Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings

R18_ABNORMAL_FINDI_BRONCHIAL_WASHI_NASAL_SECRE_PLEURAL_FLUID_SPUTUM_THROAT_SCRAP

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — R84 Cause of death: ICD-10 — R84 2 out of 7 registries used, show all original rules.	103
4. Check minimum number of events None	103
5. Include endpoints None	103
6. Filter based on genotype QC (FinnGen only)	103

Control definitions (FinnGen only)

Control exclude: R18_ABNORMAL_FINDI_EXAMI_OTHER_BODY_FLUIDS_SUBST_TISSU_WO_DIAGNOSIS

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: R8[3-9]
Name in latin: Reperta abnormia in speciminibus ex organis respiratoriis et thorace

NAME	R18_ABNORMAL_FINDI_BRONCHIAL_WASHI_NASAL_SECRE_PLEURAL_FLUID_SPUTUM_THROAT_SCRAP
CONTROL_EXCLUDE	R18_ABNORMAL_FINDI_EXAMI_OTHER_BODY_FLUIDS_SUBST_TISSU_WO_DIAGNOSIS
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	R84
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	R84
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	103	46	57
Unadjusted period prevalence (%)	0.02	0.02	0.03
Median age at first event (years)	64.20	58.77	68.58

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
97: Matched controls
969

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

R84.6

ICD-10 Finland

Abnormal findings in specimens from respiratory organs and thorax, abnormal cytological findings

+∞

35.6

R84.9

ICD-10 Finland

Abnormal findings in specimens from respiratory organs and thorax, unspecified abnormal finding

+∞

22.8

UGC12

NOMESCO Finland

Flexible bronchoscopy

12.6

19.8

R84.0

ICD-10 Finland

Abnormal findings in specimens from respiratory organs and thorax, abnormal level of enzymes

+∞

17.2

R84.5

ICD-10 Finland

Abnormal findings in specimens from respiratory organs and thorax, abnormal microbiological findings

+∞

13.9

R91

ICD-10 Finland

Abnormal findings on diagnostic imaging of lung

8.1

13.6

R84.8

ICD-10 Finland

Abnormal findings in specimens from respiratory organs and thorax, other abnormal findings

+∞

9.5

H02AB06

ATC

prednisolone; systemic

3.1

6.8

349

UJD10

NOMESCO Finland

Esophagoscopy, gastroscopy and duodenoscopy

3.2

6.5

195

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection

8.62

14.09

4.4

1.8

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

4.45

7.53

2.0

1.4

—

(3019060) Gas panel - Arterial blood

4.24

7.34

5.8

3.4

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

142

3.22

6.79

2.5

1.8

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

4.71

6.05

5.0

3.4

1.82

1.21

0.87

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

3.32

5.91

2.1

1.7

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

3.25

5.71

2.1

1.7

—

(3023368) Bacteria identified in Blood by Culture

231

2.68

5.53

6.0

4.2

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

6.05

5.44

1.2

1.8

0.28

0.23

g/l

—

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

5.72

5.15

1.2

1.8

1.26

1.11

g/l

—

(3000494) Fungus identified in Specimen by Culture

3.27

5.10

2.9

1.6

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

158

2.72

5.01

2.1

1.6

3.21

1.03

mg/l

0.51

124

(4062490)

