This is a non-core endpoint: only basic statistics are computed.
See these related core endpoints for full statistics:
Congenital malformations of lung
Q17_CONGEN_MALFO_LUNG_WIDE
No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
106 |
4. Check minimum number of eventsNone |
106 |
5. Include endpointsNone |
106 |
6. Filter based on genotype QC (FinnGen only) |
98 |
Control definitions (FinnGen only)
- Control exclude
- Q17_CONGEN_MALFO_RESPI_SYSTEM
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
- Parent code in ICD-10
- Q3[0-4]
- Name in latin
- Malformationes congenitae pulmonis/pulmonum
Similar endpoints
↥List of similar endpoints to
Congenital malformations of lung
based on the number of shared cases.
Similar with more cases:
- Congenital malformations of the respiratory system
- Congenital malformations, deformations and chromosomal abnormalities
- Any operation in hilmo
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 98 | 54 | 44 |
| Unadjusted period prevalence (%) | 0.02 | 0.02 | 0.02 |
| Median age at first event (years) | 44.38 | 47.95 | 40.01 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 106
- Matched controls
- 1060
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
R91
ICD-10 Finland
Abnormal findings on diagnostic imaging of lung
15.3
35.4
37
36
Q33.2
ICD-10 Finland
Sequestration of lung
+∞
29.6
27
*
Q33.08
ICD-10 Finland
Congenital cystic lung
+∞
23.8
22
*
Q33.4
ICD-10 Finland
Congenital bronchiectasis
+∞
14.9
14
*
J18.9
ICD-10 Finland
Pneumonia, unspecified
4.9
13.1
39
113
J47
ICD-10 Finland
Bronchiectasis
28.5
12.9
17
7
Q33.6
ICD-10 Finland
Hypoplasia and dysplasia of lung
+∞
12.8
12
*
GD1AA
NOMESCO Finland
Thorax X-ray examination
4.2
12.0
63
275
UGC12
NOMESCO Finland
Flexible bronchoscopy
10.4
11.2
22
26
J15.9
ICD-10 Finland
Bacterial pneumonia, unspecified
6.1
10.3
20
39
Q33.9
ICD-10 Finland
Congenital malformation of lung, unspecified
+∞
9.5
9
*
Q33.00
ICD-10 Finland
Solitary congenital cyst in the lungs
+∞
9.5
9
*
GD1UA
NOMESCO Finland
Thorax X-ray examination outside radiological department
4.5
9.4
28
79
GDC00
NOMESCO Finland
Lobectomy of lung
+∞
8.4
8
*
XG412
NOMESCO Finland
Flow-volume spirometry with bronchospasmolysis
7.2
8.4
20
33
GD1BD
NOMESCO Finland
Thorax extensive CT-examination
7.8
8.0
18
27
Q34.1
ICD-10 Finland
Congenital cyst of mediastinum
+∞
7.4
7
*
Q33.80
ICD-10 Finland
Congenital [cystic] adenomatoid malformation of lung
+∞
7.4
7
*
R03AC02
ATC
salbutamol; inhalant
3.2
7.1
75
456
GD1AD
NOMESCO Finland
Thorax CT examination
9.1
6.6
13
16
UGC02
NOMESCO Finland
Rigid bronchoscopy
28.5
6.3
8
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
