No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpoints |
83 |
6. Filter based on genotype QC (FinnGen only) |
80 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 2
- First used in FinnGen datafreeze
- DF13
Rickettsioses
based on the number of shared cases.
Similar with more cases:
Similar with less cases:
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 80 | 37 | 43 |
| Unadjusted period prevalence (%) | 0.02 | 0.01 | 0.02 |
| Median age at first event (years) | 47.81 | 38.36 | 55.95 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 83
- Matched controls
- 830
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A78
ICD-10 Finland
Q fever
+∞
18.4
17
*
A77.9
ICD-10 Finland
Spotted fever, unspecified
+∞
8.5
8
*
A79.9
ICD-10 Finland
Rickettsiosis, unspecified
+∞
8.5
8
*
R50.9
ICD-10 Finland
Fever, unspecified
3.9
7.0
26
87
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
24
74
4.16
7.24
6.6
6.7
104.54
103.88
mmol/l
0.32
24
74
25
103
3.04
4.70
4.2
2.4
0.62
2.08
e6/l
0.83
15
58
27
122
2.80
4.26
2.0
1.7
1.27
1.04
mg/l
0.22
22
102
20
78
3.06
4.09
7.0
6.4
1.02
1.03
mmol/l
0.11
20
72
25
113
2.73
3.91
4.1
2.3
0.77
0.82
e6/l
0.07
15
69
9
19
5.17
3.34
1.6
1.5
78.00
96.63
%
—
9
19
12
37
3.61
3.09
17.3
7.9
0.61
0.66
%
0.18
12
37
39
239
2.19
3.03
4.6
2.9
—
—
—
0
0
8
17
5.08
3.00
1.5
2.2
235.63
175.76
%
—
8
17
24
123
2.34
2.82
4.8
3.6
595.06
53.08
ng/l
0.48
18
87
15
62
2.73
2.72
3.0
2.9
28.60
30.53
u/l
0.18
15
49
11
37
3.27
2.61
16.5
7.9
1.30
1.38
%
0.11
11
37
8
22
3.91
2.43
3.0
1.9
37.45
95.23
u/ml
—
8
22
36
231
1.99
2.35
2.1
1.8
111.26
94.60
pmol/l
1.14
23
117
12
48
2.75
2.30
5.9
4.0
1.48
1.88
mmol/l
0.17
12
36
43
296
1.94
2.27
12.3
6.9
1.20
1.22
mmol/l
0.77
38
253
8
26
3.29
2.07
2.4
2.6
1.67
1.55
%
—
8
26
46
332
1.86
2.03
4.7
4.4
0.00
0.00
estimate
—
8
73
46
336
1.83
1.92
3.0
3.4
0.00
0.00
estimate
—
7
73
5
12
4.36
1.85
1.2
1.3
—
—
—
0
0
5
12
4.36
1.85
1.2
1.2
—
—
—
0
0
8
29
2.94
1.84
10.9
5.6
23.38
24.14
mmol/l
—
8
29
7
23
3.23
1.84
1.6
1.2
—
—
—
0
0
45
332
1.78
1.77
3.0
3.3
0.00
0.00
estimate
—
8
77
12
55
2.38
1.77
2.5
3.5
—
—
—
0
0
7
25
2.96
1.69
1.9
2.1
—
—
—
0
0
14
71
2.17
1.65
2.3
1.9
—
—
—
0
0
11
50
2.38
1.65
1.5
2.5
62.74
66.69
g/l
0.84
11
45
6
20
3.15
1.61
1.2
1.5
1.24
1.04
g/l
—
6
20
40
292
1.71
1.59
3.7
2.7
178.40
113.56
ug/l
1.14
40
276
6
22
2.86
1.46
1.2
1.5
—
—
—
0
0
5
17
3.06
1.38
1.4
1.8
95.80
297.12
ug/l
—
5
17
8
35
2.42
1.31
3.4
1.5
—
—
—
0
0
6
25
2.51
1.27
1.0
2.6
—
—
—
0
0
6
25
2.51
1.27
3.7
3.2
36.58
47.09
%
—
6
25
39
297
1.59
1.24
2.7
2.7
—
—
—
0
0
13
73
1.93
1.19
2.4
1.9
—
—
—
0
0
5
20
2.59
1.17
1.2
1.5
0.32
0.19
g/l
—
5
20
22
147
1.68
1.16
3.1
2.8
0.66
0.69
ug/l
0.10
16
88
7
32
2.29
1.11
1.3
1.7
—
—
—
0
0
5
21
2.47
1.10
1.2