12.25

4.87

2.5

1.3

—

(3028192) IgG subclass 2 [Mass/volume] in Serum

12.25

4.87

2.3

1.3

1.95

2.09

g/l

—

(3020891) Body temperature

4.23

4.70

7.2

5.1

—

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

3.53

4.43

2.1

1.4

—

(40761535) Cells panel - Urine sediment

3.11

4.39

5.8

3.4

—

(3020630) Protein [Mass/volume] in Serum or Plasma

3.37

4.36

1.2

2.3

64.68

66.52

g/l

0.32

(3012544) pH of Venous blood

3.07

4.29

4.6

3.9

—

(3013115) Eosinophils [#/volume] in Blood

404

2.34

4.23

10.8

5.5

0.18

0.19

e9/l

0.23

353

(3027135) IgG subclass 1 [Mass/volume] in Serum

10.61

4.07

2.4

1.3

5.83

6.01

g/l

—

(3019198) Lymphocytes [#/volume] in Blood

400

2.29

4.04

10.5

5.1

1.75

1.99

e9/l

0.74

352

(3006315) Basophils [#/volume] in Blood

392

2.27

3.99

10.6

5.1

0.04

e9/l

0.03

336

(3001604) Monocytes [#/volume] in Blood

392

2.27

3.99

10.5

5.0

0.57

0.60

e9/l

0.39

336

(3024980) IgG subclass 4 [Mass/volume] in Serum

7.77

3.94

2.3

1.3

0.39

0.51

g/l

—

(3042936) Bacteria identified in Isolate by Culture

118

2.61

3.93

4.0

1.8

—

(3000991) Gas panel - Venous blood

3.04

3.90

13.2

7.3

—

(4034850)

3.99

3.75

19.0

16.7

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

114

2.58

3.73

9.0

5.1

1.05

1.01

mmol/l

0.28

100

(3011397) Hemoglobin [Presence] in Urine by Test strip

174

2.32

3.60

6.2

3.5

—

(3023419) Bacteria identified in Sputum by Culture

6.57

3.57

5.8

2.5

—

(3029937) Albumin [Presence] in Urine by Test strip

206

2.24

3.54

6.5

4.2

0.00

estimate

—

(3043849) Epstein Barr virus DNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection

10.51

3.54

2.8

3.0

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

341

2.14

3.53

7.8

4.4

32.68

54.80

ng/l

0.88

258

(3007853) Bacteria identified in Skin by Aerobe culture

2.67

3.53

2.6

1.6

—

(3003327) Ova and parasites identified in Stool by Light microscopy

5.37

3.46

1.8

1.4

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

395

2.07

3.24

13.7

5.7

1.20

1.21

mmol/l

0.78

331

(40760892) CBC W Ordered Manual Differential panel - Blood

160

2.23

3.14

9.4

5.2

—

(42870588) Differential panel, method unspecified - Blood

273

2.07

3.14

8.4

4.6

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

300

2.04

3.10

5.1

3.4

—

(3020779) Urea [Moles/volume] in Serum or Plasma

2.71

3.07

9.4

7.5

12.18

9.51

mmol/l

0.89

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

3.40

3.03

5.8

3.5

0.76

0.72

0.12

(40768797) Stomach Pathology biopsy report

104

2.42

3.02

1.3

—

(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

5.01

2.98

1.8

1.4

—

(3023150) Myeloperoxidase Ab [Units/volume] in Serum

5.01

2.98

5.4

1.2

—

(3022313) Gas panel - Capillary blood

3.02

2.94

10.0

2.9

—

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

3.21

2.78

18.4

7.1

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

130

2.22

2.76

1.2

14.19

21.67

iu/ml

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

6.29

2.73

1.0

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

348

1.92

2.68

6.5

3.8

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

295

1.93

2.66

6.0

4.0

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

5.71

2.58

1.0

1.3

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

5.71

2.58

1.0

1.1

—

(3028531) Enolase.neuron specific [Mass/volume] in Serum or Plasma

7.43

2.57

1.0

1.6

14.22

13.34

ug/l

—

(3009595) Pneumocystis jiroveci DNA [Presence] in Specimen by NAA with probe detection

