
8.0
6.0
13
19
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
48
304
2.27
3.50
6.6
4.8
0.0
0.0
estimate
—
8
48
46
288
2.25
3.43
5.8
8.2
1.2
1.2
mmol/l
0.76
40
248
47
305
2.16
3.12
5.6
3.3
0.0
0.0
estimate
—
9
48
14
53
2.95
2.96
2.6
1.7
60.0
64.9
ml/min/173m2
—
5
19
17
72
2.69
2.94
1.5
1.5
—
—
—
0
0
47
313
2.08
2.84
5.5
3.3
0.0
0.0
estimate
—
9
46
17
74
2.61
2.79
1.5
1.4
—
—
—
0
0
17
75
2.57
2.72
6.6
7.8
—
—
—
0
0
28
156
2.17
2.67
7.1
3.4
0.0
0.0
estimate
—
9
47
5
8
6.54
2.40
1.4
1.0
—
—
—
0
0
36
235
1.90
2.17
6.4
3.5
—
—
—
0
0
23
131
2.02
2.03
4.7
2.3
0.8
0.8
ug/l
0.13
18
92
5
11
4.75
1.97
1.4
1.1
—
—
—
0
0
32
209
1.83
1.88
3.6
2.9
—
—
—
0
0
5
12
4.35
1.85
1.4
1.4
—
—
—
0
0
27
168
1.88
1.84
2.7
2.7
0.2
0.3
e6/l
0.37
22
112
27
178
1.75
1.50
6.1
3.6
22.4
24.1
%
0.18
14
86
9
39
2.45
1.48
2.2
1.6
—
—
—
0
0
19
115
1.83
1.39
2.5
2.4
2.3
0.9
e6/l
0.41
12
57
47
366
1.61
1.37
10.5
6.1
4.5
4.2
e9/l
0.30
42
310
8
34
2.48
1.33
5.9
13.0
1.1
1.7
%
—
8
34
17
101
1.85
1.31
1.6
1.6
—
—
—
0
0
8
39
2.15
1.19
2.0
1.5
—
—
—
0
0
35
269
1.50
1.01
2.0
2.0
99.8
98.2
pmol/l
0.08
22
136
0
28
0.00
0.99
0.0
1.4
—
—
—
0
0
36
279
1.49
0.99
5.4
4.0
—
—
—
0
0
6
32
1.94
0.83
6.8
8.8
27.3
25.5
mmol/l
—
6
32
20
143
1.52
0.79
1.3
1.3
1.0
1.3
u/ml
—
5
43
0
27
0.00
0.79
0.0
1.6
—
—
—
0
0
6
34
1.82
0.78
5.2
2.5
1.0
1.4
%
—
6
34
5
23
2.24
0.77
1.4
1.6
—
—
—
0
0
10
62
1.69
0.68
1.8
1.7
365.7
426.5
nmol/l
—
10
54
77
719
1.57
0.65
5.2
5.0
2.8
2.7
mmol/l
0.12
71
675
13
90
1.52
0.59
8.8
2.9
0.8
0.8
mmol/l
0.38
13
82
75
701
1.47
0.57
4.3
4.5
1.5
1.5
mmol/l
0.07
69
655
35
298
1.29
0.50
4.5
2.6
120.9
110.3
ug/l
0.12
35
271
26
214
1.31
0.47
2.3
2.0
208.2
158.8
u/l
0.25
26
201
75
709
1.39
0.45
16.3
11.2
19.1
22.1
mg/l
0.43
62
540
57
522
1.26
0.42
8.4
5.1
71.1
75.3
u/l
0.39
52
470
14
107
1.37
0.40
2.6
2.5
0.8
2.7
e6/l
—
7
50
6
90
0.64
0.34
1.3
2.3
1.1
1.5
%
—
6
79
69
653
1.26
0.34
13.0
10.5
84.1
81.1
ml/min/173m2
0.47
59
517
74
706
1.30
0.33
5.0
4.5
4.6
4.6
mmol/l
0.09
69
665
13
102
1.32
0.32
1.6
1.4
—
—
—
0
0
71
676
1.26
0.31
4.4
4.1
1.1
1.3
mmol/l
1.82
66
628
8
66
1.23
0.27
2.6
2.1
3.4
6.1
ug/l
—
8
57
72
691
1.23
0.25
4.4
4.3
5.7
6.0
mmol/l
1.00
67
638
49
457
1.16
0.24
2.8
3.1
—
—
—
0
0
5
42
1.20
0.22
1.0
1.0
—
—
—
0
0
0
11
0.00
0.21
0.0
1.3
—
—
—
0
0
0
11
0.00
0.21
0.0
1.3
—
—
—
0
0
0
10
0.00
0.21
0.0
1.0
—
—
—
0
0
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
0
13
0.00
0.21
0.0
1.2
—
4.5
—
0
6
16
137
1.21
0.20
3.9
2.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.2
—
—
—
0
0
0
14
0.00
0.20
0.0
1.2
—
—
—
0
0
7
58
1.22
0.19
3.9
3.1
—
—
—
0
0
17
148
1.18
0.18
3.1
1.7
8.5
0.9
mg/l
0.60
11
113
18
161
1.15
0.14
3.3
1.9
2.8
2.8
mg/l
0.02
18
139
31
291
1.10
0.11
4.2
3.5
47.5
51.8
ng/l
0.06
21
193
11
97
1.15
0.09
2.6
2.8
13.3
13.4
umol/l
0.02
11
88
7
81
0.85
0.07
1.7
2.0
—
—
—
0
0
13
128
1.02
0.00
1.5
1.5
—
—
—
0
0
7
71
0.98
0.00
1.4
1.8
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
9
0.00
0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
0.00
0.0
2.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded from FinRegistry analyses (omitted endpoint).
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_VERTEB_COLUMN_EXALLC – Benign neoplasm: Vertebral column
GWS hits: -
This endpoint is excluded from FinRegistry analyses (omitted endpoint).