Multiple system atrophy (rare forms of Parkinsonism)

G6_MULTIPLE_SYSTEM_ATROPHY

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519972

1. Apply sex-specific rule

None

519972

2. Check conditions

None

519972

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 G90.3
  • Cause of death: ICD-10 G90.3

2 out of 7 registries used, show all original rules.

102

4. Check minimum number of events

None

102

5. Include endpoints

None

102

6. Filter based on genotype QC (FinnGen only)

100

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

All Female Male
Number of individuals 100 42 58
Unadjusted period prevalence (%) 0.02 0.01 0.03
Median age at first event (years) 70.44 69.48 71.13

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
102
Matched controls
1020
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
G90.3
ICD-10 Finland
Multi-system degeneration
+∞
147.1
102
*
N04BA02
ATC
levodopa and decarboxylase inhibitor; oral
121.8
124.0
70
18
110
Kela drug reimbursment
Parkinson's disease and comparable movement disrorders
123.0
105.1
56
10
G20
ICD-10 Finland
Parkinson disease
111.7
103.3
56
11
N87
ICPC
Parkinsonism
160.1
32.9
33
*
N04BC05
ATC
pramipexole; oral
12.5
31.8
39
48
N04BD01
ATC
selegiline; oral
92.3
20.6
22
*
N04BA03
ATC
levodopa, decarboxylase inhibitor and COMT inhibitor; oral
216.0
18.1
18
*
H02AA02
ATC
fludrocortisone; oral
52.1
18.1
21
5
N04BC04
ATC
ropinirole; oral
187.6
16.0
16
*
N04BD02
ATC
rasagiline; oral
160.5
13.8
14
*
193
Kela drug reimbursment
Rasagiline
134.6
11.7
12
*
XF606
NOMESCO Finland
Ortostatic test
+∞
11.7
11
*
R4130
NOMESCO Finland
Speech therapy
18.7
10.8
16
10
G23.2
ICD-10 Finland
Multiple system atrophy, parkinsonian type [MSA-P]
109.8
9.6
10
*
G23.3
ICD-10 Finland
Multiple system atrophy, cerebellar type [MSA-C]
+∞
9.5
9
*
AA1BG
NOMESCO Finland
Standard MRI examination of brain with high intensity magnet
5.5
8.8
19
41
I95.1
ICD-10 Finland
Orthostatic hypotension
8.1
8.6
19
28
G21.9
ICD-10 Finland
Secondary parkinsonism, unspecified
97.8
8.6
9
*
G23.9
ICD-10 Finland
Degenerative disease of basal ganglia, unspecified
97.8
8.6
9
*
J69.0
ICD-10 Finland
Pneumonitis due to food and vomit
16.3
8.5
13
9
G25.9
ICD-10 Finland
Extrapyramidal and movement disorder, unspecified
36.6
8.2
10
*
R29.8
ICD-10 Finland
Other and unspecified symptoms and signs involving the nervous and musculoskeletal systems
5.0
7.6
18
42
N28
ICPC
Limited function/disability (N)
21.9
7.3
10
5
SPAT1229
SPAT
Assessment of need for aid
5.0
7.3
17
39
R26.8
ICD-10 Finland
Other and unspecified abnormalities of gait and mobility
10.4
7.0
13
14
N03AE01
ATC
clonazepam; systemic
8.3
6.7
14
19
G23.8
ICD-10 Finland
Other specified degenerative diseases of basal ganglia
+∞
6.3
6
*
A06AD11
ATC
lactulose; oral
3.3
6.0
28
106