7.43

2.57

1.2

1.4

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

2.72

2.47

12.6

4.6

26.05

25.18

mmol/l

0.30

(3000492) Spirometry study

2.72

2.47

1.3

1.6

—

(3035350) Ketones [Presence] in Urine by Test strip

383

1.86

2.46

5.8

3.7

0.00

estimate

—

(3009343) pH of Capillary blood

2.53

2.45

10.1

2.8

—

7.44

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

470

1.88

2.44

12.7

8.8

4.24

4.25

e9/l

0.01

406

(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma

5.23

2.44

1.2

1.3

—

(3042631) Mycobacterium sp identified in Specimen

6.50

2.40

2.4

4.1

—

(3002179) Metamyelocytes/100 leukocytes in Blood

2.66

2.38

3.9

5.4

2.83

0.31

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

4.83

2.30

1.5

1.4

—

(3009261) Glucose [Presence] in Urine by Test strip

389

1.82

2.29

5.9

3.7

0.00

estimate

—

(3012095) Magnesium [Moles/volume] in Serum or Plasma

132

2.07

2.28

5.8

2.7

0.80

0.82

mmol/l

0.36

119

(3012516) Albumin [Mass/volume] in Urine

229

1.88

2.27

3.7

3.1

32.41

56.91

mg/l

0.66

158

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

5.77

2.24

1.6

1.4

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

5.77

2.24

1.6

1.4

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

5.77

2.24

1.6

1.4

—

(3021960) Folate [Moles/volume] in Serum or Plasma

205

1.90

2.23

1.9

1.6

21.27

20.17

nmol/l

0.14

168

(3021601) Nitrite [Presence] in Urine by Test strip

383

1.79

2.20

7.4

4.9

0.00

estimate

—

(3037756) Immunofixation for Serum or Plasma

4.48

2.18

1.2

1.1

—

(3024928) Oxygen saturation in Venous blood

4.48

2.18

3.2

2.3

—

(3015736) pH of Urine

295

1.79

2.11

5.7

3.6

—

(3007844) Epstein Barr virus capsid IgM Ab [Units/volume] in Serum by Immunoassay

5.19

2.09

1.0

1.1

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

106

2.10

2.09

1.5

1.6

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

3.25

2.06

2.4

1.3

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

107

2.08

2.04

1.5

1.6

—

(3007164) IgA [Mass/volume] in Serum or Plasma

139

1.95

1.98

1.9

1.5

2.90

3.20

g/l

0.12

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

155

1.91

1.97

1.3

1.4

0.55

1.10

u/ml

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

3.91

1.96

1.7

1.3

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

3.91

1.96

1.2

1.3

—

(3025941) Bacteria identified in Stool by Culture

2.66

1.90

1.3

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

2.72

1.85

2.6

1.7

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

3.19

1.83

1.0

1.6

—

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

629

1.79

1.82

14.6

6.5

87.49

79.45

u/l

0.67

586

(46236952) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)

2.38

1.82

4.2

3.6

55.00

57.04

ml/min/173m2

—

(3020682) Albumin/Creatinine [Ratio] in Urine

244

1.73

1.79

4.6

3.7

4.36

7.56

mg/mmol

0.77

161

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

2.64

1.79

3.1

1.9

—

(3017181) Myelocytes/100 leukocytes in Blood

2.26

1.74

5.1

5.0

3.29

0.84

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

2.26

1.74

2.0

1.5

1.46

1.53

0.21

(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection

3.98

1.73

1.2

1.4

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

331

1.64

1.63

2.3

1.9

88.10

94.54

pmol/l

0.59

165

(3009035) Cobalamin (Vitamin B12) [Moles/volume] in Serum or Plasma

173

1.76

1.62

2.0

1.9

526.18

452.81

pmol/l

0.37

150

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

117

1.88

1.59

1.2

1.16

8.30

u/ml

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

2.30

1.57

17.5

6.9

0.75

0.70

0.15

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

2.30

1.57

17.6

6.9

1.33

1.27

0.10

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

438

1.61

1.56

3.1

2.9

—

(3008909) Norovirus RNA [Presence] in Stool by NAA with probe detection

2.71

1.54

2.1

1.1

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

3.45

1.54

1.0

1.1

—

(3012336) Haptoglobin [Mass/volume] in Serum or Plasma

2.35

1.52

2.1

1.4

1.24

1.40

g/l

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

2.11

1.51

1.6

1.4

—

(3019225) pH of Specimen

2.00

1.49

10.0

3.7

—

(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection

2.83

1.45

1.7

1.3

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

2.30

1.45

2.3

1.7

—

(3026008) Bacteria identified in Urine by Culture

257

1.62

1.44

3.7

3.0

—

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

2.59

1.32

1.2

—

(3024403) Complement+Immunoglobulin [Units/volume] in Red Blood Cells

2.59

1.32

1.2

1.3

—

(3044640) Blood type and Crossmatch panel - Blood

244

1.59

1.32

5.2

2.2

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

1.90

1.31

1.5

—

(3004588) Protein electrophoresis panel - Serum or Plasma

2.15

1.26

1.0

2.1

—

(40758558) Short blood count panel - Blood

211

1.60

1.26

4.6

6.6

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

2.71

1.23

1.8

1.9

—

(3032080) INR in Blood by Coagulation assay

341

1.51

1.20

18.2

9.7

1.52

1.28

inr

0.66

103

(36304419) Bacteria [Presence] in Urine

223

1.56

1.18

3.2

3.1

—

(3021440) Promyelocytes/100 leukocytes in Blood

1.97

1.12

5.6

5.1

0.00

0.22

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

2.03

1.11

1.3

1.5

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

182

1.57

1.11

5.3

2.1

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

2.45

1.10

1.4

1.2

—

(3018418) pH of Serum or Plasma

236

1.52

1.08

3.9

3.8

7.41

—

(3019832) Treponema pallidum Ab [Presence] in Serum

1.84

0.97

1.2

1.5

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

1.76

0.97

4.1

3.7

—

(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis

2.21

0.93

1.0

1.5

—

(36660697) Celiac disease serology panel - Serum

1.87

0.91

1.2

1.3

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.76

0.83

1.9

1.7

—

(3022621) pH of Urine by Test strip

1.72

0.81

1.9

2.2

—

(3052851) Hemolysis interference index of Serum or Plasma

0.00

0.78

0.0

2.8

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

771

1.49

0.78

38.8

14.9

18.51

23.19

mg/l

1.39

621

(3022145) Colonoscopy Study observation

1.63

0.76

1.5

1.3

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.58

0.74

5.9

10.4

—

(3018095) Leukocytes [#/volume] in Urine

300

1.36

0.73

4.8

3.8

11.31

77.60

e6/l

2.47

221

(3045414) Leukocytes [Presence] in Urine

1.82

0.67

2.8

1.5

—

(4010399)

1.52

0.53

1.7

1.3

—

(3037467) Urinalysis macro (dipstick) panel - Urine

539

1.27

0.53

8.1

4.4

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

703

1.31

0.53

28.5

14.3

78.69

75.72

ml/min/173m2

0.52

578

(3003694) ABO and Rh group [Type] in Blood

183

1.33

0.51

1.7

1.4

—

(3002256) Pathology report gross observation

1.45

0.47

1.1

1.3

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

1.49

0.44

2.0

1.9

—

(1761868) Lipid panel - Serum or Plasma

246

0.77

0.43

4.0

3.0

—

(3019145) Choriogonadotropin.beta subunit free [Mass/volume] in Serum or Plasma

0.00

0.41

0.0

1.5

—

(3043238) Trisomy 21 risk [Likelihood] in Fetus

0.00

0.41

0.0

1.5

—

(3049207) Fetal Trisomy 21 risk [Likelihood] Based on maternal age

0.00

0.41

0.0

1.3

—

(46235831) Pregnancy associated plasma protein A [Multiple of the median] adjusted in Serum or Plasma

0.00

0.41

0.0

1.3

—

(40763531) Fetal Nuchal fold [Multiple of the median] Thickness adjusted for maternal weight

0.00

0.41

0.0

1.3

—

(3047352) Trisomy 18 risk [Likelihood] in Fetus

0.00

0.41

0.0

1.3

—

(3008714) Choriogonadotropin [Multiple of the median] adjusted in Serum or Plasma

0.00

0.41

0.0

1.3

—

(3005033) Fetal Nuchal fold Thickness US

0.00

0.41

0.0

1.3

—

(3002582) Erythrocytes [#/volume] in Urine

265

1.24

0.40

3.9

3.3

11.20

71.71

e6/l

1.16

205

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

1.32

0.31

1.7

1.5

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

253

1.20

0.31

4.8

4.2

19.71

20.84

0.16

118

(40761536) Microorganisms panel - Urine sediment

1.31

0.29

4.5

3.5

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.27

0.28

2.3

1.8

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

812

1.19

0.22

39.9

17.4

85.25

82.26

umol/l

0.29

812

(40761511) CBC panel - Blood by Automated count

802

1.18

0.22

33.1

13.9

—

(3023511) Choriogonadotropin [Units/volume] in Urine

0.00

0.21

0.0

1.4

—

(3016650) Hepatitis A virus Ab [Presence] in Serum

0.00

0.21

0.0

1.0

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

0.21

0.0

2.3

—

(3035285) Chloride [Moles/volume] in Venous blood

0.00

0.21

0.0

2.3

—

105.27

—

(3041354) Potassium [Moles/volume] in Venous blood

0.00

0.21

0.0

2.3

—

4.04

—

(3039162) Centromere protein B Ab [Units/volume] in Serum

0.00

0.21

0.0

1.4

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.3

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.3

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.3

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.00

0.21

0.0

2.1

—

(3030981) Hyaline casts [#/volume] in Urine by Automated count

1.29

0.21

3.0

3.2

0.03

0.08

e6/l

—

(3042111) Morphology [Interpretation] in Bone marrow Narrative

0.00

0.20

0.0

1.6

—

(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method

0.00

0.20

0.0

1.1

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

0.77

0.15

2.4

1.3

—

(3044889) 12 lead EKG panel

529

1.09

0.11

5.3

4.2

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

155

1.12

0.09

2.5

3.4

2.48

2.46

mmol/l

0.22

133

(3009542) Hematocrit [Volume Fraction] of Blood

667

0.93

0.09

27.0

15.7

39.35

39.89

0.17

468

(3016417) Amylase.pancreatic [Enzymatic activity/volume] in Serum or Plasma

0.80

0.08

6.3

2.3

48.50

28.67

u/l

—

(4035726)

0.80

0.08

1.8

1.3

—

(40768804) Tissue Pathology biopsy report

305

1.07

0.07

2.7

2.0

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

729

1.05

0.04

4.5

4.0

1.22

1.26

mmol/l

0.18

650

(3041096) Erythrocytes [Presence] in Urine by Automated

211

1.05

0.03

4.4

3.6

—

(3013512) EKG study

246

0.97

0.00

5.9

4.3

—

(3035941) MCH [Entitic mass]

854

0.97

0.00

48.0

21.8

29.99

30.28

0.73

837

(3051651) Icteric interference index of Serum or Plasma

0.00

0.0

2.5

—

(3014702) Chromogranin A [Moles/volume] in Serum or Plasma

0.00

0.0

2.0

—

5.25

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

0.0

1.4

—

(3014148) Varicella zoster virus Ab [Titer] in Serum

0.00

0.0

1.6

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

0.0

1.0

—

(3013327) Hepatitis A virus IgM Ab [Presence] in Serum

0.00

0.0

1.0

—

(3025130) Human papilloma virus identified in Specimen

0.00

0.0

1.2

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3020491) Glucose [Moles/volume] in Blood

0.00

0.0

2.4

—

6.24

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.0

—

(3015183) Erythrocyte sedimentation rate

0.00

0.0

1.6

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.3

—

(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count

0.00

0.0

2.4

—

(3020717) Zinc [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

13.10

—

(1617658) Protocol used for examination of sentinel lymph nodes

0.00

0.0

1.0

—

(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.0

—

(3004915) Chlamydophila pneumoniae IgA Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3051611) Lipemic interference index of Serum or Plasma

0.00

0.0

2.4

—

(21492711) Cytomegalovirus IgG Ab avidity [Presence] in Serum or Plasma by Immunoassay

0.00

0.0

1.4

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.0

1.0

—

(3044936) Clostridioides difficile toxin A+B [Presence] in Stool by Immunoassay

0.00

0.0

1.0

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.0

—

(3000093) Morphology [Interpretation] in Blood Narrative

0.00

0.0

1.1

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: R18_ABNORMAL_FINDI_BRONCHIAL_WASHI_NASAL_SECRE_PLEURAL_FLUID_SPUTUM_THROAT_SCRAP – Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Abnormal findings in bronchial washings nasal secretions pleural fluid sputum throat scrapings (R18_ABNORMAL_FINDI_BRONCHIAL_WASHI_NASAL_SECRE_PLEURAL_FLUID_SPUTUM_THROAT_SCRAP)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints