No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
144 |
4. Check minimum number of eventsNone |
144 |
5. Include endpointsNone |
144 |
6. Filter based on genotype QC (FinnGen only) |
136 |
Control definitions (FinnGen only)
- Control exclude
- AB1_MYCOSES
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Chromomycosis and phaeomycotic abscess
based on the number of shared cases.
Similar with more cases:
- Mycoses
- Certain infectious and parasitic diseases
- Any operation in hilmo
- Any event in hilmo or specialist outpatient
- Any prescribed medicine buy
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 136 | 84 | 52 |
| Unadjusted period prevalence (%) | 0.03 | 0.03 | 0.02 |
| Median age at first event (years) | 54.72 | 50.08 | 62.21 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 144
- Matched controls
- 1440
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
B43.2
ICD-10 Finland
Subcutaneous phaeomycotic abscess and cyst
+∞
167.0
126
*
S10
ICPC
Boil/carbuncle
11.4
31.7
38
44
L72.1
ICD-10 Finland
Trichilemmal cyst
6.8
14.0
24
41
B43.9
ICD-10 Finland
Chromomycosis, unspecified
+∞
12.7
12
*
L02.2
ICD-10 Finland
Cutaneous abscess, furuncle and carbuncle of trunk
9.8
11.0
22
26
R4110
NOMESCO Finland
Physiotherapy
3.0
8.6
53
235
R22.1
ICD-10 Finland
Localized swelling, mass and lump, neck
10.4
8.5
16
17
L02.4
ICD-10 Finland
Cutaneous abscess, furuncle and carbuncle of limb
8.4
8.5
18
24
A97
ICPC
No disease
3.1
7.6
38
149
J01FF01
ATC
clindamycin; systemic
2.6
6.5
50
244
ZXE10
NOMESCO Finland
More than one and less than three hours
2.5
6.4
61
329
JN3AE
NOMESCO Finland
Abdominal ultrasound examination
3.2
6.0
27
98
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
40
172
2.84
6.68
3.8
2.9
0.79
2.33
e6/l
1.48
11
99
61
327
2.50
6.53
3.8
2.7
0.24
0.28
e6/l
0.09
38
242
42
193
2.66
6.13
3.4
2.7
0.62
1.11
e6/l
0.77
13
119
15
37
4.40
4.56
9.3
7.8
24.06
24.48
mmol/l
0.21
15
37
19
69
3.02
4.21
1.7
1.4
—
—
—
0
0
36
183
2.29
4.10
4.3
3.4
135.57
117.46
ng/l
0.05
23
128
16
54
3.21
3.99
9.1
6.6
94.48
94.71
%
0.11
16
54
6
5
12.43
3.79
1.7
1.0
—
—
—
0
0
16
57
3.03
3.66
9.1
6.2
1.56
1.46
%
0.12
16
57
16
57
3.03
3.66
8.9
6.2
0.51
0.72
%
1.41
16
57
10
23
4.59
3.38
3.0
2.7
56.20
60.30
%
—
10
23
10
23
4.59
3.38
2.9
2.6
4.31
5.20
e9/l
—
10
23
9
19
4.98
3.29
1.2
1.6
—
—
—
0
0
12
34
3.75
3.28
1.2
2.8
—
—
—
0
0
16
61
2.83
3.26
5.0
7.1
24.46
24.85
mmol/l
0.20
16
61
62
422
1.82
3.05
4.6
3.0
—
—
—
0
0
5
5
10.29
3.00
1.0
3.0
—
—
—
0
0
5
5
