Foreign object accidentally left in body during surgical and medical care

VWXY20_FOREI_OBJECT_ACCIDENTALLY_LEFT_BODY_SURGI_MEDICAL_CARE

No definition available.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — Y61 Cause of death: ICD-10 — Y61 2 out of 7 registries used, show all original rules.	109
4. Check minimum number of events None	109
5. Include endpoints None	109
6. Filter based on genotype QC (FinnGen only)	109

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 4
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: Y6

NAME	VWXY20_FOREI_OBJECT_ACCIDENTALLY_LEFT_BODY_SURGI_MEDICAL_CARE
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	Y61
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	Y61
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Foreign object accidentally left in body during surgical and medical care based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	109	80	29
Unadjusted period prevalence (%)	0.02	0.03	0.01
Median age at first event (years)	52.93	47.75	67.23

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
98: Matched controls
980

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

Y61

ICD-10 Finland

Foreign object accidentally left in body during surgical and medical care

+∞

59.6

Y61.9

ICD-10 Finland

Foreign object accidentally left in body during surgical and medical care during unspecified surgical and medical care

+∞

15.0

Y61.0

ICD-10 Finland

Foreign object accidentally left in body during surgical and medical care during surgical operation

+∞

13.9

Y61.8

ICD-10 Finland

Foreign object accidentally left in body during surgical and medical care during other surgical and medical care

+∞

11.7

T81.58

ICD-10 Finland

Foreign body accidentally left in body cavity or operation wound following a procedure

+∞

10.6

Y83

ICD-10 Finland

Surgical operation and other surgical procedures as the cause of abnormal reaction of the patient, or of later complication, without mention of misadventure at the time of the procedure