1.8
—
—
—
0
0
39
304
1.53
1.09
9.6
13.0
1.26
1.22
inr
0.08
13
88
9
52
1.82
0.96
3.6
1.8
—
—
—
0
0
6
27
2.31
0.95
1.3
2.3
—
—
—
0
0
18
120
1.64
0.95
1.7
1.3
15.52
37.02
iu/ml
—
9
40
14
87
1.73
0.95
2.4
1.8
—
—
—
0
0
15
96
1.69
0.92
2.1
2.1
—
—
—
0
0
25
183
1.52
0.90
5.2
3.6
6.63
11.22
mg/mmol
0.49
19
121
52
442
1.47
0.89
3.5
3.4
—
—
—
0
0
15
97
1.67
0.89
2.8
1.8
—
—
—
0
0
8
44
1.90
0.89
4.0
3.9
150.00
170.46
ng/l
—
8
38
0
24
0.00
0.80
0.0
1.3
—
—
—
0
0
19
136
1.51
0.75
2.3
2.3
—
—
—
0
0
5
25
2.06
0.74
2.2
1.2
—
—
—
0
0
5
25
2.06
0.74
1.4
2.3
—
—
—
0
0
26
200
1.44
0.73
3.5
4.5
21.32
21.05
%
0.03
13
88
11
73
1.58
0.60
2.5
2.5
369.18
367.08
nmol/l
0.02
11
65
10
65
1.61
0.58
6.6
4.6
4.04
113.22
ug/l
—
10
54
45
391
1.33
0.58
15.5
10.4
3.74
4.12
e9/l
0.55
39
357
18
135
1.43
0.57
1.4
1.5
—
—
—
0
0
27
222
1.32
0.50
2.8
2.7
51.93
58.48
u/l
0.72
27
208
15
112
1.41
0.49
1.4
1.3
6.33
14.25
u/ml
—
7
42
72
682
1.42
0.43
24.7
13.2
25.78
20.19
mg/l
0.52
62
535
8
112
0.68
0.40
1.3
1.4
—
—
—
0
0
71
674
1.37
0.39
26.2
15.2
139.18
139.75
mmol/l
0.97
71
657
68
643
1.32
0.37
22.3
12.2
84.06
84.86
ml/min/173m2
0.10
63
529
6
43
1.43
0.36
6.0
4.5
4.73
4.67
pmol/l
—
6
38
6
44
1.39
0.35
3.7
1.7
—
—
—
0
0
71
677
1.34
0.34
26.5
15.2
3.97
3.97
mmol/l
0.00
71
659
31
271
1.23
0.34
2.5
3.3
—
—
—
0
0
10
76
1.36
0.29
1.4
1.4
—
—
—
0
0
5
70
0.70
0.27
5.6
7.5
—
—
—
0
0
5
37
1.37
0.24
2.2
2.9
0.00
0.10
e6/l
—
5
37
29
261
1.17
0.22
3.0
3.6
19.47
36.02
ng/l
0.69
20
173
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.6
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
6
47
1.30
0.21
1.7
1.8
—
—
—
0
0
22
195
1.17
0.20
2.5
3.5
0.00
0.00
estimate
—
7
68
73
709
1.25
0.19
27.4
15.7
94.58
78.53
umol/l
0.55
73
709
5
48
1.04
0.09
2.2
3.3
1.22
1.21
mmol/l
—
5
43
16
150
1.08
0.04
1.7
1.3
0.48
1.06
u/ml
—
5
46
0
8
0.00
0.00
0.0
2.3
—
—
—
0
0
0
8
0.00
0.00
0.0
2.3
—
—
—
0
0
0
8
0.00
0.00
0.0
2.3
—
—
—
0
0
0
8
0.00
0.00
0.0
2.4
—
—
—
0
0
0
8
0.00
0.00
0.0
2.4
—
—
—
0
0
0
8
0.00
0.00
0.0
1.5
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.6
—
—
—
0
0
0
7
0.00
-0.00
0.0
4.6
—
—
—
0
0
76
756
1.06
-0.00
32.3
20.0
133.63
136.09
g/l
0.74
76
748
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.4
—
17.34
—
0
5
5
52
0.96
-0.00
1.2
1.5
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
4.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
1.70
—
0
5
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
(40770918) von Willebrand factor (vWf).activity actual/normal in Platelet poor plasma by Immunoassay
0
5
0.00
-0.00
0.0
3.2
—
97.80
—
0
5
0
7
0.00
-0.00
0.0
2.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_RICKETTSIOSES_WIDE – Rickettsioses
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).