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Rickettsioses

DOID EFO Endpoint Browser PheWeb

AB1_RICKETTSIOSES

spotted fever: a type of tick-borne disease which presents on the skin caused by bacteria of the genus Rickettsia.

Suggest a new description

Endpoint definition

↥

Endpoint definition steps

FinnGen

Phenotype data

520210

1. Apply sex-specific rule

None

520210

2. Check conditions

None

520210

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — A75-A79
  • Hospital discharge: ICD-9 — 08[2-3]
  • Hospital discharge: ICD-8 — 08[0-3]
  • Cause of death: ICD-10 — A75-A79
  • Cause of death: ICD-9 — 08[2-3]
  • Cause of death: ICD-8 — 08[0-3]

2 out of 7 registries used, show all original rules.

-

4. Check minimum number of events

None

-

5. Include endpoints

63

6. Filter based on genotype QC (FinnGen only)

63

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
2
First used in FinnGen datafreeze
DF2

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 591 237 350
Only index persons 501 200 301
Unadjusted period prevalence (%)
Whole population 0.01 0.01 0.01
Only index persons 0.01 0.01 0.01
Median age at first event (years)
Whole population 44.51 45.50 43.80
Only index persons 42.27 44.06 41.09

-FinnGen-

Key figures

All Female Male
Number of individuals 63 26 37
Unadjusted period prevalence (%) 0.01 0.01 0.02
Median age at first event (years) 49.93 44.78 53.55

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
57
Matched controls
568
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A78
ICD-10 Finland
Q fever
+∞
11.9
11
*
R50.9
ICD-10 Finland
Fever, unspecified
6.3
7.4
21
48
A77.9
ICD-10 Finland
Spotted fever, unspecified
+∞
6.4
6
*
A79.9
ICD-10 Finland
Rickettsiosis, unspecified
+∞
6.4
6
*

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
unit
cases
controls
-log10(p)
N cases
N controls
(3019768) Coxiella burnetii Ab [Presence] in Serum
6
0
+∞
6.35
4.3
0.0
—
—
—
0
0
(3052851) Hemolysis interference index of Serum or Plasma
9
16
6.36
3.81
3.7
4.1
—
—
—
0
0
(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma
21
95
2.82
3.37
1.8
1.7
mg/l
0.7
1.0
0.44
16
82
(3018095) Leukocytes [#/volume] in Urine
32
184
2.50
3.15
5.9
3.6
e6/l
14.4
83.7
0.73
24
142
(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count
19
85
2.77
3.09
4.3
2.5
e6/l
0.7
2.2
0.63
13
45
(3003458) Phosphate [Moles/volume] in Serum or Plasma
15
62
2.86
2.79
7.5
7.0
mmol/l
1.0
1.1
0.40
15
57
(46235355) HIV 1 and 2 tests - Meaningful Use set
20
97
2.56
2.75
2.0
1.7
—
—
—
0
0
(3000991) Gas panel - Venous blood
11
40
3.12
2.52
16.5
6.3
—
—
—
0
0
(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma
19
94
2.46
2.49
5.3
3.6
ng/l
752.4
38.9
0.48
14
69
(40762366) Oxygen capacity [Volume Fraction] in Arterial blood
9
28
3.57
2.42
14.4
6.8
—
—
—
0
0
(43054903) Holo-transcobalamin II [Moles/volume] in Serum
29
178
2.17
2.29
2.1
1.9
pmol/l
112.3
95.1
0.92
18
90
(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count
18
91
2.37
2.23
4.3
2.4
e6/l
0.8
0.6
0.19
12
52
(3037551) Cancer Ag 125 [Units/volume] in Serum or Plasma
7
19
4.01
2.22
1.1
2.0
u/ml
35.7
107.9
—
7
19
(3024889) Methemoglobin/Hemoglobin.total in Venous blood
7
20
3.80
2.12
2.6
2.8
%
0.5
0.8
—
7
20
(3004119) Hemoglobin [Mass/volume] in Venous blood
8
26
3.37
2.09
2.8
4.4
g/l
139.4
130.9
—
8
26
(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection
8
26
3.37
2.09
3.4
1.4
—
—
—
0
0
(3023368) Bacteria identified in Blood by Culture
23
134
2.13
2.03
6.6
4.4
—
—
—
0
0
(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count
29
186
2.04
1.98
4.9
3.1
—
—
—
0
0
(3042936) Bacteria identified in Isolate by Culture
15
74
2.35
1.94
1.7
1.7
—
—
—
0
0
(3021879) Hepatitis B virus core Ab [Presence] in Serum
10
40
2.78
1.94
1.5
1.4
—
—
—
0
0
(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood
7
22
3.44
1.94
2.6
2.7
%
1.8
1.6
—
7
22
(40758558) Short blood count panel - Blood
21
120
2.13
1.93
7.9
7.5
—
—
—
0
0
(3011397) Hemoglobin [Presence] in Urine by Test strip
19
105
2.16
1.90
2.8
3.8
—
—
—
0
0
(3002032) Base excess in Venous blood by calculation
10
42
2.64
1.78
6.6
4.3
mmol/l
1.9
2.1
—
10
33
(3021589) Normoblasts [#/volume] in Blood
32
220
1.92
1.74
13.0
9.8
e9/l
0.0
0.0
0.00
27
187
(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood
8
31
2.80
1.73
13.6
7.0
%
1.1
1.4
—
8
31
(3006217) Methemoglobin/Hemoglobin.total in Arterial blood
8
31
2.80
1.73
16.8
7.0
%
0.6
0.6
—
8
31
(3012544) pH of Venous blood
10
43
2.58
1.70
6.7
4.2
—
—
—
0
0
(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma
15
81
2.12
1.56
1.8
1.3
iu/ml
16.1
43.8
—
8
32
(3000620) Complement C3 [Mass/volume] in Serum or Plasma
5
15
3.52
1.55
1.2
1.3
g/l
1.5
1.0
—
5
15
(3017766) Complement C4 [Mass/volume] in Serum or Plasma
5
15
3.52
1.55
1.2
1.3
g/l
0.3
0.2
—
5
15
(3003284) Neutrophil cytoplasmic Ab.perinuclear [Titer] in Serum by Immunofluorescence
5
15
3.52
1.55
1.2
1.4
—
—
—
0
0
(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection
10
46
2.40
1.49
1.8
1.6
—
—
—
0
0
(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood
6
22
2.90
1.47
3.7
3.5
%
36.6
46.2
—
6
22
(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection
5
16
3.30
1.46
1.2
1.8
—
—
—
0
0
(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection
11
54
2.26
1.43
2.5
1.7
—
—
—
0
0
(3001122) Ferritin [Mass/volume] in Serum or Plasma
30
213
1.78
1.40
3.7
2.6
ug/l
166.9
124.5
0.51
30
198
(3001079) Blood group antibody screen [Presence] in Serum or Plasma
30
214
1.77
1.37
3.4
4.1
—
—
—
0
0
(3016417) Amylase.pancreatic [Enzymatic activity/volume] in Serum or Plasma
9
44
2.22
1.33
3.6
3.3
u/l
29.7
32.3
—
9
35
(3032080) INR in Blood by Coagulation assay
30
216
1.74
1.31
4.1
9.1
inr
1.2
1.3
—
9
68
(3008898) HLA-B27 [Presence]
5
18
2.92
1.31
1.0
1.1
—
—
—
0
0
(3021601) Nitrite [Presence] in Urine by Test strip
33
247
1.71
1.24
4.6
4.6
estimate
0.0
0.0
—
7
51
(36304419) Bacteria [Presence] in Urine
22
148
1.75
1.20
5.7
2.8
—
—
—
0
0
(3009261) Glucose [Presence] in Urine by Test strip
33
250
1.67
1.16
2.8
3.5
estimate
0.0
0.0
—
6
51
(42870588) Differential panel, method unspecified - Blood
23
158
1.72
1.16
7.5
6.4
—
—
—
0
0
(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection
10
52
2.10
1.13
2.1
1.6
—
—
—
0
0
(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma
19
125
1.74
1.11
3.3
2.9
ug/l
0.6
0.7
0.29
14
73
(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum
13
76
1.90
1.09
1.5
1.3
u/ml
6.3
16.9
—
7
28
(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture
9
47
2.06
1.08
2.0
3.6
—
—
—
0
0
(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis
5
22
2.38
1.05
1.4
1.3
—
—
—
0
0
(3022313) Gas panel - Capillary blood
5
22
2.38
1.05
1.2
3.8
—
—
—
0
0
(3002256) Pathology report gross observation
9
50
1.93
1.02
1.3
1.3
—
—
—
0
0
(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma
7
37
2.00
0.97
3.7
3.7
ng/l
157.9
186.0
—
7
31
(3035350) Ketones [Presence] in Urine by Test strip
32
249
1.58
0.96
2.9
3.4
estimate
0.0
0.0
—
7
54
(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection
10
56
1.93
0.94
2.7
1.8
—
—
—
0
0
(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection
36
290
1.56
0.92
3.4
3.2
—
—
—
0
0
(3020630) Protein [Mass/volume] in Serum or Plasma
8
44
1.93
0.90
1.5
2.1
g/l
65.0
66.3
—
8
39
(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection
12
74
1.77
0.85
2.3
2.1
—
—
—
0
0
(3017143) Hepatitis C virus Ab [Presence] in Serum
11
66
1.81
0.85
1.7
1.5
—
—
—
0
0
(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma
23
170
1.56
0.84
3.4
4.7
%
20.8
21.1
0.03
11
73
(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma
27
208
1.52
0.82
3.1
4.0
ng/l
20.3
24.4
0.47
19
148
(3019284) Hepatitis B virus surface Ag [Presence] in Serum
13
84
1.69
0.79
1.7
1.7
—
—
—
0
0
(46236098) ABO and Rh group [Type] in Blood by Confirmatory method
15
101
1.64
0.79
2.1
2.4
—
—
—
0
0
(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection
5
24
2.17
0.76
1.2
1.8
—
—
—
0
0
(3019198) Lymphocytes [#/volume] in Blood
31
249
1.48
0.76
10.9
6.4
e9/l
1.7
1.7
0.26
25
231
(3016293) Bicarbonate [Moles/volume] in Serum or Plasma
5
25
2.08
0.74
3.2
6.2
mmol/l
23.2
24.2
—
5
25
(3001604) Monocytes [#/volume] in Blood
30
241
1.47
0.73
10.9
6.2
e9/l
0.6
0.6
0.03
24
219
(3031040) Bacteria [#/volume] in Urine by Automated count
38
320
1.47
0.72
5.2
4.2
—
180.8
—
0
8
(3006315) Basophils [#/volume] in Blood
30
242
1.46
0.71
11.0
6.2
e9/l
0.0
0.0
0.22
24
220
(3022096) Basophils/100 leukocytes in Blood
28
224
1.45
0.68
11.2
6.5
%
0.8
0.7
0.92
28
211
(3037467) Urinalysis macro (dipstick) panel - Urine
40
344
1.45
0.65
5.2
4.2
—
—
—
0
0
(3003694) ABO and Rh group [Type] in Blood
17
124
1.51
0.64
1.6
1.4
—
—
—
0
0
(3013115) Eosinophils [#/volume] in Blood
30
246
1.42
0.63
11.3
6.8
e9/l
0.2
0.2
0.47
25
226
(3000494) Fungus identified in Specimen by Culture
10
64
1.67
0.63
1.3
1.4
—
—
—
0
0
(3030981) Hyaline casts [#/volume] in Urine by Automated count
5
30
1.72
0.63
2.2
3.0
e6/l
0.0
0.1
—
5
30
(40761535) Cells panel - Urine sediment
6
34
1.84
0.60
1.5
3.7
—
—
—
0
0
(3002030) Lymphocytes/100 leukocytes in Blood
29
239
1.40
0.58
11.3
6.5
%
29.7
26.8
0.81
29
226
(3004588) Protein electrophoresis panel - Serum or Plasma
6
37
1.69
0.57
1.3
1.4
—
—
—
0
0
(3006504) Eosinophils/100 leukocytes in Blood
28
230
1.39
0.57
11.4
6.5
%
2.9
2.7
0.30
28
217
(3019060) Gas panel - Arterial blood
6
39
1.59
0.54
3.0
4.6
—
—
—
0
0
(3019069) Monocytes/100 leukocytes in Blood
28
233
1.36
0.52
11.6
7.0
%
10.0
8.6
1.39
28
222
(3044889) 12 lead EKG panel
41
363
1.37
0.51
4.2
4.0
—
—
—
0
0
(3019832) Treponema pallidum Ab [Presence] in Serum
7
46
1.59
0.50
1.6
1.6
—
—
—
0
0
(3044640) Blood type and Crossmatch panel - Blood
18
140
1.40
0.49
2.7
2.5
—
—
—
0
0
(3018010) Neutrophils/100 leukocytes in Blood
28
235
1.34
0.48
11.5
6.4
%
54.5
58.4
0.88
28
223
(3033319) Streptococcus pyogenes Ag [Presence] in Throat
7
49
1.48
0.48
1.1
1.3
—
—
—
0
0
(3017044) Thyrotropin receptor Ab [Units/volume] in Serum
0
15
0.00
0.42
0.0
2.0
—
2.7
—
0
6
(3037121) Protein [Mass/volume] in Urine
0
16
0.00
0.41
0.0
4.5
—
0.2
—
0
9
(3008909) Norovirus RNA [Presence] in Stool by NAA with probe detection
0
16
0.00
0.41
0.0
1.4
—
—
—
0
0
(3010156) C reactive protein [Mass/volume] in Serum or Plasma by High sensitivity method
0
18
0.00
0.40
0.0
1.5
—
6.3
—
0
13
(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma
21
173
1.32
0.40
1.9
2.7
u/l
49.5
59.0
1.10
21
161
(3009542) Hematocrit [Volume Fraction] of Blood
49
454
1.36
0.39
27.4
15.7
%
39.3
40.2
0.32
42
344
(40768804) Tissue Pathology biopsy report
23
193
1.30
0.38
1.9
1.9
—
—
—
0
0
(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum
6
44
1.40
0.35
1.7
2.6
—
—
—
0
0
(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip
24
206
1.27
0.33
2.1
3.4
—
—
—
0
0
(43054914) Glucose tolerance 2 hours panel - Serum or Plasma
7
54
1.33
0.32
1.7
1.7
—
—
—
0
0
(3022145) Colonoscopy Study observation
7
55
1.31
0.31
1.9
1.2
—
—
—
0
0
(3048689) Calprotectin [Mass/mass] in Stool
7
55
1.31
0.31
2.9
1.3
ug/g
86.7
70.1
—
7
44
(3036481) Cortisol [Moles/volume] in Serum or Plasma
8
61
1.36
0.30
3.0
2.0
nmol/l
370.6
364.7
—
8
54
(3026008) Bacteria identified in Urine by Culture
16
133
1.27
0.28
3.6
2.6
—
—
—
0
0
(3013650) Neutrophils [#/volume] in Blood by Automated count
32
291
1.20
0.24
12.0
10.9
e9/l
3.5
4.2
1.32
26
262
(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection
5
38
1.34
0.24
1.6
1.8
—
—
—
0
0
(3017732) Neutrophils [#/volume] in Blood
5
41
1.24
0.22
4.8
3.8
e9/l
4.1
3.9
—
5
36
(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection
0
11
0.00
0.21
0.0
2.1
—
—
—
0
0
(40768793) Breast Pathology biopsy report
0
11
0.00
0.21
0.0
1.3
—
—
—
0
0
(3008757) Leukocyte morphology finding [Identifier] in Blood
0
11
0.00
0.21
0.0
3.5
—
—
—
0
0
(1616796) Gas panel - Central venous blood
0
10
0.00
0.21
0.0
3.6
—
—
—
0
0
(3020148) Glutamate decarboxylase 65 Ab [Units/volume] in Serum
0
10
0.00
0.21
0.0
1.0
—
—
—
0
0
(3013290) Carbon dioxide [Partial pressure] in Blood
0
12
0.00
0.21
0.0
3.8
—
4.9
—
0
12
(3027315) Oxygen [Partial pressure] in Blood
0
12
0.00
0.21
0.0
3.8
—
8.1
—
0
12
(3012501) Base excess in Blood by calculation
0
12
0.00
0.21
0.0
3.8
—
3.1
—
0
7
(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
(3006418) Campylobacter sp identified in Tissue by Organism specific culture
0
14
0.00
0.20
0.0
1.2
—
—
—
0
0
(3029937) Albumin [Presence] in Urine by Test strip
17
148
1.20
0.19
1.9
3.6
estimate
0.0
0.0
—
6
47
(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma
7
57
1.26
0.19
1.6
1.5
—
—
—
0
0
(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep
5
68
0.71
0.18
1.4
1.2
—
—
—
0
0
(3020564) Creatinine [Moles/volume] in Serum or Plasma
54
526
1.19
0.14
26.7
17.4
umol/l
103.2
81.0
0.57
54
526
(40761511) CBC panel - Blood by Automated count
54
526
1.19
0.14
15.0
14.7
—
—
—
0
0
(3041096) Erythrocytes [Presence] in Urine by Automated
17
153
1.15
0.13
2.3
2.8
—
—
—
0
0
(3013512) EKG study