21
68
3.60
5.71
1.8
1.2
93.67
125.42
u/ml
0.36
21
62
11
18
6.68
4.74
3.6
1.8
—
—
—
0
0
101
852
4.93
4.49
13.2
14.0
139.81
139.69
mmol/l
0.25
101
839
12
25
5.27
4.34
1.1
1.6
—
—
—
0
0
11
23
5.21
4.00
1.1
1.7
—
—
—
0
0
100
860
3.87
3.59
13.4
13.8
4.00
3.97
mmol/l
0.59
100
844
8
13
6.55
3.57
1.0
1.4
—
—
—
0
0
6
6
10.49
3.54
1.2
1.2
—
—
—
0
0
8
15
5.67
3.26
1.1
2.1
—
—
—
0
0
8
15
5.67
3.26
1.1
2.1
—
—
—
0
0
7
11
6.72
3.24
1.1
1.5
—
—
—
0
0
6
8
7.86
3.09
1.2
1.4
—
—
—
0
0
44
275
2.03
3.04
7.1
9.1
1.00
1.17
inr
2.81
16
81
20
90
2.51
3.03
2.0
1.9
—
—
—
0
0
45
285
2.01
2.98
3.9
3.1
—
—
—
0
0
57
396
1.95
2.86
3.4
3.4
0.00
0.00
estimate
—
10
66
7
14
5.27
2.77
1.0
1.9
—
—
—
0
0
7
14
5.27
2.77
1.0
1.9
—
—
—
0
0
55
387
1.88
2.58
6.1
9.5
1.22
1.22
mmol/l
0.15
47
346
6
11
5.71
2.58
1.2
1.9
—
—
—
0
0
5
7
7.42
2.57
4.0
3.4
—
—
—
0
0
11
38
3.11
2.50
1.3
1.3
—
—
—
0
0
55
390
1.85
2.49
3.4
3.4
0.00
0.00
estimate
—
8
71
55
392
1.84
2.43
5.5
4.7
0.00
0.00
estimate
—
10
70
5
8
6.49
2.40
1.2
1.4
—
—
—
0
0
6
13
4.82
2.30
1.7
1.3
—
—
—
0
0
22
118
2.09
2.22
2.2
1.9
—
—
—
0
0
18
89
2.23
2.22
2.1
1.8
—
—
—
0
0
7
19
3.87
2.19
1.1
1.6
—
—
—
0
0
6
14
4.47
2.18
1.2
1.7
—
—
—
0
0
8
25
3.37
2.14
1.5
1.4
—
—
—
0
0
20
105
2.12
2.13
8.0
14.1
25.85
24.83
mmol/l
0.73
20
105
6
16
3.91
1.96
1.0
1.6
—
—
—
0
0
106
1007
+∞
1.93
19.8
17.7
39.26
40.62
%
0.82
96
964
31
198
1.80
1.88
2.6
3.5
0.00
0.00
estimate
—
9
69
36
241
1.75
1.87
2.1
2.8
10.79
39.06
ng/l
1.80
19
140
6
17
3.67
1.86
1.5
1.2
—
—
—
0
0
23
135
1.90
1.81
1.6
3.6
4.58
1.76
e6/l
0.64
13
70
75
617
1.74
1.79
4.1
3.9
9.59
10.02
mm/h
0.12
69
581
24
146
1.83
1.69
1.5
3.0
0.95
0.86
e6/l
0.06
14
80
34
235
1.66
1.54
3.1
3.3
0.16
0.36
e6/l
0.79
28
173
91
806
1.91
1.52
3.7
3.8
4.75
4.74
mmol/l
0.02
84
768
27
176
1.72
1.51
2.3
2.5
2.18
1.08
mg/l
0.29
17
138
5
16
3.23
1.45
1.4
3.0
—
—
—
0
0
5
16
3.23
1.45
1.0
1.1
—
—
—
0
0
28
189
1.65
1.38
2.2
2.4
—
—
—
0
0
87
771
1.72
1.31
3.3
3.5
1.26
1.27
mmol/l
0.06
80
725
13
70
1.98
1.30
2.5
3.1
—
—
—
0
0
50
394
1.51
1.26
4.3
7.9
19.67
13.80
umol/l
0.45
45
377
5
19
2.71
1.23
1.6
1.6
—
—
—
0
0
5
19
2.71
1.23
1.6
1.6
—
—
—
0
0
90
811
1.73
1.19
3.8
4.1
2.89
2.86
mmol/l
0.11
82
766
48
379
1.49
1.18
2.5
2.5
—
—
—
0
0
15
90
1.78
1.11
2.1
7.3
23.27
23.50
mmol/l
0.12
15
90
13
75
1.84
1.08
2.7
7.1
—
—
—
0
0
7
35
2.07
1.02
1.0
1.3
—
—
—
0
0
88
798
1.61
1.01
3.6
3.8
1.44
1.47
mmol/l
0.29
82
752
36
283
1.41
0.86
3.1
3.5
—
—
—
0
0
80
722
1.44
0.83
9.7
10.9
90.10
89.36
ml/min/173m2
0.12
66
586
74
661
1.40
0.80
4.3
3.8
14.51
14.64
pmol/l
0.19
66
624
0
25
0.00
0.80
0.0
2.2
—
—
—
0
0
7
38
1.90
0.75
1.0
1.2
—
—
—
0
0
7
41
1.76
0.71
7.4
19.3
0.71
0.70
%
—
7
41
7
42
1.71
0.70
7.4
18.9
1.00
1.68
%
—
7
42
5
29
1.76
0.64
1.2
1.3
0.22
0.23
g/l
—
5
29
5
29
1.76
0.64
1.2
1.3
1.01
1.13
g/l
—
5
29
8
49
1.68
0.64
1.4
1.8
—
—
—
0
0
39
325
1.32
0.63
4.2
5.1
38.44
36.32
g/l
1.59
34
312
0
20
0.00
0.61
0.0
2.4
—
0.00
—
0
20
61
542
1.30
0.61
8.4
10.1
3.96
3.86
e9/l
0.14
56
465
10
147
0.65
0.58
1.8
1.4
—
—
—
0
0
6
39
1.57
0.54
2.5
8.2
0.92
1.75
%
—
6
39
29
237
1.31
0.53
1.7
1.8
—
—
—
0
0
19
147
1.36
0.49
3.7
3.8
63.62
352.33
ng/l
1.37
13
101
76
706
1.27
0.47
3.6
3.8
—
—
—
0
0
5
31
1.64
0.43
1.8
1.5
—
0.01
—
0
6
5
32
1.59
0.43
1.4
7.0
40.56
54.08
%
—
5
32
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
16
0.00
0.41
0.0
1.4
—
—
—
0
0
0
18
0.00
0.40
0.0
1.7
—
—
—
0
0
0
19
0.00
0.39
0.0
2.5
—
0.00
—
0
19
0
19
0.00
0.39
0.0
2.5
—
0.00
—
0
19
7
98
0.69
0.32
2.4
1.7
—
—
—
0
0
11
86
1.31
0.27
4.4
9.5
107.18
104.20
mmol/l
1.07
11
86
79
757
1.17
0.24
4.1
3.7
5.58
5.74
mmol/l
1.03
73
709
10
125
0.78
0.24
3.6
2.1
—
—
—
0
0
5
38
1.33
0.23
9.0
5.4
3.56
3.54
g/l
—
5
38
0
10
0.00
0.21
0.0
1.3
—
—
—
0
0
0
10
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.2
—
104.13
—
0
12
0
12
0.00
0.21
0.0
2.4
—
—
—
0
0
9
113
0.78
0.21
2.7
2.1
2.61
2.51
g/l
—
9
107
0
14
0.00
0.20
0.0
1.3
—
—
—
0
0
20
176
1.17
0.19
3.9
4.0
1.54
1.67
ug/l
0.16
20
154
7
57
1.24
0.19
3.1
1.8
—
—
—
0
0
17
149
1.17
0.17
1.0
1.3
1.26
3.35
u/ml
—
5
60
17
150
1.16
0.15
1.0
1.3
16.93
29.35
iu/ml
—
6
46
69
712
0.91
0.13
4.3
4.6
38.22
38.85
mmol/mol
0.30
64
677
15
133
1.15
0.13
4.5
3.9
18.10
23.03
%
—
10
51
10
116
0.85
0.12
3.4
2.0
—
—
—
0
0
5
44
1.14
0.10
2.8
1.7
—
—
—
0
0
7
68
1.03
0.08
3.7
1.9
—
—
—
0
0
25
265
0.93
0.08
2.0
1.8
82.65
101.29
pmol/l
1.07
11
128
7
83
0.83
0.07
1.4
3.3
26.71
28.31
u/l
—
7
65
60
613
0.95
0.05
2.3
3.0
31.69
41.89
u/l
1.70
54
592
10
108
0.92
0.03
1.8
1.9
1.24
1.38
%
—
10
103
12
123
0.97
0.00
2.4
2.1
12.03
14.27
umol/l
0.61
12
117
0
8
0.00
0.00
0.0
1.8
—
—
—
0
0
0
8
0.00
0.00
0.0
1.8
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.8
—
—
—
0
0
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.8
—
—
—
0
0
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
0
7
0.00
0.00
0.0
2.4
—
139.43
—
0
7
0
5
0.00
-0.00
0.0
4.8
—
—
—
0
0
5
54
0.92
-0.00
1.0
1.4
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.2
—
1.25
—
0
5
0
6
0.00
-0.00
0.0
7.3
—
—
—
0
0
5
53
0.94
-0.00
3.6
2.2
1.54
5.13
ug/l
—
5
46
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
7.4
—
33.20
—
0
5
0
9
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
4.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_CONGEN_MALFO_LUNG_WIDE – Congenital malformations of lung
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).