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
52
765
0.35
6.43
4.2
5.0
4.29
4.47
mmol/l
0.65
47
700
52
759
0.36
6.07
4.0
4.9
1.46
1.45
mmol/l
0.05
47
680
55
769
0.38
5.30
4.4
5.2
5.97
6.13
mmol/l
0.46
50
689
52
739
0.40
5.01
3.8
4.5
1.17
1.28
mmol/l
0.65
46
661
5
211
0.20
4.51
2.0
1.7
1.08
1.31
mmol/l
—
5
173
7
236
0.24
4.38
1.6
3.8
—
—
—
0
0
47
663
0.46
3.62
29.5
19.9
14.40
15.32
%
0.80
47
651
11
30
3.98
3.20
2.9
3.3
—
—
—
0
0
21
101
2.36
2.77
2.6
1.6
—
—
—
0
0
66
802
0.50
2.68
17.7
15.5
—
—
—
0
0
12
44
2.96
2.65
2.3
5.1
26.12
24.12
mmol/l
0.76
12
44
69
823
0.50
2.54
20.5
19.8
70.45
82.35
umol/l
3.57
69
823
73
853
0.49
2.46
27.6
24.2
4.26
4.44
e12/l
1.99
68
825
73
853
0.49
2.46
28.7
24.2
37.89
39.94
%
1.81
66
796
14
273
0.44
2.24
3.0
4.6
—
—
—
0
0
6
16
3.91
1.96
1.3
2.8
—
—
—
0
0
38
256
1.77
1.96
4.0
4.1
—
—
—
0
0
24
140
1.93
1.94
2.4
3.0
2.82
1.74
e6/l
0.20
15
88
15
272
0.47
1.93
1.5
2.4
51.40
73.04
u/l
—
10
249
21
336
0.53
1.84
1.8
2.2
—
—
—
0
0
60
724
0.58
1.83
4.7
4.9
1.86
2.04
mu/l
0.93
53
636
12
229
0.46
1.76
6.1
3.8
—
—
—
0
0
5
13
3.99
1.73
1.4
2.5
75.60
65.72
%
—
5
13
53
651
0.61
1.62
4.2
7.8
78.00
80.86
u/l
0.17
47
606
28
183
1.73
1.57
3.9
4.0
—
—
—
0
0
24
355
0.58
1.54
3.5
5.7
3.94
2.72
ug/l
0.33
19
314
36
254
1.64
1.52
3.5
3.1
0.93
0.37
e6/l
0.55
29
202
9
40
2.37
1.44
9.1
4.2
—
—
—
0
0
27
181
1.67
1.37
1.6
1.7
1067.95
1192.64
nmol/l
0.32
22
144
34
247
1.56
1.25
3.6
3.0
—
—
—
0
0
36
274
1.49
1.05
4.1
3.1
—
—
—
0
0
12
69
1.84
1.01
3.2
3.2
—
—
—
0
0
6
27
2.30
0.95
12.0
14.7
—
—
—
0
0
12
71
1.78
0.93
3.3
3.8
—
—
—
0
0
17
112
1.62
0.92
11.3
6.2
103.71
103.85
mmol/l
0.04
17
112
12
72
1.76
0.89
10.6
7.7
—
—
—
0
0
13
80
1.72
0.89
14.3
6.6
114.77
120.90
g/l
0.50
13
80
49
573
0.72
0.85
4.0
4.4
—
—
—
0
0
43
351
1.39
0.84
2.7
2.1
88.80
92.60
pmol/l
0.26
24
186
8
48
1.72
0.81
16.1
5.4
29.55
24.58
mmol/l
—
8
48
0
24
0.00
0.80
0.0
6.4
—
31.76
—
0
17
16
109
1.55
0.76
4.6
5.5
0.96
1.04
mmol/l
0.92
16
102
11
68
1.69
0.75
8.5
3.6
—
—
—
0
0
22
289
0.70
0.74
3.2
3.8
13.34
10.26
mg/mmol
0.10
13
181
39
320
1.35
0.72
3.9
3.9
118.33
51.59
e6/l
0.43
29
248
51
582
0.75
0.69
5.7
4.5
—
—
—
0
0
72
780
0.74
0.64
19.8
16.2
31.03
24.21
mg/l
0.84
61
634
23
176
1.40
0.64
4.8
4.7
1.02
1.02
kg/l
—
5
22
16
217
0.69
0.64
3.8
3.1
23041.36
8038.79
umol/l
0.28
11
174
31
376
0.75
0.63
3.9
6.5
—
—
—
0
0
27
214
1.36
0.61
5.4
7.0
—
—
—
0
0
0
20
0.00
0.61
0.0
1.3
—
—
—
0
0
52
582
0.78
0.55
3.8
4.1
14.67
15.04
pmol/l
0.40
43
513
42
479
0.79
0.51
5.4
10.0
5.73
4.32
e9/l
0.59
37
425
7
45
1.60
0.50
1.7
2.8
0.54
0.66
%
—
7
45
7
46
1.56
0.49
1.4
2.1
1.44
1.73
g/l
—
7
38
34
288
1.27
0.48
3.7
3.3
14.31
266.26
e6/l
0.62
27
232
7
48
1.49
0.48
1.7
2.8
1.34
1.11
%
—
7
48
5
33
1.54
0.42
6.6
6.1
34.64
255.57
mg/l
—
5
25
5
33
1.54
0.42
6.6
6.1
22.82
31.85
mg/l
—
5
25
0
15
0.00
0.41
0.0
1.3
—
—
—
0
0
0
15
0.00
0.41
0.0
5.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.0
—
1.64
—
0
11
0
16
0.00
0.41
0.0
1.1
—
23.45
—
0
11
0
17
0.00
0.41
0.0
3.0
—
105.94
—
0
17
0
17
0.00
0.41
0.0
1.3
—
—
—
0
0
0
17
0.00
0.41
0.0
3.0
—
—
—
0
0
0
17
0.00
0.41
0.0
3.0
—
3.96
—
0
17
9
67
1.38
0.39
1.3
1.4
—
—
—
0
0
0
19
0.00
0.39
0.0
1.2
—
—
—
0
0
34
387
0.82
0.38
4.2
4.6
34.22
44.26
ng/l
0.31
23
294
23
272
0.80
0.36
3.0
3.1
76.57
284.08
mg/l
0.43
16
182
7
98
0.69
0.32
1.6
1.7
—
—
—
0
0
7
52
1.37
0.32
1.6
3.1
116.29
126.04
g/l
—
7
52
30
262
1.21
0.31
1.8
2.4
—
—
—
0
0
43
391
1.17
0.29
10.3
5.7
1.20
1.21
mmol/l
0.60
37
355
6
83
0.71
0.25
2.2
3.5
—
—
—
0
0
6
84
0.70
0.25
1.3
3.3
5.33
9.92
umol/l
—
6
71
0
11
0.00
0.21
0.0
1.4
—
—
—
0
0
0
11
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
1.7
—
—
—
0
0
0
10
0.00
0.21
0.0
1.6
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
12
0.00
0.21
0.0
1.1
—
—
—
0
0
0
12
0.00
0.21
0.0
1.8
—
32.33
—
0
12
0
12
0.00
0.21
0.0
3.1
—
76.67
—
0
12
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
0
13
0.00
0.21
0.0
2.0
—
3.89
—
0
13
0
13
0.00
0.21
0.0
1.9
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
0
13
0.00
0.21
0.0
4.9
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
17
195
0.85
0.20
1.2
1.3
—
—
—
0
0
7
62
1.14
0.17
2.1
2.5
0.21
0.20
g/l
—
7
57
8
70
1.15
0.17
2.0
1.3
—
—
—
0
0
35
326
1.11
0.15
4.0
2.6
134.74
127.75
ug/l
0.12
30
293
59
565
1.10
0.15
6.2
4.7
—
3554.29
—
0
17
18
201
0.87
0.15
2.2
3.1
0.56
0.85
ug/l
0.56
13
145
13
146
0.87
0.11
1.5
1.6
2.60
3.09
g/l
—
5
87
5
46
1.09
0.10
1.2
1.3
218.20
144.43
u/ml
—
5
41
6
56
1.08
0.09
4.0
2.4
—
—
—
0
0
11
123
0.88
0.08
1.1
1.3
—
—
—
0
0
10
107
0.93
0.02
1.4
1.5
—
—
—
0
0
13
136
0.95
0.00
1.4
1.7
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
12.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
9
96
0.93
-0.00
1.2
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
7.6
—
46.20
—
0
5
0
6
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
43.20
—
0
5
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.9
—
0.87
—
0
7
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.8
—
1.59
—
0
6
0
5
0.00
-0.00
0.0
2.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0

Mortality – FinRegistry

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

Index endpoint: G6_MULTIPLE_SYSTEM_ATROPHY – Multiple system atrophy (rare forms of Parkinsonism)

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).