6.4

7.0

T81.4

ICD-10 Finland

Infection following a procedure, not elsewhere classified

5.0

6.5

JAL11

NOMESCO Finland

Laparoscopy and removal of foreign body

74.5

6.5

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

421

2.26

4.15

4.9

4.3

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

349

2.01

3.16

5.1

6.0

1.2

mmol/l

0.38

310

(3044640) Blood type and Crossmatch panel - Blood

263

2.05

3.14

3.8

2.4

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

138

2.27

3.10

1.3

2.8

0.8

e6/l

0.01

(3013115) Eosinophils [#/volume] in Blood

447

1.97

2.98

5.3

5.9

0.2

e9/l

0.24

402

(3013707) Erythrocyte sedimentation rate by Westergren method

666

2.14

2.83

4.2

12.1

10.7

mm/h

0.38

612

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

6.27

2.73

1.7

1.2

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

123

2.22

2.72

1.3

3.0

4.8

3.5

e6/l

0.17

(3011397) Hemoglobin [Presence] in Urine by Test strip

209

1.99

2.67

4.5

3.6

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

521

1.88

2.55

7.3

9.6

4.3

4.1

e9/l

0.37

462

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

197

1.97

2.51

1.6

2.1

0.8

mg/l

0.83

157

(3001604) Monocytes [#/volume] in Blood

430

1.81

2.39

5.4

5.7

0.6

e9/l

0.66

378

(3006315) Basophils [#/volume] in Blood

430

1.81

2.39

5.4

5.7

0.0

e9/l

0.15

381

(3015736) pH of Urine

369

1.78

2.27

5.2

3.4

—

(3023368) Bacteria identified in Blood by Culture

205

1.87

2.21

4.3

3.9

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

391

1.76

2.18

6.2

6.9

1.2

mmol/l

0.49

329

(3049717) Cytology report of Urine Cyto stain

3.37

2.14

3.4

2.4

—

(3035350) Ketones [Presence] in Urine by Test strip

469

1.75

2.13

5.1

3.5

0.0

estimate

—

(3009261) Glucose [Presence] in Urine by Test strip

471

1.73

2.08

5.0

3.5

0.0

estimate

—

(3022145) Colonoscopy Study observation

2.10

1.94

1.2

1.3

—

(3021589) Normoblasts [#/volume] in Blood

391

1.69

1.94

5.4

8.4

0.0

e9/l

0.71

323

(40761535) Cells panel - Urine sediment

2.22

1.91

5.9

3.6

—

(3021601) Nitrite [Presence] in Urine by Test strip

469

1.68

1.90

6.4

4.8

0.0

estimate

—

(3032080) INR in Blood by Coagulation assay

322

1.68

1.82

10.4

8.1

1.0

1.2

inr

2.94

104

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

2.58

1.81

13.2

6.6

—

(3042936) Bacteria identified in Isolate by Culture

113

1.94

1.75

3.7

1.9

—

(3050238) Crystals [Presence] in Synovial fluid by Light microscopy

3.98

1.73

1.0

1.2

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

838

2.04

1.72

12.7

11.8

85.9

82.7

ml/min/173m2

0.51

665

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

309

1.65

1.69

3.7

3.2

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

509

1.62

1.66

6.4

4.4

6.5

mmol/l

0.08

459

(3003338) MCHC [Mass/volume]

772

1.83

1.65

24.1

17.1

330.8

332.1

g/l

0.74

767

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

191

1.71

1.56

3.8

2.1

—

(3009542) Hematocrit [Volume Fraction] of Blood

822

1.90

1.56

18.1

13.5

39.8

40.0

0.10

618

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

325

1.59

1.52

3.7

3.6

32.5

24.5

ng/l

0.43

216

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

618

1.61

1.50

3.4

—

(3018095) Leukocytes [#/volume] in Urine

326

1.59

1.50

3.7

3.5

37.6

97.6

e6/l

1.20

229

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

693

1.66

1.48

3.7

4.1

14.7

14.6

pmol/l

0.11

624

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

898

2.12

1.46

20.2

13.1

28.9

21.2

mg/l

1.01

673

(3020427) Coagulation factor X inhibitor [Units/volume] in Platelet poor plasma by Coagulation assay

2.82

1.45

1.5

2.3

0.7

0.4

u/ml

—

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

831

1.81

1.37

4.5

4.8

1.8

mu/l

0.07

753

(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma

277

1.57

1.37

7.0

3.0

34.9

29.5

u/l

0.58

262

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

371

1.52

1.32

5.5

3.6

—

(3026008) Bacteria identified in Urine by Culture

297

1.55

1.32

4.9

2.9

—

(3003694) ABO and Rh group [Type] in Blood

263

1.55

1.27

1.7

1.6

—

(3037467) Urinalysis macro (dipstick) panel - Urine

646

1.52

1.18

6.7

4.2

—

(46236952) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)

1.92

1.14

1.5

3.7

148.3

68.2

ml/min/173m2

—

(36304419) Bacteria [Presence] in Urine

242

1.52

1.14

2.8

2.7

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

856

1.71

1.11

4.6

4.2

5.9

5.8

mmol/l

0.38

783

(3007853) Bacteria identified in Skin by Aerobe culture

106

1.72

1.11

2.8

1.5

—

(3029937) Albumin [Presence] in Urine by Test strip

253

1.50

1.09

5.7

3.8

0.0

estimate

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

835

1.65

1.08

3.8

3.6

1.2

mmol/l

0.20

767

(42870588) Differential panel, method unspecified - Blood

273

1.48

1.05

5.6

5.4

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.98

1.05

1.5

—

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

150

1.58

1.03

2.8

3.7

20.8

95.0

ng/l

1.09

100

(3044889) 12 lead EKG panel

573

1.44

1.03

3.7

3.6

—

(3000494) Fungus identified in Specimen by Culture

1.71

1.00

1.3

1.4

—

(3030467) Casts [#/volume] in Urine by Automated count

250

1.46

0.96

2.7

2.9

0.0

0.4

e6/l

3.52

188

(3022313) Gas panel - Capillary blood

2.06

0.88

2.0

3.5

—

(3019060) Gas panel - Arterial blood

1.83

0.87

1.6

3.9

—

(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma

0.50

0.83

1.4

1.6

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

332

1.38

0.82

1.8

113.0

94.5

pmol/l

1.33

172

(40758558) Short blood count panel - Blood

224

1.40

0.76

5.9

6.8

—

(3000991) Gas panel - Venous blood

1.73

0.75

6.1

9.1

—

(3023939) Sjogrens syndrome-A extractable nuclear Ab [Units/volume] in Serum

1.97

0.71

1.4

1.2

—

49.3

—

(3002582) Erythrocytes [#/volume] in Urine

275

1.34

0.67

3.1

3.0

90.7

269.5

e6/l

0.34

214

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

137

0.63

0.66

1.3

2.2

—

(3006999) Ribonucleoprotein extractable nuclear Ab [Units/volume] in Serum

1.70

0.62

1.4

1.3

—

11.3

—

(3023351) European house dust mite IgE Ab [Units/volume] in Serum

0.00

0.60

0.0

1.2

—

2.1

—

(4094501)

0.00

0.59

0.0

1.1

—

(40768797) Stomach Pathology biopsy report

108

1.45

0.57

1.2

—

(3025941) Bacteria identified in Stool by Culture

1.54

0.56

1.3

1.1

—

(40768804) Tissue Pathology biopsy report

378

1.28

0.55

2.2

1.9

—

(4010399)

1.47

0.54

1.4

1.3

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

137

1.38

0.51

4.6

4.8

22.3

22.1

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

183

1.33

0.50

1.3

1.2

52.6

33.6

iu/ml

—

(3012544) pH of Venous blood

1.50

0.50

3.5

4.2

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

152

0.69

0.48

1.8

2.3

—

(40761536) Microorganisms panel - Urine sediment

0.59

0.48

5.6

3.2

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.46

0.47

1.1

1.2

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.41

0.0

1.1

—

(3008401) Mugwort IgE Ab [Units/volume] in Serum

0.00

0.40

0.0

1.1

—

1.0

—

(3003888) Timothy IgE Ab [Units/volume] in Serum

0.00

0.40

0.0

1.1

—

2.7

—

(3037756) Immunofixation for Serum or Plasma

0.00

0.40

0.0

2.1

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

0.00

0.40

0.0

1.2

—

(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

0.00

0.39

0.0

1.6

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.39

0.0

1.1

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

121

0.72

0.37

1.2

1.5

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

0.64

0.37

1.4

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

1.39

0.33

1.0

1.5

—

(3008898) HLA-B27 [Presence]

1.32

0.33

1.2

1.1

—

(3013512) EKG study

236

0.81

0.30

4.6

3.8

—

(3022621) pH of Urine by Test strip

1.29

0.30

3.6

1.9

—

(3001019) Free T4 and TSH panel - Serum or Plasma

1.29

0.30

1.6

1.7

—

(40760892) CBC W Ordered Manual Differential panel - Blood

215

1.21

0.30

4.6

5.4

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

206

1.21

0.29

1.6

1.4

—

(3020682) Albumin/Creatinine [Ratio] in Urine

235

1.20

0.29

3.8

3.6

4.1

10.3

mg/mmol

1.28

134

(3017143) Hepatitis C virus Ab [Presence] in Serum

126

0.77

0.26

1.2

1.5

—

(36660697) Celiac disease serology panel - Serum

0.69

0.25

1.2

1.1

—

(3012336) Haptoglobin [Mass/volume] in Serum or Plasma

1.37

0.24

7.0

2.5

1.4

g/l

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

1.37

0.24

1.4

2.4

—

(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma

1.23

0.22

1.0

1.8

—

(3019832) Treponema pallidum Ab [Presence] in Serum

155

0.82

0.22

1.4

1.7

—

(21494755) Public health laboratory ask at order entry panel

1.26

0.22

1.1

1.2

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

1.20

0.22

3.2

2.7

0.8

0.7

—

(3005988) Vibrio sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.8

—

(21493466) Plesiomonas shigelloides DNA [Presence] in Stool by NAA with non-probe detection

0.00

0.21

0.0

1.8

—

(3024522) Salmonella sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.8

—

(3025468) Yersinia sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.8

—

(42868716) Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection

0.00

0.21

0.0

1.8

—

(3012568) Campylobacter sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.8

—

(3004915) Chlamydophila pneumoniae IgA Ab [Units/volume] in Serum

0.00

0.21

0.0

1.1

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.0

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.0

—

(40768806) Pleura Pathology biopsy report

0.00

0.21

0.0

1.4

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.0

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.5

—

(3012413) Glucose [Moles/volume] in Serum or Plasma --2 hours post meal

0.00

0.21

0.0

1.2

—

(3042111) Morphology [Interpretation] in Bone marrow Narrative

0.00

0.21

0.0

1.8

—

(3022806) Fractional oxyhemoglobin in Capillary blood

0.00

0.21

0.0

2.2

—

90.3

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

133

0.81

0.21

2.4

1.9

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.26

0.20

1.2

3.4

—

(3047826) Mullerian inhibiting substance [Mass/volume] in Serum or Plasma

0.00

0.20

0.0

1.1

—

3.6

—

(3039443) Prostate specific Ag panel - Serum or Plasma

0.00

0.20

0.0

1.5

—

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

186

1.16

0.18

1.5

1.2

0.8

9.9

u/ml

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

234

0.87

0.17

1.4

1.9

—

(3019225) pH of Specimen

1.12

0.16

3.1

5.7

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

1.23

0.16

2.5

3.5

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

227

1.13

0.16

1.3

1.2

0.7

2.7

u/ml

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

202

0.87

0.16

1.3

1.7

—

(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum

1.14

0.15

2.3

—

17.8

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

0.78

0.15

3.0

1.9

273.6

367.3

nmol/l

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

103

1.19

0.14

1.5

1.7

—

(3012516) Albumin [Mass/volume] in Urine

219

1.12

0.14

2.7

2.9

36.1

367.7

mg/l

0.56

135

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

219

0.89

0.12

1.4

1.6

—

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

261

1.10

0.11

1.9

2.2

106.1

157.6

u/l

0.79

248

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

1.14

0.10

3.2

2.7

1.1

1.3

—

(3000330) Specific gravity of Urine by Test strip

1.12

0.10

7.8

4.1

—

(3004529) Oxygen [Partial pressure] adjusted to patient's actual temperature in Venous blood

1.07

0.09

3.4

3.6

49.5

44.5

—

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

1.04

0.09

2.4

2.1

—

(3028026) IgM [Mass/volume] in Serum or Plasma

1.14

0.09

3.3

1.8

1.5

1.2

g/l

—

(3000492) Spirometry study

1.05

0.08

1.0

1.5

—

(4035726)

1.09

0.07

1.9

1.2

—

(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma

234

0.93

0.07

4.0

3.2

2142.6

886.7

ng/l

0.60

193

(1761868) Lipid panel - Serum or Plasma

335

0.94

0.07

2.7

2.6

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

0.86

0.07

1.5

1.9

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

0.85

0.07

1.5

1.8

—

(3015377) Calcium [Moles/volume] in Serum or Plasma

276

1.07

0.07

3.1

3.0

2.3

2.4

mmol/l

2.63

237

(3002256) Pathology report gross observation

109

1.11

0.06

1.1

1.2

—

(3041096) Erythrocytes [Presence] in Urine by Automated

280

0.95

0.03

5.1

3.0

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

104

1.06

0.01

14.1

8.8

—

(3004789) Transferrin [Mass/volume] in Serum or Plasma

106

0.94

0.01

7.4

2.4

2.1

2.4

g/l

—

(3022948) Iron [Moles/volume] in Serum or Plasma

114

1.06

0.01

6.3

2.4

13.2

13.1

umol/l

0.01

104

(3007164) IgA [Mass/volume] in Serum or Plasma

203

0.98

0.00

1.5

1.4

2.5

g/l

0.02

116

(3019497) Choriogonadotropin.beta subunit free [Moles/volume] in Serum or Plasma

0.00

0.0

1.3

—

(3027953) Aldolase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

1.8

—

4.6

—

(21493690) Lymphocyte T-cell and B-cell and Natural killer subsets panel - Blood

0.00

0.0

2.8

—

(3042975) Streptococcus sp identified in Isolate by Organism specific culture

0.00

0.0

1.0

—

(3036669) Protein S actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.0

1.0

—

95.3

—

(4281824)

0.00

0.0

1.0

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

0.0

2.0

—

(44790049)

0.00

0.0

1.9

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.5

—

(3048469) 10-Hydroxycarbazepine [Moles/volume] in Serum or Plasma

0.00

0.0

1.6

—

55.0

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3035320) C reactive protein [Mass/volume] in Body fluid

0.00

0.0

1.4

—

(3020650) Glucose [Presence] in Urine

0.00

0.0

1.2

—

(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method

0.00

0.0

1.3

—

(3050129) First trimester maternal screen panel - Serum or Plasma

0.98

0.00

1.8

1.5

—

(4146454)

0.00

0.0

2.5

—

(3010838) Calcium [Moles/time] in 24 hour Urine

0.00

0.0

1.0

—

(40771527) Human papilloma virus E6+E7 mRNA [Presence] in Cervix by NAA with probe detection

0.00

0.0

1.8

—

(3020717) Zinc [Moles/volume] in Serum or Plasma

0.00

0.0

1.0

—

13.5

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

0.0

1.9

—

(44790048)

0.00

0.0

1.9

—

(3033306) Mononuclear cells/100 leukocytes in Cerebral spinal fluid

0.00

0.0

1.2

—

(3017704) Immunofixation for Urine

0.00

0.0

1.0

—

(3017569) Oxygen content in Arterial blood

0.00

0.0

1.0

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.0

—

(3009595) Pneumocystis jiroveci DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.5

—

(3008364) Apolipoprotein A-I [Mass/volume] in Serum or Plasma

0.00

0.0

1.6

—

(3045142) Bone marrow Pathology biopsy report

0.00

0.0

1.3

—

(3021952) Alkaline phosphatase isoenzymes [Enzymatic activity/volume] in Serum or Plasma by Heat stability

0.00

0.0

1.2

—

(3028433) Virus identified in Specimen by Culture

0.00

0.0

1.3

—

(44806118)

0.00

0.0

1.9

—

(3035999) Lactate [Moles/volume] in Cerebral spinal fluid

0.00

0.0

1.4

—

1.7

—

(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.4

—

(3015183) Erythrocyte sedimentation rate

0.00

0.0

1.0

—

(44813793)

0.00

0.0

1.2

—

(21494434) Karyotype in Bone marrow

0.00

0.0

1.0

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.4

—

(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH

0.00

0.0

1.2

—

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

0.00

0.0

1.0

—

(3011831) Apolipoprotein B/Apolipoprotein A-I [Percentile]

0.00

0.0

1.6

—

(3051593) INR in Capillary blood by Coagulation assay

0.00

0.0

11.0

—

(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count

0.00

0.0

4.0

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3025018) Bordetella pertussis Ab [Titer] in Serum

0.00

0.0

1.2

—

(3005322) IgE [Units/volume] in Serum or Plasma

0.89

0.00

1.2

1.4

51.4

106.4

u/ml

—

(3000093) Morphology [Interpretation] in Blood Narrative

0.00

0.0

1.0

—

(3016914) Bacteria identified in Cerebral spinal fluid by Culture

0.00

0.0

1.4

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.0

—

(40766048) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.2

—

(3015076) Soybean IgE Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(44790047)

0.00

0.0

1.9

—

(3044927) Protein electrophoresis panel - Urine

0.00

0.0

1.0

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.0

—

(3035880) pH of Pleural fluid

0.00

0.0

1.0

—

(3029080) Hemoglobin [Entitic mass] in Reticulocytes

0.00

0.0

2.0

—

32.1

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.4

—

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.4

—

(3044242) Glucose [Moles/volume] in Arterial blood

0.00

0.0

1.4

—

(3005082) Progesterone [Moles/volume] in Serum or Plasma

0.00

0.0

1.3

—

35.1

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

0.86

0.00

1.0

1.5

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.0

—

(40763082) Lactate dehydrogenase [Enzymatic activity/volume] in Pleural fluid by Lactate to pyruvate reaction

0.00

0.0

1.1

—

202.1

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.4

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: VWXY20_FOREI_OBJECT_ACCIDENTALLY_LEFT_BODY_SURGI_MEDICAL_CARE – Foreign object accidentally left in body during surgical and medical care

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Foreign object accidentally left in body during surgical and medical care

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Foreign object accidentally left in body during surgical and medical care (VWXY20_FOREI_OBJECT_ACCIDENTALLY_LEFT_BODY_SURGI_MEDICAL_CARE)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints