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This is a non-core endpoint: only basic statistics are computed.

Failure of sterile precautions during surgical operation

Endpoint Browser

VWXY20_STERI_VAROT_PETTA_KIRURGISEN_TAI_MUUN_LAAKETIETEELLISEN_HOIDON_AIKANA

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — Y62
  • Cause of death: ICD-10 — Y62

2 out of 7 registries used, show all original rules.

96

4. Check minimum number of events

None

96

5. Include endpoints

None

96

6. Filter based on genotype QC (FinnGen only)

96

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
4
First used in FinnGen datafreeze
DF9
Parent code in ICD-10
Y6

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

All Female Male
Number of individuals 96 51 45
Unadjusted period prevalence (%) 0.02 0.02 0.02
Median age at first event (years) 64.31 60.43 68.70

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
83
Matched controls
828
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Y62.0
ICD-10 Finland
Failure of sterile precautions during surgical and medical care during surgical operation
+∞
59.8
50
*
T81.4
ICD-10 Finland
Infection following a procedure, not elsewhere classified
73.8
55.1
67
44
Y62.9
ICD-10 Finland
Failure of sterile precautions during surgical and medical care during unspecified surgical and medical care
+∞
18.4
17
*
GD1QA
NOMESCO Finland
Supine thorax X-ray examination
9.2
15.0
35
61
Y83.9
ICD-10 Finland
Surgical procedure, unspecified as the cause of abnormal reaction of the patient, or of later complication, without mention of misadventure at the time of the procedure
18.0
10.0
15
10
SPAT1148
SPAT
Treatment of chronic ulcer or burn
6.3
9.8
28
62
WX408
NOMESCO Finland
General anesthesy, balanced
4.5
9.2
42
154
GD1AA
NOMESCO Finland
Thorax X-ray examination
4.4
9.1
58
286
T84.5
ICD-10 Finland
Infection and inflammatory reaction due to internal joint prosthesis
99.8
8.6
9
*
J04AB02
ATC
rifampicin; systemic
99.8
8.6
9
*
QDB05
NOMESCO Finland
Revision of wound of skin of lower limb
20.8
7.8
11
6
SPAT1255
SPAT
Intravenous administration of medicine
7.9
7.6
17
26
WX882
NOMESCO Finland
High dependency care
17.8
7.5
11
7
L28
ICPC
Limited function/disability (L)
4.9
7.3
25
67
GD1UA
NOMESCO Finland
Thorax X-ray examination outside radiological department
4.8
7.1
25
68
Y83
ICD-10 Finland
Surgical operation and other surgical procedures as the cause of abnormal reaction of the patient, or of later complication, without mention of misadventure at the time of the procedure
6.5
7.0
18
34
WX320
NOMESCO Finland
Spinalanesthesy
4.0
7.0
32
113
NF3AA
NOMESCO Finland
Femur X-ray examination
18.7
6.9
10
6
AA1AD
NOMESCO Finland
CT of head and brain
3.9
6.9
32
114
SPAT1144
SPAT
Treatment of reopened or infected surgical wound
6.6
6.8
17
31
J01DB01
ATC
cefalexin; oral
6.7
6.6
78
580
TPH04
NOMESCO Finland
Cathetrisation of vein
3.8
6.5
31
112
B01AB05
ATC
enoxaparin; parenteral
3.5
6.5
39
169
J01FF01
ATC
clindamycin; systemic
3.6
6.5
34
133
J01MA12
ATC
levofloxacin; systemic
3.8
6.5
31
113
TQW11
NOMESCO Finland
Vacuum treatment of wound
19.9
6.4
9
5
C03CA01
ATC
furosemide; systemic
3.5
6.2
35
142
Y83.8
ICD-10 Finland
Other surgical procedures as the cause of abnormal reaction of the patient, or of later complication, without mention of misadventure at the time of the procedure
11.3
6.2
11
11
SPAT1211
SPAT
Application of soft bandage
5.8
6.2
17
35

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
60
119
11.78
34.22
4.4
1.9
—
—
—
0
0
67
213
8.10
22.61
7.4
4.5
—
—
—
0
0
41
94
6.87
18.84
3.1
1.4
—
—
—
0
0
63
262
5.09
13.67
4.3
2.2
—
—
—
0
0
69
329
4.90
12.03
11.2
8.7
1.6
1.3
inr
—
7
95
18
27
7.97
11.92
4.8
2.8
—
—
—
0
0
33
100
4.50
10.34
5.1
6.1
1.1
1.0
mmol/l
0.20
33
94
31
101
4.06
8.67
7.8
8.3
1.9
1.3
mmol/l
0.29
24
80
19
44
5.14
8.11
4.8
2.6
—
7.4
—
0
7
59
307
3.39
7.86
6.2
3.9
55.9
38.1
ng/l
0.48
54
216
23
70
4.01
6.95
5.3
4.4
—
—
—
0
0
81
540
4.20
6.77
6.3
4.2
—
—
—
0
0
66
389
3.23
6.74
9.2
6.0
0.0
0.0
e9/l
0.11
59
333
66
399
3.09
6.26
9.7
6.1
1.7
1.8
e9/l
0.33
56
352
18
51
4.11
5.94
10.1
8.0
—
—
—
0
0
64
389
2.94
5.86
9.3
5.9
0.7
0.6
e9/l
0.77
58
334
9
7
14.00
5.70
2.6
2.3
—
—
—
0
0
65
402
2.91
5.69
9.4
6.4
0.2
0.2
e9/l
1.00
58
353
60
356
2.83
5.69
8.6
6.4
1.2
1.2
mmol/l
1.42
55
324
61
369
2.79
5.51
10.4
5.9
58.9
59.1
%
0.05
54
346
20
66
3.56
5.32
4.3
4.5
3.1
2.1
mmol/l
0.40
14
50
19
61
3.64
5.25
1.8
4.2
58.3
72.3
e9/l
1.73
12
49
60
366
2.70
5.23
10.0
6.1
3.1
2.7
%
0.74
53
340
60
368
2.68
5.15
10.4
6.5
8.6
8.4
%
0.17
54
345
30
130
2.90
5.10
2.7
2.9
0.8
0.8
mmol/l
0.11
30
123
15
42
4.05
4.99
2.8
4.1
123.9
126.5
g/l
0.20
15
42
8
7
12.31
4.88
3.1
1.9
—
—
—
0
0
26
107
2.96
4.82
2.2
1.4
—
—
—
0
0
47
266
2.50
4.63
9.9
5.6
—
—
—
0
0
18
61
3.40
4.57
4.4
4.9
—
—
—
0
0
19
67
3.29
4.54
4.5
4.5
—
—
—
0
0
57
355
2.49
4.53
10.1
6.1
0.7
0.6
%
0.46
51
326
10
22
4.96
4.41
1.2
3.1
37.0
33.6
mg/l
—
10
16
10
22
4.96
4.41
1.2
3.1
56.6
363.9
mg/l
—
10
16
59
380
2.43
4.27
10.8
6.1
24.9
26.4
%
0.48
52
352
40
222
2.37
3.99
7.2
3.8
—
—
—
0
0
51
315
2.32
3.97
2.5
2.0
98.1
91.4
pmol/l
0.39
27
159
14
45
3.47
3.83
11.4
11.4
24.8
25.1
mmol/l
0.19
14
40
25
116
2.56
3.63
3.0
2.4
20.2
22.5
%
0.40
19
100
15
53
3.17
3.54
1.2
1.2
—
—
—
0
0
31
161
2.37
3.53
1.7
1.8
1.2
1.1
mg/l
0.06
24
136
16
64
2.80
3.06
12.8
10.0
—
—
—
0
0
28
149
2.24
2.97
4.9
3.1
50.9
171.0
ng/l
1.07
21
119
7
15
4.94
2.65
1.3
3.8
—
—
—
0
0
18
84
2.41
2.54
2.2
3.3
12.3
12.9
umol/l
0.03
13
73
14
58
2.66
2.50
1.7
2.3
—
—
—
0
0
13
54
2.63
2.31
3.7
2.3
237.1
200.9
ng/l
0.14
13
48
27
160
1.96
2.11
6.5
4.2
1.0
1.0
kg/l
—
7
17
13
57
2.48
2.08
4.6
3.8
—
—
—
0
0
35
229
1.83
2.02
3.8
3.1
115.4
55.2
mg/l
0.44
26
150
42
292
1.78
1.98
5.7
3.5
—
—
—
0
0
85
736
2.35
1.95
5.4
4.5
1.9
1.9
mu/l
0.07
79
665
33
215
1.82
1.92
1.4
1.4
—
—
—
0
0
36
244
1.76
1.83
4.1
3.8
26.4
8.3
mg/mmol
0.60
27
153
6
18
3.48
1.77
2.2
2.6
—
—
—
0
0
6
18
3.48
1.77
1.3
1.4
—
—
—
0
0
85
748
2.19
1.67
7.8
5.8
42.3
40.2
mmol/mol
0.85
79
696
5
14
3.71
1.63
2.6
4.1
11.8
8.0
mmol/l
—
5
14
5
14
3.71
1.63
2.6
4.5
1.8
1.5
mmol/l
—
5
14
7
26
2.82
1.61
1.3
1.2
—
—
—
0
0
6
20
3.13
1.61
1.3
1.4
—
—
—
0
0
35
243
1.69
1.60
5.5
2.7
—
—
—
0
0
17
94
1.98
1.60
1.2
1.2
—
—
—
0
0
5
15
3.46
1.54
2.4
2.2
58.8
65.1
%
—
5
15
6
21
2.98
1.53
1.3
1.4
—
—
—
0
0
6
21
2.98
1.53
1.3
1.4
—
—
—
0
0
27
177
1.73
1.51
1.3
1.3
3.3
0.8
u/ml
—
6
56
9
38
2.51
1.50
2.4
2.8
1.6
1.1
%
—
9
38
5
16
3.24
1.45
1.2
1.3
—
—
—
0
0
30
206
1.66
1.41
9.6
7.1
—
—
—
0
0
18
279
0.56
1.37
3.3
2.8
—
—
—
0
0
87
793
2.03
1.35
5.2
4.5
4.5
4.6
mmol/l
0.53
81
732
42
318
1.57
1.32
2.3
2.1
—
—
—
0
0
86
776
2.04
1.31
6.1
4.5
6.1
6.0
mmol/l
0.51
80
713
5
18
2.87
1.30
1.0
1.4
—
—
—
0
0
17
103
1.79
1.23
1.2
1.3
—
—
—
0
0
24
161
1.65
1.22
1.4
1.4
3.0
2.4
g/l
0.86
12
103
84
757
1.88
1.21
4.9
4.0
1.3
1.3
mmol/l
0.35
77
685
8
40
2.09
1.15
1.0
1.2
—
—
—
0
0
36
271
1.53
1.13
2.2
3.7
2.3
2.4
mmol/l
0.67
30
235
13
74
1.88
1.13
1.5
1.3
—
—
—
0
0
86
787
1.89
1.08
5.3
4.4
1.5
1.5
mmol/l
0.03
79
719
7
36
2.02
0.99
2.6
2.6
—
—
—
0
0
8
42
1.99
0.91
2.9
2.2
—
—
—
0
0
23
165
1.52
0.89
4.7
3.4
—
—
—
0
0
87
814
1.73
0.88
5.4
4.9
2.6
2.7
mmol/l
0.66
80
746
14
89
1.67
0.87
1.9
1.5
—
—
—
0
0
9
53
1.77
0.78
2.1
2.2
—
—
—
0
0
5
23
2.24
0.77
1.2
1.2
—
—
—
0
0
5
24
2.14
0.75
1.0
1.4
—
—
—
0
0
11
68
1.70
0.75
1.5
1.5
—
—
—
0
0
5
25
2.05
0.74
7.4
5.0
—
—
—
0
0
9
57
1.64
0.73
1.2
1.5
—
—
—
0
0
5
26
1.97
0.71
1.8
1.6
—
—
—
0
0
5
27
1.90
0.69
1.4
1.2
—
—
—
0
0
0
20
0.00
0.61
0.0
1.1
—
—
—
0
0
0
20
0.00
0.61
0.0
1.4
—
—
—
0
0
0
21
0.00
0.61
0.0
1.8
—
5.4
—
0
9
0
22
0.00
0.60
0.0
17.4
—
—
—
0
0
79
740
1.38
0.52
40.9
15.5
37.6
40.5
%
1.18
42
552
7
46
1.56
0.49
11.3
8.8
25.3
24.8
mmol/l
—
7
46
12
86
1.45
0.47
1.3
1.3
—
—
—
0
0
8
58
1.41
0.43
1.1
1.2
—
—
—
0
0
0
15
0.00
0.41
0.0
1.5
—
—
—
0
0
0
15
0.00
0.41
0.0
2.9
—
64.1
—
0
15
0
15
0.00
0.41
0.0
2.9
—
5.0
—
0
15
0
16
0.00
0.41
0.0
3.9
—
5.0
—
0
16
0
16
0.00
0.41
0.0
3.9
—
8.1
—
0
16
0
16
0.00
0.41
0.0
3.9
—
2.2
—
0
10
14
108
1.35
0.38
2.0
1.6
—
—
—
0
0
6
43
1.42
0.36
6.5
3.9
0.5
0.1
e6/l
—
6
43
25
216
1.21
0.29
5.1
2.8
—
—
—
0
0
31
277
1.18
0.25
7.5
3.7
255.9
34.1
e6/l
0.56
24
199
0
11
0.00
0.21
0.0
1.0
—
1.4
—
0
6
0
11
0.00
0.21
0.0
4.1
—
3.3
—
0
11
0
11
0.00
0.21
0.0
2.4
—
89.9
—
0
11
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
0
13
0.00
0.21
0.0
1.3
—
—
—
0
0
32
349
0.88
0.20
18.0
9.7
0.0
0.0
e9/l
0.26
27
285
6
51
1.19
0.20
1.8
1.5
—
—
—
0
0
6
76
0.78
0.16
1.5
1.5
—
—
—
0
0
15
171
0.85
0.16
2.7
5.1
—
—
—
0
0
55
575
0.90
0.16
4.8
3.8
—
—
—
0
0
26
239
1.12
0.14
6.3
3.2
387.8
48.8
e6/l
0.51
21
190
24
222
1.11
0.11
5.7
3.6
—
—
—
0
0
6
56
1.08
0.09
2.0
4.6
1.2
1.2
mmol/l
—
6
51
5
63
0.78
0.08
1.2
1.6
—
—
—
0
0
14
127
1.12
0.08
1.2
1.3
38.9
12.2
u/ml
—
5
49
71
695
1.08
0.08
50.6
18.9
331.5
332.4
g/l
0.28
71
695
9
86
1.05
0.07
1.7
1.6
—
—
—
0
0
24
230
1.06
0.04
1.4
1.7
1.5
1.5
mmol/l
0.06
24
195
14
134
1.05
0.00
2.5
1.7
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
0.00
0.0
1.9
—
32.4
—
0
8
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
7
73
0.96
0.00
4.0
1.8
11.2
13.6
nmol/l
—
7
66
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
118.0
—
0
6
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
0.00
0.0
2.0
—
—
—
0
0
0
6
0.00
0.00
0.0
8.8
—
0.7
—
0
6

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: VWXY20_STERI_VAROT_PETTA_KIRURGISEN_TAI_MUUN_LAAKETIETEELLISEN_HOIDON_AIKANA – Failure of sterile precautions during surgical operation

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).