10.29
3.00
1.0
3.0
—
—
—
0
0
71
510
1.77
2.87
6.9
6.6
1.21
1.22
mmol/l
0.08
64
434
110
907
1.90
2.72
9.1
7.0
82.37
78.81
u/l
0.17
110
843
11
35
3.32
2.71
1.2
1.6
—
—
—
0
0
23
115
2.19
2.69
2.7
1.7
—
—
—
0
0
23
116
2.17
2.64
2.6
1.6
—
—
—
0
0
124
1078
2.08
2.44
24.0
14.2
14.31
14.51
%
0.20
124
1065
41
262
1.79
2.40
2.4
2.1
2.86
2.97
mg/l
0.12
35
227
5
8
6.42
2.39
1.2
1.0
—
—
—
0
0
65
476
1.67
2.32
11.2
11.6
1.11
1.21
inr
0.63
24
159
134
1209
2.56
2.26
18.6
12.2
26.76
23.01
mg/l
0.55
113
925
23
124
2.02
2.23
8.7
6.7
105.35
104.03
mmol/l
0.56
23
124
42
276
1.74
2.22
2.5
2.0
—
—
—
0
0
5
10
5.13
2.09
2.6
2.0
470.40
600.50
e6/l
—
5
10
85
683
1.60
1.99
14.6
9.3
4.41
4.00
e9/l
0.51
76
596
47
329
1.64
1.94
1.5
1.7
1.80
1.32
mmol/l
1.38
42
280
0
50
0.00
1.93
0.0
1.5
—
—
—
0
0
7
22
3.29
1.90
1.1
1.3
—
—
—
0
0
7
22
3.29
1.90
1.1
1.3
—
—
—
0
0
40
273
1.64
1.81
1.7
1.7
—
—
—
0
0
39
266
1.64
1.77
1.7
1.9
0.86
0.95
mg/l
0.13
33
202
0
46
0.00
1.74
0.0
1.4
—
—
—
0
0
0
46
0.00
1.74
0.0
1.4
—
—
—
0
0
0
46
0.00
1.74
0.0
1.4
—
—
—
0
0
17
90
2.01
1.74
2.9
5.0
0.31
2.16
mmol/l
1.41
17
71
10
41
2.54
1.68
1.4
1.4
—
—
—
0
0
132
1217
2.02
1.53
19.1
13.2
139.43
139.71
mmol/l
0.56
132
1184
11
52
2.21
1.48
3.4
1.5
—
—
—
0
0
7
143
0.46
1.29
5.3
6.7
—
—
—
0
0
25
165
1.62
1.29
2.6
1.8
—
—
—
0
0
70
576
1.42
1.26
3.7
3.5
0.10
0.01
estimate
0.44
20
143
70
578
1.41
1.22
5.0
4.6
0.00
0.01
estimate
0.50
19
133
5
19
2.69
1.22
2.0
1.7
—
—
—
0
0
70
582
1.39
1.16
3.8
3.5
0.00
0.00
estimate
-0.00
18
126
122
1121
1.58
1.15
18.0
11.1
88.50
86.76
ml/min/173m2
0.40
105
913
7
31
2.32
1.12
1.9
1.3
—
—
—
0
0
11
59
1.94
1.10
2.2
1.3
—
—
—
0
0
8
41
2.01
1.10
1.3
3.4
11.25
206.03
u/ml
—
8
34
10
53
1.95
1.04
2.4
1.5
318.70
326.57
mu/l
—
10
47
20
133
1.59
1.01
8.6
6.0
1.04
1.07
mmol/l
0.19
20
122
14
86
1.70
0.95
2.6
2.5
61.20
71.61
ml/min/173m2
—
5
31
6
30
2.04
0.88
1.5
2.0
—
—
—
0
0
5
23
2.21
0.77
1.0
1.4
—
—
—
0
0
93
842
1.30
0.74
4.2
3.5
—
—
—
0
0
16
110
1.51
0.72
2.9
4.4
2.56
46.26
ug/l
0.56
11
87
5
26
1.96
0.71
1.2
1.3
—
0.01
—
0
6
5
28
1.81
0.67
1.8
2.6
0.00
0.00
g/l
—
5
28
8
50
1.63
0.62
1.4
2.0
—
—
—
0
0
66
584
1.24
0.59
3.5
2.3
—
—
—
0
0
12
82
1.51
0.56
2.9
4.3
1.25
1.23
mmol/l
0.60
12
71
6
38
1.60
0.55
1.0
1.2
—
—
—
0
0
6
40
1.52
0.52
1.0
1.2
—
—
—
0
0
133
1286
1.45
0.50
13.0
9.5
26.80
25.94
u/l
0.30
133
1239
27
224
1.25
0.42
1.3
1.4
—
—
—
0
0
0
15
0.00
0.41
0.0
4.5
—
86.71
—
0
15
0
15
0.00
0.41
0.0
1.3
—
—
—
0
0
10
71
1.44
0.40
1.0
1.0
—
—
—
0
0
15
116
1.33
0.39
2.3
3.4
—
—
—
0
0
5
36
1.40
0.38
1.8
2.3
—
—
—
0
0
6
43
1.41
0.35
1.8
3.4
170.00
166.95
%
—
6
43
39
345
1.18
0.33
4.3
3.6
0.05
0.01
estimate
0.39
19
126
93
883
1.15
0.30
4.6
3.8
11.99
10.13
mm/h
0.64
87
807
22
188
1.20
0.27
1.7
1.6
1220.65
1259.18
nmol/l
0.07
17
144
23
200
1.18
0.24
2.3
2.3
—
—
—
0
0
10
79
1.29
0.23
1.0
1.3
—
—
—
0
0
37
336
1.14
0.23
3.1
4.0
3.75
10.93
mg/mmol
1.83
21
205
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
2.1
—
—
—
0
0
0
14
0.00
0.20
0.0
2.1
—
—
—
0
0
0
14
0.00
0.20
0.0
2.1
—
—
—
0
0
44
409
1.11
0.18
2.3
3.5
47.10
28.99
ng/l
0.39
25
256
10
121
0.81
0.18
1.9
1.6
—
—
—
0
0
39
364
1.10
0.15
2.5
2.3
59.67
55.27
u/l
0.23
39
332
113
1105
1.11
0.15
5.8
4.7
1.48
1.86
mu/l
3.91
106
1008
19
211
0.89
0.14
1.8
1.8
440.53
484.98
pmol/l
0.67
19
175
5
43
1.17
0.10
1.2
2.3
—
—
—
0
0
27
253
1.08
0.09
4.7
4.2
17.47
21.51
%
0.69
15
122
22
204
1.09
0.09
1.4
1.2
10.11
9.46
u/ml
0.02
11
80
28
295
0.94
0.07
1.4
1.3
6.85
1.60
u/ml
0.44
11
79
9
85
1.06
0.07
2.8
1.9
—
—
—
0
0
9
85
1.06
0.07
1.4
2.5
11.62
5.89
ug/l
—
9
78
12
109
1.11
0.06
2.4
2.0
—
—
—
0
0
22
210
1.06
0.04
1.4
1.2
16.35
35.24
iu/ml
1.06
11
69
44
431
1.03
0.02
2.5
1.8
100.06
96.67
pmol/l
0.27
18
203
83
837
0.98
0.01
3.7
3.0
52.65
42.34
u/l
0.64
83
791
18
186
0.96
0.00
1.9
2.0
—
—
—
0
0
47
467
1.01
0.00
4.3
3.5
—
—
—
0
0
0
6
0.00
0.00
0.0
3.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
3.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
1022.33
—
0
6
0
6
0.00
0.00
0.0
2.2
—
10.83
—
0
6
(3011547) Coagulation factor VII activity actual/normal in Platelet poor plasma by Coagulation assay
0
7
0.00
-0.00
0.0
1.1
—
122.71
—
0
7
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
5.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
46.42
—
0
5
0
8
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.1
—
0.29
—
0
9
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
60.80
—
0
5
0
7
0.00
-0.00
0.0
1.3
—
—
—
0
0
(40770918) von Willebrand factor (vWf).activity actual/normal in Platelet poor plasma by Immunoassay
0
8
0.00
-0.00
0.0
2.5
—
111.13
—
0
8
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
7.14
—
0
5
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
81.60
—
0
5
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.2
—
14.66
—
0
5
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.9
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_CHROMOMYCOCIS_WIDE – Chromomycosis and phaeomycotic abscess
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).