Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519870

1. Apply sex-specific rule

only females

293145

2. Check conditions

None

293145

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 — O15
  • Hospital discharge: ICD-9 — 6426
  • Cause of death: ICD-10 — O15
  • Cause of death: ICD-9 — 6426

2 out of 7 registries used, show all original rules.

97

4. Check minimum number of events

None

97

5. Include endpoints

None

97

6. Filter based on genotype QC (FinnGen only)

92

Control definitions (FinnGen only)

Control exclude
O15_OEDEM_PROTUR_HYPERT

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF10
Parent code in ICD-10
O10-O16
Name in latin
Eclampsia

Case counts by codes

↥

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 602 602 -
Only index persons 597 597 -
Unadjusted period prevalence (%)
Whole population 0.02 0.02 -
Only index persons 0.02 0.02 -
Median age at first event (years)
Whole population - 28.59 -
Only index persons - 28.56 -

-FinnGen-

Key figures

All Female Male
Number of individuals 92 92 -
Unadjusted period prevalence (%) 0.03 0.03 -
Median age at first event (years) 28.27 28.27 -

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
97
Matched controls
970
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
O15.0
ICD-10 Finland
Eclampsia in pregnancy
+∞
40.5
36
*
O13
ICD-10 Finland
Gestational [pregnancy-induced] hypertension
+∞
32.1
29
*
6426A
ICD-9 Finland
Hypertension complicating pregnancy, childbirth and the puerperium, Eclampsia[ECLAMPSIA , ENNEN SYNNYTYSTÄ]
+∞
19.4
18
*
O15.1
ICD-10 Finland
Eclampsia in labour
+∞
17.2
16
*
O14.0
ICD-10 Finland
Mild to moderate pre-eclampsia
+∞
15.0
14
*
O14.1
ICD-10 Finland
Severe pre-eclampsia
+∞
13.9
13
*
O14.9
ICD-10 Finland
Pre-eclampsia, unspecified
148.4
12.8
13
*
6426B
ICD-9 Finland
Hypertension complicating pregnancy, childbirth and the puerperium, Eclampsia[ECLAMPSIA , SYNNYTYKSEN AIKANA]
+∞
11.7
11
*
MCA10
NOMESCO Finland
Lower uterine segment caesarean section
4.5
11.5
42
142
O15.2
ICD-10 Finland
Eclampsia in the puerperium
+∞
10.6
10
*
O82.11
ICD-10 Finland
Childbirth with an emergency caesarean section in an emergency
14.5
9.8
16
13
C07AG01
ATC
labetalol; systemic
98.2
8.6
9
*
8811
FHL
Cesarean section
7.9
8.1
18
27
6462A
ICD-9 Finland
Other complications of pregnancy, not elsewhere classified, Unspecified renal disease in pregnancy, without mention of hypertension
+∞
7.4
7
*
Z35.2
ICD-10 Finland
Supervision of pregnancy with other poor reproductive or obstetric history
8.2
7.0
15
21
MA2DE
NOMESCO Finland
Detailed ultrasound examination of fetus including color doppler method
3.5
6.9
30
110
O34.2
ICD-10 Finland
Maternal care due to uterine scar from previous surgery
3.7
6.1
22
71

TimeCodeWAS

↥

TimeCodeWAS is a tool for exploring time-dependent associations between an endpoint and health codes (diagnoses, lab tests, procedures, etc.).

The TimeCodeWAS analysis is done in three steps:

  1. Build a matched case-control set for this endpoint. Each case is matched to 5–10 controls on sex and year of birth, and controls must be at risk at the same age as the case's age of onset. TimeCodeWAS allows for controls to be reused.
  2. Count cases and controls. For each health code, and for each time window: tally the counts into a 2×2 table. To be eligible in a time window, a case or control must have data coverage for at least 50% of that time window.
  3. Perform association tests. If all cells of the 2×2 table have N≥10, then a χ² test is performed, otherwise a Fisher's exact test is done. The corresponding p-value and confidence interval are reported below, along with the standard odds ratio when a χ² test is done, or Fisher's MLE odds ratio otherwise.

TimeCodeWAS currently uses the same default set of time windows for all the endpoints. Please reach out to us if you have suggestions for better time windows for some endpoints. The default time windows are: TimeCodeWAS time windows

Sort & Filter
Sort
Odds Ratio
among windows:
Filter
Code & OMOP
Cases and controls with code
in
Odds Ratio
in
OMOP Concept
Code (OMOP Vocabulary) [OMOP Concept ID]
OMOP Concept Class / OMOP Domain
Odds Ratio
TimeCodeWAS O.R. time legend
Cases and controls with code
TimeCodeWAS Cases and Controls percentages time legend
Inpatient Hospital
21 (CMS Place of Service) [8717]
Visit / Visit
-4.4e-03 1.2e-01 3.1e+00 1.0e+50 5.0e+00 -4.6e-02 8.0e-01
33.73%/33.83% 13.25%/11.99% 26.51%/1.62% 72.29%/0.00% 63.86%/1.12% 11.11%/11.58% 57.69%/37.88%
Obstetrics / Gynecology
16 (Medicare Specialty) [38004461]
Physician Specialty / Provider
3.6e-01 2.6e+00 3.8e+00 1.0e+50 2.8e+00 1.1e+00 9.5e-01
44.58%/35.96% 68.67%/13.48% 51.81%/2.37% 86.75%/0.00% 30.12%/2.62% 38.27%/17.56% 64.10%/40.93%
Emergency Room Visit
ER (Visit) [9203]
Visit / Visit
2.0e-01 7.2e-01 3.5e+00 1.0e+50 — 3.1e-02 6.5e-01
27.71%/23.97% 18.07%/9.74% 22.89%/0.87% 37.35%/0.00% —/— 8.64%/8.40% 46.15%/30.86%
Pregnancy
W78 (ICPC) [2002001269]
ICPC2 / Condition
— 1.9e+00 3.1e+00 — 1.8e+00 1.2e+00 1.0e+00
—/— 18.07%/3.25% 14.46%/0.75% —/— 7.23%/1.25% 8.64%/2.67% 14.10%/5.70%
Routine postpartum follow-up
Z39.2 (ICD10) [45547306]
ICD10 code / Observation
— -1.0e+50 — — — 3.0e+00 6.8e-01
—/— 0.00%/1.50% —/— —/— —/— 28.40%/1.91% 8.97%/4.77%
Health check-up of pregnant person
SPAT1379 (SPAT) [2001700479]
SPAT / Procedure
— 2.1e+00 3.0e+00 — 1.9e+00 1.8e+00 1.1e+00
—/— 16.87%/2.50% 13.25%/0.75% —/— 7.23%/1.12% 9.88%/1.78% 8.97%/3.31%
paracetamol; oral, parenteral, rectal
N02BE01 (ATC) [21604344]
ATC 5th / Drug
-1.3e-01 2.7e-01 2.3e+00 — 3.0e+00 4.0e-01 5.7e-01
9.64%/10.86% 7.23%/5.62% 6.02%/0.62% —/— 13.25%/0.75% 7.41%/5.09% 28.21%/18.15%
2951-2 (LOINC) [3019550]
Lab Test / Measurement
2.2e-01 — — 1.0e+50 3.0e+00 7.4e-01 3.8e-01
8.43%/6.87% —/— —/— 7.23%/0.00% 13.25%/0.75% 8.64%/4.33% 17.95%/12.98%
2823-3 (LOINC) [3023103]
Lab Test / Measurement
2.4e-01 — — 1.0e+50 3.0e+00 7.4e-01 3.7e-01
8.43%/6.74% —/— —/— 7.23%/0.00% 13.25%/0.75% 8.64%/4.33% 17.95%/13.11%

LabWAS

↥
OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
43
186
3.36
7.73
2.3
1.8
1.99
1.03
mg/l
1.08
37
150
60
342
2.98
6.34
9.8
5.4
1.20
1.21
mmol/l
0.89
52
306
38
177
2.89
5.73
7.1
3.6
43.24
3.58
mg/mmol
1.10
29
101
35
157
2.92
5.64
1.4
1.5
314.29
692.22
titre
—
7
36
36
175
2.68
4.89
6.4
3.1
242.02
31.54
mg/l
1.28
26
106
32
147
2.76
4.85
3.0
3.4
—
—
—
0
0
63
405
2.58
4.73
3.0
2.6
—
—
estimate
—
0
0
20
71
3.29
4.73
10.1
4.8
1.08
1.06
mmol/l
0.18
20
58
44
241
2.51
4.64
3.3
6.0
0.98
1.05
inr
2.19
38
199
16
51
3.56
4.44
10.4
7.3
0.46
1.47
mmol/l
0.64
16
43
16
52
3.49
4.31
10.6
7.3
7.40
7.41
ph
—
8
34
40
225
2.32
3.84
2.0
2.7
8.13
15.83
ng/l
3.92
19
97
25
119
2.48
3.42
2.3
3.3
38.85
36.40
ng/l
0.03
13
55
36
207
2.18
3.18
5.9
3.0
7.39
7.40
ph
0.11
27
144
17
69
2.77
3.17
6.5
5.3
102.88
105.46
mmol/l
1.63
17
69
23
111
2.41
3.04
4.3
2.1
2.51
2.44
g/l
0.20
23
103
36
211
2.12
3.00
1.6
1.3
1.60
9.40
u/ml
1.85
23
93
21
98
2.46
2.98
4.8
2.1
23.14
24.58
%
0.21
21
92
38
229
2.08
2.94
1.4
1.4
17.49
27.38
iu/ml
—
8
80
5
6
8.69
2.78
1.0
1.7
11.38
11.67
umol/l
—
5
6
12
41
3.19
2.74
13.0
5.6
—
—
—
0
0
58
421
1.94
2.55
5.8
5.5
7.82
9.39
umol/l
1.86
53
402
13
54
2.63
2.31
5.5
1.9
7.39
7.41
ph
—
7
27
37
239
1.89
2.26
2.9
2.2
—
—
—
0
0
8
25
3.39
2.15
8.4
5.4
—
—
—
0
0
40
270
1.82
2.10
1.5
1.3
1.20
1.43
u/ml
0.12
14
70
18
92
2.17
2.06
1.8
1.5
—
—
—
0
0
9
33
2.90
1.99
12.3
5.1
23.52
25.40
mmol/l
—
9
33
8
27
3.13
1.98
9.9
8.9
0.93
0.74
%
—
8
27
8
27
3.13
1.98
9.9
9.0
1.34
1.23
%
—
8
27
8
28
3.02
1.91
9.9
8.8
94.62
95.24
%
—
8
28
72
590
1.85
1.89
6.2
4.2
—
—
—
0
0
5
12
4.33
1.84
3.8
5.3
3.82
3.71
mmol/l
—
5
12
0
46
0.00
1.76
0.0
1.3
—
—
—
0
0
5
13
3.99
1.73
3.8
4.9
1.66
0.98
mmol/l
—
5
13
6
19
3.29
1.69
1.5
1.3
—
—
—
0
0
7
25
2.94
1.68
1.3
1.3
—
—
—
0
0
8
32
2.63
1.64
5.1
1.8
24.14
24.89
mmol/l
—
8
32
5
14
3.70
1.63
3.4
3.6
25.52
24.09
mmol/l
—
5
14
12
57
2.26
1.63
1.3
1.1
—
—
—
0
0
11
51
2.30
1.57
6.0
1.9
1.11
1.91
mmol/l
0.33
11
42
40
289
1.65
1.57
1.8
1.8
—
—
—
0
0
33
227
1.69
1.55
4.1
3.0
0.00
0.00
estimate
-0.00
12
88
31
210
1.70
1.54
2.1
1.9
93.84
106.73
u/l
0.24
31
203
5
15
3.45
1.54
1.2
1.1
—
—
—
0
0
9
37
2.58
1.52
6.8
3.1
—
—
—
0
0
11
52
2.26
1.51
1.8
2.4
0.22
0.23
g/l
0.16
11
52
67
556
1.66
1.48
6.2
4.3
—
39.56
—
0
9
46
349
1.60
1.46
5.0
2.9
0.00
0.01
estimate
—
10
79
5
16
3.23
1.45
1.0
1.1
—
—
—
0
0
38
278
1.60
1.39
5.9
6.2
—
—
—
0
0
56
449
1.58
1.39
5.6
3.4
0.00
0.00
estimate
-0.00
12
90
14
76
1.98
1.38
1.6
1.3
925.48
102.42
u/ml
0.60
14
68
48
374
1.56
1.33
5.4
3.0
6.27
6.25
ph
0.04
32
230
5
18
2.87
1.30
7.8
2.5
46.40
59.50
%
—
5
18
5
18
2.87
1.30
4.6
4.4
36.84
36.95
°c
—
5
18
37
273
1.57
1.29
3.0
2.0
—
—
—
0
0
36
265
1.57
1.27
6.2
6.5
—
—
—
0
0
8
37
2.26
1.25
1.8
1.4
—
—
—
0
0
29
204
1.60
1.23
5.9
3.1
1.02
1.02
kg/l
1.02
21
138
55
450
1.51
1.17
5.7
3.4
0.00
0.00
estimate
—
10
90
15
89
1.81
1.15
1.0
1.3
—
—
—
0
0
54
444
1.49
1.10
5.7
3.3
0.00
0.00
estimate
-0.00
12
90
11
60
1.94
1.08
1.5
1.2
—
—
—
0
0
32
242
1.48
0.97
1.8
1.8
—
—
—
0
0
33
252
1.47
0.95
1.5
1.4
1.81
2.04
g/l
0.56
24
159
15
95
1.68
0.94
1.6
2.3
—
—
—
0
0
35
271
1.46
0.94
3.4
2.7
0.00
0.01
estimate
—
9
74
26
190
1.50
0.92
1.8
1.9
—
—
—
0
0
6
29
2.14
0.91
2.8
1.7
0.82
0.66
%
—
6
29
6
29
2.14
0.91
2.8
1.8
1.40
1.27
%
—
6
29
8
46
1.80
0.85
1.0
1.0
0.93
0.83
g/l
—
8
46
8
46
1.80
0.85
1.0
1.0
1.69
1.67
g/l
—
8
46
40
323
1.41
0.84
1.9
2.0
111.12
98.35
pmol/l
0.72
18
178
27
204
1.45
0.81
4.7
2.6
—
—
estimate
—
0
0
0
27
0.00
0.78
0.0
1.1
—
432.18
—
0
11
17
118
1.53
0.76
6.4
2.6
8.14
3.84
e6/l
0.35
11
54
13
85
1.61
0.73
2.8
1.8
388.03
2121.30
u/l
—
6
25
5
26
1.97
0.71
1.2
1.1
1.00
36.33
e6/l
—
5
15
5
26
1.97
0.71
1.2
1.1
127.00
123.19
e6/l
—
5
16
27
209
1.40
0.71
2.3
2.4
—
—
—
0
0
26
200
1.41
0.71
6.2
2.6
0.10
0.26
e6/l
0.74
21
136
12
78
1.61
0.69
1.3
1.2
—
—
—
0
0
17
121
1.49
0.68
1.1
1.2
—
—
—
0
0
28
220
1.38
0.67
5.7
4.6
—
—
—
0
0
5
28
1.83
0.67
1.2
1.3
—
—
—
0
0
29
234
1.34
0.59
6.1
2.7
13.14
56.95
e6/l
0.94
23
169
6
35
1.76
0.59
1.0
1.7
0.25
0.23
g/l
—
6
35
6
35
1.76
0.59
1.0
1.1
—
—
—
0
0
6
37
1.66
0.56
1.0
1.7
1.28
1.16
g/l
—
6
37
88
843
1.47
0.47
19.2
10.1
3.90
3.87
mmol/l
0.43
88
822
88
843
1.47
0.47
18.9
10.1
139.16
139.83
mmol/l
2.18
88
826
88
842
1.49
0.47
7.4
5.7
1.71
1.68
mu/l
0.07
88
809
13
95
1.43
0.46
1.3
1.3
252.46
143.67
u/ml
—
7
43
16
122
1.37
0.46
1.6
1.7
1109.55
948.55
mu/l
0.27
11
105
5
32
1.59
0.43
4.4
2.0
115.80
138.00
g/l
—
5
32
13
97
1.39
0.42
1.4
1.3
—
—
—
0
0
5
34
1.50
0.41
1.0
1.1
—
—
—
0
0
89
857
1.47
0.40
16.6
11.2
18.79
17.98
mg/l
0.10
77
657
11
81
1.40
0.38
4.1
3.5
4.45
4.65
pmol/l
0.35
11
73
88
846
1.43
0.38
5.3
4.2
4.78
4.86
mmol/l
0.38
88
821
33
287
1.23
0.37
2.0
2.1
—
—
—
0
0
11
84
1.35
0.31
1.9
1.6
1120.05
1062.07
nmol/l
0.11
11
66
15
182
0.79
0.29
1.3
1.6
—
—
—
0
0
16
132
1.25
0.28
4.0
2.2
492.56
559.89
mosm/kgh2o
0.52
16
114
5
71
0.69
0.27
1.2
1.3
—
—
—
0
0
5
71
0.69
0.27
1.2
1.4
—
—
—
0
0
5
72
0.68
0.27
1.2
1.4
—
—
—
0
0
5
70
0.70
0.27
1.2
1.3
—
—
—
0
0
9
72
1.28
0.26
1.1
1.1
—
—
—
0
0
17
144
1.22
0.24
1.9
1.5
—
—
—
0
0
5
39
1.30
0.23
1.4
1.6
0.45
0.35
nmol/l
—
5
31
0
11
0.00
0.21
0.0
1.4
—
23.43
—
0
11
9
110
0.80
0.21
1.6
1.1
—
—
—
0
0
9
110
0.80
0.21
1.2
1.3
—
—
—
0
0
11
90
1.25
0.20
2.4
2.3
—
21.64
—
0
7
7
58
1.22
0.18
1.6
1.3
—
—
—
0
0
7
59
1.20
0.18
8.7
4.4
—
0.07
—
0
15
5
66
0.74
0.17
1.2
1.4
—
—
—
0
0
32
296
1.12
0.16
7.1
3.5
7.15
33.18
e6/l
1.00
23
183
81
789
1.16
0.16
4.4
3.5
1.42
1.16
mmol/l
1.86
81
754
8
96
0.82
0.14
1.8
1.9
368.88
386.98
nmol/l
—
8
91
11
96
1.16
0.11
1.5
1.3
—
—
—
0
0
6
55
1.10
0.09
10.0
4.3
—
0.00
—
0
14
6
58
1.04
0.08
10.0
4.2
—
1.00
—
0
16
5
60
0.82
0.08
1.0
1.1
—
—
—
0
0
7
63
1.12
0.08
1.6
1.7
—
—
—
0
0
7
68
1.03
0.08
2.0
2.4
—
—
—
0
0
8
93
0.85
0.07
2.9
1.7
—
—
—
0
0
39
399
0.96
0.02
3.0
2.6
—
—
—
0
0
41
401
1.04
0.02
2.1
1.8
—
—
—
0
0
13
127
1.03
0.00
1.5
1.2
—
—
—
0
0
6
61
0.98
0.00
1.7
1.6
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.3
—
3.92
—
0
8
0
6
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.5
—
233.33
—
0
6
0
7
0.00
-0.00
0.0
1.1
—
1.31
—
0
7
0
9
0.00
-0.00
0.0
1.0
—
47.76
—
0
9
0
5
0.00
-0.00
0.0
1.0
—
0.03
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.6
—
5.72
—
0
5
0
5
0.00
-0.00
0.0
4.0
—
10.84
—
0
5
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
6
59
1.02
-0.00
10.0
4.2
—
0.67
—
0
18
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
58.86
—
0
7
0
7
0.00
-0.00
0.0
1.0
—
68.00
—
0
7
0
8
0.00
-0.00
0.0
2.3
—
106.13
—
0
8
0
5
0.00
-0.00
0.0
1.0
—
149.20
—
0
5
0
6
0.00
-0.00
0.0
1.0
—
2.25
—
0
6
0
8
0.00
-0.00
0.0
2.3
—
1.17
—
0
8
0
5
0.00
-0.00
0.0
1.2
—
29.40
—
0
5
0
5
0.00
-0.00
0.0
4.6
—
13.14
—
0
5
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0

Mortality – FinRegistry

↥

Association

Association between endpoint O15_ECLAMPSIA and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have O15_ECLAMPSIA.

N-year risk Females Males
1 No data No data
5 No data No data
10 No data No data
15 No data No data
20 No data No data

Relationships between endpoints

↥

Index endpoint: O15_ECLAMPSIA – Eclampsia

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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