16
144
1.15
0.12
4.1
3.9
—
—
—
0
0
(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture
10
86
1.19
0.11
1.4
1.4
—
—
—
0
0
(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma
6
55
1.10
0.09
1.5
4.7
ug/l
1.9
132.6
—
6
46
(3007853) Bacteria identified in Skin by Aerobe culture
7
63
1.12
0.08
1.6
1.6
—
—
—
0
0
(40768797) Stomach Pathology biopsy report
6
74
0.79
0.08
1.2
1.3
—
—
—
0
0
(3020460) C reactive protein [Mass/volume] in Serum or Plasma
52
511
1.10
0.04
23.6
14.2
mg/l
30.2
22.6
0.51
44
397
(3019550) Sodium [Moles/volume] in Serum or Plasma
52
512
1.09
0.03
27.8
16.7
mmol/l
139.5
139.8
0.32
52
499
(1761868) Lipid panel - Serum or Plasma
21
202
1.06
0.02
2.6
2.7
—
—
—
0
0
(40760892) CBC W Ordered Manual Differential panel - Blood
11
113
0.97
0.00
6.5
5.5
—
—
—
0
0
(3023103) Potassium [Moles/volume] in Serum or Plasma
52
516
1.04
0.00
28.2
16.7
mmol/l
4.0
4.0
0.06
52
502
(3005988) Vibrio sp identified in Specimen by Organism specific culture
0
6
0.00
0.00
0.0
2.8
—
—
—
0
0
(3025018) Bordetella pertussis Ab [Titer] in Serum
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3000963) Hemoglobin [Mass/volume] in Blood
56
561
0.98
0.00
30.8
21.7
g/l
134.4
135.2
0.15
56
555
(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(21494890) Protein electrophoresis panel - 24 hour Urine
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
(21493466) Plesiomonas shigelloides DNA [Presence] in Stool by NAA with non-probe detection
0
6
0.00
0.00
0.0
2.8
—
—
—
0
0
(3026389) Candida sp identified in Specimen by Organism specific culture
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3045788) Cell count panel - Pleural fluid
0
6
0.00
0.00
0.0
1.5
—
—
—
0
0
(3006588) Cancer Ag 15-3 [Units/volume] in Serum or Plasma
0
6
0.00
0.00
0.0
4.0
—
126.8
—
0
6
(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(3036428) Adenosine deaminase [Enzymatic activity/volume] in Pleural fluid
0
6
0.00
0.00
0.0
1.3
—
8.8
—
0
6
(40766048) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum by Immunoassay
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method
0
8
0.00
0.00
0.0
1.1
—
—
—
0
0
(3044242) Glucose [Moles/volume] in Arterial blood
0
7
0.00
0.00
0.0
2.1
—
—
—
0
0
(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(40759836) Histone Ab [Presence] in Serum by Immunoblot
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3025468) Yersinia sp identified in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma
0
9
0.00
0.00
0.0
1.6
—
—
—
0
0
(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3010813) Leukocytes [#/volume] in Blood
56
560
1.00
0.00
30.5
21.7
e9/l
6.7
6.7
0.10
56
551
(3010566) Parathyrin.intact [Moles/volume] in Serum or Plasma
0
9
0.00
0.00
0.0
3.3
—
—
—
0
0
(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(40760848) Basement membrane zone BP180 Ab [Units/volume] in Serum by Immunoassay
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3043109) Cytology report of Tissue fine needle aspirate Cyto stain
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
(3016914) Bacteria identified in Cerebral spinal fluid by Culture
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
(3004915) Chlamydophila pneumoniae IgA Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3022806) Fractional oxyhemoglobin in Capillary blood
0
9
0.00
0.00
0.0
1.6
—
88.5
—
0
9
(3014702) Chromogranin A [Moles/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
3.1
—
3.0
—
0
8
(3029075) Extractable nuclear Ab panel - Serum
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3024731) MCV [Entitic volume]
56
560
1.00
0.00
30.6
21.5
fl
91.3
91.4
0.07
56
555
(3021952) Alkaline phosphatase isoenzymes [Enzymatic activity/volume] in Serum or Plasma by Heat stability
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
(3024522) Salmonella sp identified in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.4
—
—
—
0
0
(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3012568) Campylobacter sp identified in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
(3044941) Cell count panel - Synovial fluid
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma
5
54
0.92
0.00
5.6
7.9
—
—
—
0
0
(3026361) Erythrocytes [#/volume] in Blood
56
560
1.00
0.00
30.6
21.6
e12/l
4.5
4.5
0.16
56
549
(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3028531) Enolase.neuron specific [Mass/volume] in Serum or Plasma
0
8
0.00
0.00
0.0
1.4
—
15.2
—
0
8
(4281824)
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3008832) Norclozapine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
9.4
—
765.2
—
0
5
(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.4
—
—
—
0
0
(3012413) Glucose [Moles/volume] in Serum or Plasma --2 hours post meal
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(40768441) Liver Pathology biopsy report
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
(3000093) Morphology [Interpretation] in Blood Narrative
0
8
0.00
0.00
0.0
1.6
—
—
—
0
0
(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection
0
7
0.00
0.00
0.0
2.4
—
—
—
0
0
(40757349) CD3+CD4+ (T4 helper) cells/CD3+CD8+ (T8 suppressor cells) cells [# Ratio] in Blood
0
5
0.00
0.00
0.0
1.6
—
—
—
0
0
(3000081) cloZAPine [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
12.4
—
1435.2
—
0
5
(3026285) Alpha 1 antitrypsin [Mass/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.0
—
1.4
—
0
5
(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection
0
9
0.00
0.00
0.0
1.3
—
—
—
0
0
(3023420) DNA double strand Ab [Units/volume] in Serum
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(40763082) Lactate dehydrogenase [Enzymatic activity/volume] in Pleural fluid by Lactate to pyruvate reaction
0
8
0.00
0.00
0.0
1.4
—
162.9
—
0
8
(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood
0
5
0.00
0.00
0.0
3.4
—
—
—
0
0
(3007461) Platelets [#/volume] in Blood
56
559
1.02
0.00
30.5
21.7
e9/l
242.9
249.0
0.30
56
550
(40768806) Pleura Pathology biopsy report
0
9
0.00
0.00
0.0
2.0
—
—
—
0
0
(3020491) Glucose [Moles/volume] in Blood
0
5
0.00
0.00
0.0
1.2
—
6.2
—
0
5
(3023601) Vancomycin resistant enterococcus [Presence] in Specimen by Organism specific culture
0
5
0.00
0.00
0.0
2.0
—
—
—
0
0
(3002523) Influenza virus A Ag [Presence] in Specimen
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0
(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot
0
7
0.00
0.00
0.0
1.3
—
—
—
0
0
(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood
0
5
0.00
0.00
0.0
3.4
—
—
—
0
0
(3019497) Choriogonadotropin.beta subunit free [Moles/volume] in Serum or Plasma
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(42868716) Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection
0
5
0.00
0.00
0.0
3.2
—
—
—
0
0
(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection
0
5
0.00
0.00
0.0
1.2
—
—
—
0
0
(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection
0
5
0.00
0.00
0.0
3.0
—
—
—
0
0
(3012441) Differential panel - Pleural fluid
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
(3003740) Influenza virus B Ag [Presence] in Specimen
0
8
0.00
0.00
0.0
1.3
—
—
—
0
0

Mortality – FinRegistry

↥

Association

Association between endpoint AB1_RICKETTSIOSES and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have AB1_RICKETTSIOSES.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

↥

Index endpoint: AB1_RICKETTSIOSES – Rickettsioses

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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