Other helminthiases

AB1_HELMINTHIASES_NOS_WIDE

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	519972
1. Apply sex-specific rule None	519972
2. Check conditions None	519972
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Primary healthcare outpatient: ICD-10 — B83 Hospital discharge: ICD-10 — B83 Hospital discharge: ICD-9 — 128 Hospital discharge: ICD-8 — 1289 Cause of death: ICD-10 — B83 Cause of death: ICD-9 — 128 Cause of death: ICD-8 — 1289 3 out of 7 registries used, show all original rules.	88
4. Check minimum number of events None	88
5. Include endpoints None	88
6. Filter based on genotype QC (FinnGen only)	82

Control definitions (FinnGen only)

Control exclude: AB1_HELMINTIASES

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF13

NAME	AB1_HELMINTHIASES_NOS_WIDE
CONTROL_EXCLUDE	AB1_HELMINTIASES
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD	B83
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	B83
HD_ICD_9	128
HD_ICD_8	1289
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	B83
COD_ICD_9	128
COD_ICD_8	1289
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Other helminthiases based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	82	53	29
Unadjusted period prevalence (%)	0.02	0.02	0.01
Median age at first event (years)	52.66	52.68	52.64

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
88: Matched controls
880

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

B83.9

ICD-10 Finland

Helminthiasis, unspecified

+∞

47.2

B83.8

ICD-10 Finland

Other specified helminthiases

+∞

13.9

B83

ICD-10 Finland

Other helminthiases

+∞

8.5

12899

ICD-8 Finland

Other and unspecified helminthiasis, Unspecified

+∞

8.5

B83.1

ICD-10 Finland

Gnathostomiasis

+∞

7.4

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3003327) Ova and parasites identified in Stool by Light microscopy

22.46

39.62

3.6

1.4

—

(3007164) IgA [Mass/volume] in Serum or Plasma

149

3.56

7.57

2.6

1.4

2.80

2.43

g/l

0.20

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

162

3.07

5.91

1.4

1.3

0.58

1.55

u/ml

—

(3048689) Calprotectin [Mass/mass] in Stool

3.36

5.60

2.0

1.9

86.76

151.83

ug/g

0.54

(36660697) Celiac disease serology panel - Serum

3.70

5.29

1.0

1.2

—

(3034770) Mitochondria Ab [Titer] in Serum

8.96

4.68

1.3

1.4

—

(3022145) Colonoscopy Study observation

3.16

4.67

1.4

—

(3021589) Normoblasts [#/volume] in Blood

316

2.58

4.49

10.8

9.9

0.00

e9/l

-0.00

259

(3006315) Basophils [#/volume] in Blood

349

2.42

3.88

9.6

6.6

0.04

e9/l

0.30

308

(3001604) Monocytes [#/volume] in Blood

349

2.42

3.88

9.5

6.6

0.50

0.58

e9/l

2.18

308

(3019198) Lymphocytes [#/volume] in Blood

360

2.41

3.82

9.6

6.6

1.86

e9/l

0.01

326

(40760892) CBC W Ordered Manual Differential panel - Blood

326

2.34

3.70

8.9

7.4

—

(3013115) Eosinophils [#/volume] in Blood

357

2.33

3.58

9.6

7.4

0.22

0.18

e9/l

0.55

319

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

9.08

3.31

2.2

1.0

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

9.08

3.31

2.2

1.0

—

(40768797) Stomach Pathology biopsy report

2.68

3.31

1.2

1.3

—

(3016018) Differential panel - Cerebral spinal fluid

7.94

3.10

1.5

2.4

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

10.49

3.01

1.0

1.6

—

(3013327) Hepatitis A virus IgM Ab [Presence] in Serum

8.73

2.78

1.2

1.0

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

411

2.10

2.75

15.2

10.9

3.66

4.23

e9/l

1.04

364

(3025130) Human papilloma virus identified in Specimen

5.76

2.59

1.0

2.4

—

(3023410) Appearance of Cerebral spinal fluid

5.76

2.59

1.8

2.1

—

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

3.73

2.56

1.4

2.0

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

105

2.17

2.18

1.7

2.0

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

327

1.85

2.11

5.3

6.4

1.23

1.22

mmol/l

0.37

287

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

115

2.09

2.05

2.2

2.1

—

(3016417) Amylase.pancreatic [Enzymatic activity/volume] in Serum or Plasma

2.37

2.01

2.0

3.1

27.93

30.32

u/l

0.27

(40768443) Skin Pathology biopsy report

3.15

1.99

1.0

1.3

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

156

1.95

1.98

2.3

1.8

—

(3044290) Cell count panel - Cerebral spinal fluid

3.71

1.87

1.5

1.8

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

4.35

1.85

1.4

—

(40758558) Short blood count panel - Blood

186

1.83

1.80

14.0

8.5

—

(40768804) Tissue Pathology biopsy report

302

1.75

1.77

2.2

2.0

—

(3002179) Metamyelocytes/100 leukocytes in Blood

2.42

1.71

3.0

5.8

0.00

0.76

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

2.83

1.61

1.1

1.2

—

(42529406) Shigella sp [Presence] in Stool by Culture

2.83

1.61

1.1

1.2

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

2.83

1.61

1.1

1.2

—

(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum

3.14

1.61

1.3

1.2

—

(3017181) Myelocytes/100 leukocytes in Blood

2.24

1.57

3.6

5.4

0.17

0.65

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

2.23

1.45

3.2

3.6

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

2.33

1.42

1.0

—

(3018418) pH of Serum or Plasma

207

1.68

1.41

4.9

4.0

7.39

7.40

—

(3021440) Promyelocytes/100 leukocytes in Blood

2.19

1.39

3.8

5.6

0.00

0.05

—

(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma

1.90

1.36

2.8

0.55

0.71

ug/l

—

(3005322) IgE [Units/volume] in Serum or Plasma

2.22

1.35

1.2

1.3

358.03

683.02

u/ml

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

133

1.76

1.33

1.2

1.4

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

2.16

1.31

1.1

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

160

1.69

1.27

2.1

1.6

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

2.28

1.25

1.1

1.2

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

1.85

1.20

1.6

1.5

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

165

1.63

1.13

3.4

3.6

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

131

1.68

1.12

1.3

11.10

39.04

iu/ml

—

(3037467) Urinalysis macro (dipstick) panel - Urine

498

1.56

1.12

6.1

4.3

—

(3052851) Hemolysis interference index of Serum or Plasma

2.46

1.10

3.0

2.6

—

(3019832) Treponema pallidum Ab [Presence] in Serum

1.79

1.05

1.6

1.8

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

408

1.45

0.92

3.6

4.3

6.40

6.51

mmol/l

0.15

379

(3048929) Epstein Barr virus Ab [Presence] in Serum

2.14

0.91

1.3

—

(3015736) pH of Urine

293

1.45

0.90

4.4

3.5

5.90

5.58

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

531

1.48

0.90

3.7

3.3

—

(36304419) Bacteria [Presence] in Urine

210

1.49

0.89

4.1

2.8

—

(3018095) Leukocytes [#/volume] in Urine

266

1.45

0.88

4.7

3.9

165.62

59.64

e6/l

0.50

180

(3025941) Bacteria identified in Stool by Culture

1.81

0.85

1.3

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

150

1.53

0.83

1.6

2.0

0.81

0.95

mg/l

0.12

119

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

1.94

0.83

1.7

2.3

0.43

0.62

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

1.94

0.83

1.7

2.3

0.63

1.14

—

(3009261) Glucose [Presence] in Urine by Test strip

365

1.41

0.82

4.9

3.7

0.00

estimate

—

(3026008) Bacteria identified in Urine by Culture

214

1.45

0.81

2.4

3.1

—

(3030467) Casts [#/volume] in Urine by Automated count

214

1.45

0.81

4.1

2.9

0.01

0.35

e6/l

3.16

152

(3044889) 12 lead EKG panel

475

1.42

0.81

3.1

3.5

—

(3029713) Protein.monoclonal band 1 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.80

0.0

2.8

—

0.47

—

(3000492) Spirometry study

1.73

0.79

1.9

1.4

—

(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection

2.24

0.77

1.2

1.4

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

2.24

0.77

1.0

1.5

—

(3002582) Erythrocytes [#/volume] in Urine

235

1.42

0.76

3.9

3.0

122.96

63.19

e6/l

0.33

175

(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma

2.15

0.76

2.0

1.8

—

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

2.15

0.76

1.0

1.1

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

1.75

0.76

1.5

1.4

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.68

0.75

1.0

1.5

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

669

1.53

0.74

15.9

12.4

87.75

84.45

ml/min/173m2

0.63

538

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

2.06

0.74

1.0

1.3

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

119

1.53

0.74

3.2

3.7

17.23

20.71

—

(3017895) Helicobacter pylori Ab [Units/volume] in Serum

1.98

0.72

1.6

—

(3021601) Nitrite [Presence] in Urine by Test strip

363

1.36

0.69

6.7

5.2

0.00

estimate

—

(3003694) ABO and Rh group [Type] in Blood

202

1.41

0.68

1.5

—

(3019145) Choriogonadotropin.beta subunit free [Mass/volume] in Serum or Plasma

1.83

0.67

1.2

1.6

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

1.60

0.66

2.3

1.7

—

(1761868) Lipid panel - Serum or Plasma

252

1.36

0.62

3.7

2.5

—

(3029338) Protein.monoclonal band 3 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.61

0.0

3.0

—

0.00

—

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.61

0.0

3.0

—

0.00

—

(3007853) Bacteria identified in Skin by Aerobe culture

1.56

0.61

2.3

1.5

—

(3035797) Protein.monoclonal band 2 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.59

0.0

2.9

—

0.00

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

134

1.43

0.59

3.1

2.5

0.73

0.98

e6/l

0.36

(3021879) Hepatitis B virus core Ab [Presence] in Serum

1.58

0.57

1.3

1.5

—

(3019150) Specific gravity of Urine by Refractometry

156

0.66

0.56

5.0

3.6

—

1.01

—

(3035350) Ketones [Presence] in Urine by Test strip

362

1.31

0.55

4.9

3.6

0.00

estimate

—

(46236952) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (MDRD)

1.60

0.50

1.4

2.4

—

72.42

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

130

1.38

0.48

3.1

2.6

2.73

2.61

e6/l

0.03

(3003458) Phosphate [Moles/volume] in Serum or Plasma

1.46

0.47

4.8

6.0

1.01

1.07

mmol/l

0.38

(3016888) Borrelia burgdorferi IgG Ab [Units/volume] in Serum

1.46

0.47

1.1

1.3

—

41.90

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

1.47

0.45

3.6

6.4

104.82

103.95

mmol/l

0.29

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

272

1.28

0.45

2.2

2.0

110.44

94.08

pmol/l

0.59

130

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

123

1.37

0.44

2.3

1.7

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

732

1.42

0.43

18.5

13.2

17.60

24.15

mg/l

1.13

576

(40761536) Microorganisms panel - Urine sediment

1.42

0.43

6.8

3.9

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

105

0.64

0.42

1.1

2.0

—

(40766183) Gliadin peptide IgA Ab [Units/volume] in Serum by Immunoassay

0.00

0.41

0.0

1.2

—

5.18

—

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

0.00

0.40

0.0

1.5

—

(3019550) Sodium [Moles/volume] in Serum or Plasma

723

1.38

0.40

18.0

14.3

139.74

139.76

mmol/l

0.04

700

(3019225) pH of Specimen

1.40

0.40

5.3

3.3

—

(3000330) Specific gravity of Urine by Test strip

1.45

0.40

1.6

3.5

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

257

1.25

0.39

4.6

3.0

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

0.00

0.39

0.0

1.4

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

1.37

0.38

1.5

—

(3022217) INR in Platelet poor plasma by Coagulation assay

307

1.23

0.37

9.5

9.2

1.09

1.19

inr

—

(3023103) Potassium [Moles/volume] in Serum or Plasma

726

1.34

0.35

18.4

14.4

3.87

3.95

mmol/l

2.04

703

(3020779) Urea [Moles/volume] in Serum or Plasma

1.33

0.34

2.5

9.5

5.97

8.50

mmol/l

—

(3007461) Platelets [#/volume] in Blood

819

0.75

0.29

29.2

19.3

246.80

255.58

e9/l

0.62

795

(3024731) MCV [Entitic volume]

819

0.75

0.29

29.1

19.2

90.88

90.77

0.09

804

(3026361) Erythrocytes [#/volume] in Blood

819

0.75

0.29

29.2

19.3

4.46

4.50

e12/l

0.30

794

(3000963) Hemoglobin [Mass/volume] in Blood

819

0.75

0.29

29.4

19.4

135.06

135.62

g/l

0.13

804

(3012544) pH of Venous blood

1.32

0.29

2.0

4.9

—

(3002032) Base excess in Venous blood by calculation

1.32

0.29

1.7

4.8

0.61

2.56

mmol/l

—

(3035941) MCH [Entitic mass]

818

0.76

0.29

29.2

19.2

30.21

30.23

0.06

803

(3031040) Bacteria [#/volume] in Urine by Automated count

474

1.18

0.27

6.1

4.4

—

99.13

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

0.69

0.27

1.2

1.8

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

161

1.23

0.27

2.5

2.3

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.28

0.27

1.6

2.0

—

(3020682) Albumin/Creatinine [Ratio] in Urine

200

1.20

0.26

4.1

3.6

2.61

12.55

mg/mmol

1.98

119

(3044640) Blood type and Crossmatch panel - Blood

220

1.19

0.25

2.5

2.3

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.8

—

(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.6

—

(3018559) Microscopic observation [Identifier] in Buccal smear by Cyto stain

0.00

0.21

0.0

1.0

—

(3024666) Lithium [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

6.1

—

0.56

—

(3027544) Mycobacterium sp identified in Sputum by Organism specific culture

0.00

0.21

0.0

3.2

—

(3019897) Erythrocyte distribution width [Ratio] by Automated count

0.00

0.21

0.0

1.5

—

13.50

—

(4281824) Cell count and differential, peritoneal fluid

0.00

0.21

0.0

1.1

—

(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum

0.00

0.21

0.0

1.2

—

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

0.00

0.21

0.0

1.1

—

(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method

0.00

0.21

0.0

1.4

—

(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination

0.00

0.21

0.0

1.8

—

(3023150) Myeloperoxidase Ab [Units/volume] in Serum

0.00

0.21

0.0

1.2

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.5

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.5

—

(40761511) CBC panel - Blood by Automated count

771

0.82

0.20

14.2

11.3

—

(3012516) Albumin [Mass/volume] in Urine

186

1.17

0.19

3.6

3.2

16.77

73.45

mg/l

1.90

111

(3012095) Magnesium [Moles/volume] in Serum or Plasma

110

1.21

0.18

3.4

3.9

0.79

0.80

mmol/l

0.39

104

(3009508) Creatinine [Moles/volume] in Urine

206

1.16

0.18

3.7

2.9

8.69

7.61

mmol/l

0.48

172

(3010813) Leukocytes [#/volume] in Blood

819

0.86

0.18

28.9

19.3

6.11

6.68

e9/l

2.26

792

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

0.72

0.17

1.2

1.9

—

(4035726) Immunohistochemistry procedure

1.14

0.16

1.3

1.4

—

(3002256) Pathology report gross observation

1.23

0.16

1.3

1.2

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

327

1.12

0.15

2.9

2.5

—

(3041096) Erythrocytes [Presence] in Urine by Automated

200

1.13

0.14

5.0

3.3

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

250

0.89

0.13

4.9

3.2

121.69

38.29

ng/l

0.58

160

(3029937) Albumin [Presence] in Urine by Test strip

193

1.12

0.11

4.7

3.7

0.00

estimate

—

(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma

1.14

0.10

1.2

1.5

—

(3022621) pH of Urine by Test strip

1.07

0.09

2.2

2.1

—

(3014111) Lactate [Moles/volume] in Serum or Plasma

1.04

0.09

1.0

6.0

1.08

1.14

mmol/l

—

(3000991) Gas panel - Venous blood

1.12

0.09

1.5

7.6

—

(3013512) EKG study

195

0.90

0.09

5.2

3.6

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

1.04

0.07

1.4

2.2

1.71

1.38

—

(3042936) Bacteria identified in Isolate by Culture

107

0.93

0.02

2.1

1.8

—

(3023368) Bacteria identified in Blood by Culture

184

1.04

0.00

3.4

4.2

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

274

1.03

0.00

5.2

3.6

—

(3006923) Alanine aminotransferase [Enzymatic activity/volume] in Serum or Plasma

779

1.01

0.00

15.2

9.9

26.42

25.82

u/l

0.11

755

(3026989) Triiodothyronine (T3) Free [Moles/volume] in Serum or Plasma

0.94

0.00

5.8

3.5

4.84

4.49

pmol/l

—

(3000494) Fungus identified in Specimen by Culture

0.94

0.00

1.4

1.5

—

(3023419) Bacteria identified in Sputum by Culture

0.00

-0.00

0.0

4.9

—

(3012441) Differential panel - Pleural fluid

0.00

-0.00

0.0

1.7

—

(3049714) Procollagen type I.N-terminal propeptide [Mass/volume] in Serum

0.00

-0.00

0.0

2.6

—

84.14

—

(4146454) Self-monitoring of blood glucose

0.00

-0.00

0.0

3.8

—

(3036782) Glucose [Moles/volume] in Pleural fluid

0.00

-0.00

0.0

1.2

—

6.29

—

(3035880) pH of Pleural fluid

0.00

-0.00

0.0

1.2

—

(3030429) Borrelia sp DNA [Identifier] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay

0.00

-0.00

0.0

1.0

—

(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method

0.00

-0.00

0.0

1.1

—

(3033306) Mononuclear cells/100 leukocytes in Cerebral spinal fluid

0.00

-0.00

0.0

1.2

—

(3005570) Glucose [Moles/volume] in Urine

0.00

-0.00

0.0

4.0

—

(3044242) Glucose [Moles/volume] in Arterial blood

0.00

-0.00

0.0

2.4

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

-0.00

0.0

1.0

—

(3000093) Morphology [Interpretation] in Blood Narrative

0.00

-0.00

0.0

1.7

—

(3045142) Bone marrow Pathology biopsy report

0.00

-0.00

0.0

1.6

—

(21494890) Protein electrophoresis panel - 24 hour Urine

0.00

-0.00

0.0

1.2

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

-0.00

0.0

1.4

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

0.89

-0.00

2.2

1.6

—

(40768795) Lymph node Pathology biopsy report

0.00

-0.00

0.0

1.5

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

-0.00

0.0

1.0

—

(3009340) Metanephrine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.8

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.3

—

(3016436) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

6.6

—

231.20

—

(3011363) Streptococcus pneumoniae Ag [Presence] in Urine

0.00

-0.00

0.0

1.0

—

(40761535) Cells panel - Urine sediment

0.96

-0.00

1.4

3.2

—

(3002079) Sodium [Moles/time] in 24 hour Urine

0.00

-0.00

0.0

1.0

—

177.00

—

(21494755) Public health laboratory ask at order entry panel

0.96

-0.00

1.5

1.3

—

(3009595) Pneumocystis jiroveci DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.2

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.4

—

(3013727) Leukocytes other/100 leukocytes in Blood

0.00

-0.00

0.0

4.4

—

51.00

—

(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

1.2

—

2.90

—

(3027953) Aldolase [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.2

—

11.40

—

(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.8

—

(3011391) Calcitriol [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.4

—

(3003434) Protein [Mass/volume] in Pleural fluid

0.00

-0.00

0.0

1.5

—

31.89

—

(40770918) von Willebrand factor (vWf).activity actual/normal in Platelet poor plasma by Immunoassay

0.00

-0.00

0.0

3.2

—

97.80

—

(40763082) Lactate dehydrogenase [Enzymatic activity/volume] in Pleural fluid by Lactate to pyruvate reaction

0.00

-0.00

0.0

1.3

—

195.37

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

0.00

-0.00

0.0

2.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

-0.00

0.0

1.0

—

(3045788) Cell count panel - Pleural fluid

0.00

-0.00

0.0

1.6

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.6

—

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.6

—

(3036535) Thyroglobulin [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

5.8

—

(3025018) Bordetella pertussis Ab [Titer] in Serum

0.00

-0.00

0.0

1.0

—

(3022806) Fractional oxyhemoglobin in Capillary blood

0.00

-0.00

0.0

3.6

—

88.41

—

(3029080) Hemoglobin [Entitic mass] in Reticulocytes

0.00

-0.00

0.0

1.3

—

31.83

—

(40768806) Pleura Pathology biopsy report

0.00

-0.00

0.0

2.4

—

(3000012) Reticulocyte production index

0.00

-0.00

0.0

1.3

—

(3019497) Choriogonadotropin.beta subunit free [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.7

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

-0.00

0.0

1.4

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.6

—

(3017817) Protein [Mass] in Urine collected for unspecified duration

0.00

-0.00

0.0

2.3

—

(1617658) Protocol used for examination of sentinel lymph nodes

0.00

-0.00

0.0

1.1

—

(42868674) Cholesterol in HDL/Cholesterol.total [Molar ratio] in Serum or Plasma

1.00

-0.00

4.7

4.0

33.78

32.19

—

(44816752) ERBB2 gene copy number/nucleus in Tissue by FISH

0.00

-0.00

0.0

1.0

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.9

—

(3028334) Neisseria gonorrhoeae [Presence] in Specimen by Organism specific culture

0.00

-0.00

0.0

1.6

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

-0.00

0.0

1.2

—

(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection

0.00

-0.00

0.0

1.9

—

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: AB1_HELMINTHIASES_NOS_WIDE – Other helminthiases

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).

≡ Risteys

R13

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Other helminthiases

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Other helminthiases (AB1_HELMINTHIASES_NOS_WIDE)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints