Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

CD2_BENIGN_INTRATHORACIC_NOS

No definition available.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D15.7&, D15.9& Hospital discharge: ICD-9 — 212[8-9]\|2124 Hospital discharge: ICD-8 — 2124 Cause of death: ICD-10 — D15.7&, D15.9& Cause of death: ICD-9 — 212[8-9]\|2124 Cause of death: ICD-8 — 2124 2 out of 7 registries used, show all original rules.	93
4. Check minimum number of events None	93
5. Include endpoints None	93
6. Filter based on genotype QC (FinnGen only)	93

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2

NAME	CD2_BENIGN_INTRATHORACIC_NOS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D15[7\|9]
HD_ICD_9	212[8-9]\|2124
HD_ICD_8	2124
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D15[7\|9]
COD_ICD_9	212[8-9]\|2124
COD_ICD_8	2124
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9) based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	643	324	311
Only index persons	503	282	221
Unadjusted period prevalence (%)
Whole population	0.01	0.01	0.01
Only index persons	0.01	0.01	0.01
Median age at first event (years)
Whole population	53.15	54.00	51.91
Only index persons	50.65	52.73	48.01

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	93	45	48
Unadjusted period prevalence (%)	0.02	0.02	0.02
Median age at first event (years)	53.42	53.98	52.90

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

No data

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
87: Matched controls
871

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

D15.9

ICD-10 Finland

Benign neoplasm: Intrathoracic organ, unspecified

+∞

43.4

D15.7

ICD-10 Finland

Benign neoplasm: Other specified intrathoracic organs

+∞

37.2

R91

ICD-10 Finland

Abnormal findings on diagnostic imaging of lung

6.4

9.4

GAE06

NOMESCO Finland

Excision of lesion of chest wall

+∞

8.5

2129X

ICD-9 Finland

Benign neoplasm of respiratory and intrathoracic organs, Site unspecified

+∞

6.3

D15.1

ICD-10 Finland

Benign neoplasm: Heart

+∞

6.3

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3003434) Protein [Mass/volume] in Pleural fluid

12.69

3.81

2.5

1.6

37.8

25.2

g/l

—

(3044640) Blood type and Crossmatch panel - Blood

232

2.27

3.56

2.2

2.3

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

333

2.18

3.34

7.1

6.6

1.2

mmol/l

0.13

278

(3012441) Differential panel - Pleural fluid

10.46

3.01

2.8

1.6

—

(40768806) Pleura Pathology biopsy report

8.71

2.78

2.2

2.3

—

(3017732) Neutrophils [#/volume] in Blood

3.06

2.76

2.3

2.6

4.1

3.8

e9/l

0.24

(3032080) INR in Blood by Coagulation assay

298

1.99

2.67

11.1

8.4

1.2

1.3

inr

0.15

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

166

2.09

2.54

2.2

2.3

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

3.58

2.46

1.9

1.6

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

3.88

2.42

1.6

—

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

4.85

2.31

1.2

1.4

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

320

1.87

2.26

3.9

4.1

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

3.21

2.21

1.1

1.2

—

(3022313) Gas panel - Capillary blood

3.10

2.14

2.2

5.3

—

(40768804) Tissue Pathology biopsy report

298

1.82

2.10

2.2

1.9

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

2.22

2.06

5.8

7.0

1.1

1.0

mmol/l

1.31

(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma

285

1.78

1.95

2.2

2.4

76.9

75.4

nmol/l

0.15

247

(3020630) Protein [Mass/volume] in Serum or Plasma

2.45

1.90

1.7

3.3

66.0

66.8

g/l

0.14

(3021589) Normoblasts [#/volume] in Blood

312

1.70

1.71

13.6

8.8

0.0

e9/l

0.66

258

(40758558) Short blood count panel - Blood

173

1.79

1.65

7.3

7.7

—

(4035726)

2.04

1.55

1.1

1.3

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

2.58

1.53

6.0

3.8

25.6

24.6

mmol/l

—

(42870588) Differential panel, method unspecified - Blood

238

1.68

1.51

4.8

5.4

—

(3042936) Bacteria identified in Isolate by Culture

1.90

1.43

2.1

1.6

—

(3000492) Spirometry study

2.06

1.41

1.4

1.5

—

(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection

2.60

1.32

4.5

2.3

—

(3025941) Bacteria identified in Stool by Culture

2.16

1.31

1.2

1.4

—

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

1.94

1.29

4.6

4.2

2.4

93.8

ug/l

0.53

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

2.49

1.26

1.2

1.8

—

(3019198) Lymphocytes [#/volume] in Blood

361

1.54

1.23

5.8

5.6

1.7

1.8

e9/l

0.24

323

(3013115) Eosinophils [#/volume] in Blood

371

1.54

1.22

5.6

6.1

0.2

e9/l

0.29

330

(40768443) Skin Pathology biopsy report

2.40

1.20

1.2

—

(3003327) Ova and parasites identified in Stool by Light microscopy

2.58

1.16

3.2

1.2

—

(3006315) Basophils [#/volume] in Blood

357

1.50

1.12

5.6

5.5

0.0

e9/l

0.23

314

(3001604) Monocytes [#/volume] in Blood

357

1.50

1.12

5.6

5.5

0.6

e9/l

0.10

314

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

1.88

1.06

3.5

3.7

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

109

1.68

1.02

1.9

1.6

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

2.08

1.02

1.1

1.8

—

(3044889) 12 lead EKG panel

502

1.48

0.99

4.9

4.0

—

(4010399)

1.88

0.99

1.5

1.3

—

(3019225) pH of Specimen

1.85

0.95

3.6

5.1

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

2.22

0.93

1.2

2.2

—

(3019309) Folate [Moles/volume] in Red Blood Cells

130

1.58

0.90

2.1

1.7

1282.1

1243.5

nmol/l

0.07

100

(3023368) Bacteria identified in Blood by Culture

203

1.47

0.84

3.9

4.1

—

(3002256) Pathology report gross observation

1.65

0.84

1.2

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

107

1.60

0.83

1.4

1.9

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

443

1.39

0.80

2.8

2.7

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.61

0.72

1.7

1.6

—

(3018418) pH of Serum or Plasma

209

1.41

0.72

6.0

3.6

7.4

—

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

209

1.41

0.72

1.9

2.1

162.5

199.4

u/l

0.30

200

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

293

1.37

0.71

4.8

4.1

16.9

56.1

ng/l

1.65

207

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

581

1.39

0.71

8.7

7.4

77.5

79.9

u/l

0.24

541

(3005322) IgE [Units/volume] in Serum or Plasma

1.68

0.68

1.9

1.2

282.0

153.0

u/ml

—

(40760892) CBC W Ordered Manual Differential panel - Blood

159

1.41

0.62

5.0

—

(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma

1.62

0.62

4.3

2.6

132.6

133.5

ng/l

—

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

1.59

0.61

9.4

3.4

1.2

mmol/l

—

(3051387) C reactive protein [Mass/volume] in Capillary blood

0.00

0.61

0.0

6.3

—

32.5

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.53

0.59

1.4

1.6

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

1.47

0.54

1.4

1.7

—

(40761511) CBC panel - Blood by Automated count

766

0.73

0.53

20.8

13.5

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

119

0.64

0.49

1.4

—

(3026361) Erythrocytes [#/volume] in Blood

817

0.72

0.46

29.0

20.6

4.4

4.5

e12/l

0.96

790

(3010813) Leukocytes [#/volume] in Blood

817

0.72

0.46

29.1

20.5

6.8

6.7

e9/l

0.22

792

(3024731) MCV [Entitic volume]

816

0.73

0.44

28.9

20.5

90.3

90.9

0.70

804

(3035941) MCH [Entitic mass]

816

0.73

0.44

28.8

20.5

29.8

30.3

1.57

804

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

491

0.80

0.43

3.7

3.0

30.9

52.3

u/l

4.30

468

(40761536) Microorganisms panel - Urine sediment

1.44

0.43

7.1

3.4

—

(3007461) Platelets [#/volume] in Blood

815

0.73

0.42

29.1

20.6

251.0

248.2

e9/l

0.15

791

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.41

0.0

1.3

—

3.7

—

(3017044) Thyrotropin receptor Ab [Units/volume] in Serum

0.00

0.41

0.0

1.8

—

3.4

—

(3015816) F5 gene p.Arg506Gln [Presence] in Blood or Tissue by Molecular genetics method

0.00

0.41

0.0

1.2

—

(44816559) Phosphatidylethanol [Mass/volume] in Blood

0.00

0.41

0.0

1.2

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

0.40

0.0

1.4

—

0.2

—

(3052851) Hemolysis interference index of Serum or Plasma

0.00

0.40

0.0

2.8

—

(3048689) Calprotectin [Mass/mass] in Stool

1.40

0.40

1.8

2.1

126.6

153.5

ug/g

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

711

0.79

0.39

4.6

4.4

1.4

1.5

mmol/l

0.16

645

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

1.41

0.39

9.6

7.8

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

277

1.24

0.38

5.2

4.1

—

(3029937) Albumin [Presence] in Urine by Test strip

201

1.26

0.37

5.4

4.0

0.0

estimate

—

(3026008) Bacteria identified in Urine by Culture

220

1.25

0.37

3.5

3.2

—

(3003694) ABO and Rh group [Type] in Blood

174

1.27

0.35

1.4

1.3

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

1.39

0.34

1.9

1.6

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

216

0.79

0.33

2.7

4.7

22.0

21.2

—

105

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

706

0.82

0.32

4.8

4.7

5.8

6.0

mmol/l

0.51

646

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.32

0.31

1.3

1.9

—

(3005719) IgG [Mass/volume] in Serum or Plasma

1.32

0.31

3.0

2.7

9.4

9.7

g/l

—

(3013512) EKG study

215

1.22

0.31

5.3

4.1

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

1.30

0.25

1.7

1.5

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

691

0.85

0.25

4.0

1.2

1.3

mmol/l

0.20

627

(3021601) Nitrite [Presence] in Urine by Test strip

347

1.16

0.24

6.2

5.4

0.0

estimate

0.00

(3012516) Albumin [Mass/volume] in Urine

192

1.19

0.23

3.8

3.1

23.2

47.5

mg/l

0.80

116

(3019832) Treponema pallidum Ab [Presence] in Serum

1.23

0.22

1.4

1.6

—

(3022621) pH of Urine by Test strip

1.20

0.22

2.4

2.3

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.20

0.22

4.6

1.0

1.5

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.20

0.22

4.6

5.3

0.7

—

(3008757) Leukocyte morphology finding [Identifier] in Blood

0.00

0.21

0.0

4.3

—

(3026389) Candida sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.3

—

(3020629) Protein S Free Ag actual/normal in Platelet poor plasma by Immunoassay

0.00

0.21

0.0

1.3

—

89.5

—

(40768795) Lymph node Pathology biopsy report

0.00

0.21

0.0

1.1

—

(3023150) Myeloperoxidase Ab [Units/volume] in Serum

0.00

0.21

0.0

1.2

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

0.21

0.0

3.4

—

(3029634) Reagin Ab [Titer] in Serum by VDRL

0.00

0.21

0.0

2.1

—

(3019230) Fractional oxyhemoglobin in Venous blood

0.00

0.21

0.0

2.0

—

70.4

—

(3027544) Mycobacterium sp identified in Sputum by Organism specific culture

0.00

0.21

0.0

4.3

—

(4146454)

0.00

0.21

0.0

1.6

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.7

—

(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.3

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.7

—

(3017354) Segmented neutrophils/100 leukocytes in Blood

0.00

0.21

0.0

2.9

—

53.0

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

281

1.15

0.21

1.8

1.9

88.6

91.9

pmol/l

0.15

133

(4268621)

0.00

0.21

0.0

2.3

—

(3024928) Oxygen saturation in Venous blood

0.00

0.21

0.0

2.4

—

(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination

0.00

0.21

0.0

1.9

—

(4306422)

0.00

0.21

0.0

1.2

—

(3020682) Albumin/Creatinine [Ratio] in Urine

204

1.17

0.20

5.4

3.8

1.8

5.8

mg/mmol

1.55

126

(3020287) Protein C actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.20

0.0

1.4

—

111.2

—

(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method

0.00

0.20

0.0

1.1

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.6

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.6

—

(3009261) Glucose [Presence] in Urine by Test strip

351

1.14

0.20

4.8

4.0

0.0

estimate

0.00

(3004588) Protein electrophoresis panel - Serum or Plasma

1.19

0.20

1.3

2.9

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

421

1.13

0.19

8.9

9.8

4.1

4.0

e9/l

0.11

364

(3041096) Erythrocytes [Presence] in Urine by Automated

205

1.16

0.19

4.0

3.6

—

(3019550) Sodium [Moles/volume] in Serum or Plasma

747

1.18

0.18

21.3

16.1

139.9

139.7

mmol/l

0.24

728

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

111

1.20

0.17

1.2

1.4

34.2

19.8

u/ml

—

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

713

0.88

0.17

4.7

4.5

4.6

mmol/l

0.16

654

(3023103) Potassium [Moles/volume] in Serum or Plasma

749

1.16

0.16

21.5

16.2

3.9

4.0

mmol/l

0.66

730

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.11

0.15

12.9

7.3

—

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

248

1.13

0.15

2.5

2.2

56.5

56.6

u/l

0.01

231

(3002385) Erythrocyte distribution width [Ratio]

607

1.12

0.15

21.6

17.0

14.1

13.7

0.73

597

(40768797) Stomach Pathology biopsy report

103

1.19

0.14

1.3

1.2

—

(3000494) Fungus identified in Specimen by Culture

1.19

0.14

1.3

1.4

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

691

1.12

0.12

16.6

13.3

80.9

80.7

ml/min/173m2

0.03

549

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

153

1.14

0.12

1.1

1.3

0.8

1.1

u/ml

—

(3037467) Urinalysis macro (dipstick) panel - Urine

500

0.92

0.11

4.9

4.0

—

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

144

1.13

0.11

2.8

2.9

2.5

mmol/l

0.51

124

(1761868) Lipid panel - Serum or Plasma

252

1.10

0.11

2.7

3.0

—

(3035350) Ketones [Presence] in Urine by Test strip

351

1.09

0.11

4.9

3.9

0.0

estimate

0.00

(3031040) Bacteria [#/volume] in Urine by Automated count

461

1.09

0.10

4.8

4.2

—

45.7

—

(3000991) Gas panel - Venous blood

1.04

0.08

4.3

5.3

—

(3022145) Colonoscopy Study observation

0.81

0.08

1.5

1.2

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

1.07

0.07

1.5

1.7

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

1.07

0.07

1.5

1.6

—

(3027945) Reticulocytes/100 erythrocytes in Blood

1.14

0.07

3.8

3.2

1.7

—

(3015736) pH of Urine

273

0.93

0.06

4.3

3.8

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

732

0.93

0.06

5.0

2.6

2.7

mmol/l

0.41

667

(3018095) Leukocytes [#/volume] in Urine

278

1.06

0.05

3.3

3.4

520.7

74.6

e6/l

0.65

198

(36304419) Bacteria [Presence] in Urine

199

1.07

0.05

3.0

2.6

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

123

1.07

0.02

1.2

1.3

115.2

35.9

iu/ml

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

257

0.96

0.01

3.9

3.0

—

(3004410) Hemoglobin A1c/Hemoglobin.total in Blood

676

0.97

0.00

5.8

5.9

38.6

40.0

mmol/mol

0.67

633

(3009542) Hematocrit [Volume Fraction] of Blood

654

1.03

0.00

13.7

15.0

39.6

40.5

0.69

480

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

108

1.02

0.00

4.6

2.6

18.4

21.5

0.66

(3011397) Hemoglobin [Presence] in Urine by Test strip

163

0.98

0.00

5.5

3.7

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

733

0.98

0.00

19.9

14.3

15.3

23.4

mg/l

3.10

579

(3007164) IgA [Mass/volume] in Serum or Plasma

144

0.97

0.00

1.5

1.4

2.1

2.4

g/l

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

104

0.96

0.00

1.6

1.3

—

(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.0

1.0

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.4

—

(46235128) Lupus anticoagulant aPTT and dRVVT screening panel W Reflex

0.00

0.0

1.2

—

(3016436) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

3.2

—

241.0

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.4

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

0.0

1.0

—

(3019897) Erythrocyte distribution width [Ratio] by Automated count

0.00

0.0

1.4

—

13.4

—

(37020957) Sapovirus genogroups I+II+IV+V RNA [Presence] in Stool by NAA with probe detection

0.00

0.0

2.0

—

(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

4.6

—

(3028679) Herpes simplex virus Ab [Presence] in Serum

0.00

0.0

1.0

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.4

—

(37020445) Astrovirus RNA [Presence] in Stool by NAA with probe detection

0.00

0.0

2.0

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.4

—

(3034426) Prothrombin time (PT)

0.00

0.0

1.4

—

(40757349) CD3+CD4+ (T4 helper) cells/CD3+CD8+ (T8 suppressor cells) cells [# Ratio] in Blood

0.00

0.0

1.6

—

(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.4

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.4

—

(3000012) Reticulocyte production index

0.00

0.0

3.0

—

(3047826) Mullerian inhibiting substance [Mass/volume] in Serum or Plasma

0.00

0.0

1.0

—

3.4

—

(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.4

—

(3019977) pH of Arterial blood

0.00

0.0

4.6

—

(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

4.6

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

0.97

0.00

1.9

2.0

299.6

370.1

nmol/l

—

(42869457) Rotavirus RNA [Identifier] in Stool by NAA with probe detection

0.00

0.0

2.0

—

(42870308) Desmosome IgG Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.0

—

(40761535) Cells panel - Urine sediment

0.92

0.00

7.4

4.0

—

(4027681)

0.00

0.0

1.0

—

(37021247) Adenovirus 40+41 DNA [Presence] in Stool by NAA with probe detection

0.00

0.0

2.0

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

0.0

1.0

—

(3034988) Calcium [Moles/volume] in Capillary blood

0.00

0.0

1.8

—

1.2

—

(3036535) Thyroglobulin [Mass/volume] in Serum or Plasma

0.00

0.0

5.2

—

(3019060) Gas panel - Arterial blood

0.87

0.00

6.2

3.7

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.5

—

(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid

0.00

0.0

1.0

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

0.0

1.8

—

(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum

0.00

0.0

1.1

—

(3007853) Bacteria identified in Skin by Aerobe culture

0.99

0.00

1.5

1.6

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.0

—

(3012544) pH of Venous blood

1.02

0.00

1.3

4.2

—

(3009340) Metanephrine [Moles/volume] in Serum or Plasma

0.00

0.0

1.3

—

(40760847) Basement membrane Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.3

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.5

—

(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid

0.00

0.0

1.0

—

(3044242) Glucose [Moles/volume] in Arterial blood

0.00

0.0

2.0

—

(3014271) Vancomycin [Susceptibility]

0.00

0.0

2.2

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.0

1.0

—

(3051611) Lipemic interference index of Serum or Plasma

0.00

0.0

3.2

—

(3049539) Genetic diseases [Identifier] in Blood or Tissue by FISH Nominal

0.00

0.0

1.1

—

(3023410) Appearance of Cerebral spinal fluid

0.00

0.0

1.2

—

(3017817) Protein [Mass] in Urine collected for unspecified duration

0.00

0.0

2.0

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.00

0.0

1.2

—

(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.1

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

780

1.00

0.00

21.9

16.4

82.9

77.5

umol/l

0.35

780

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.0

1.2

—

(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection

0.00

0.0

2.2

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.5

—

(3010503) CD19 cells [#/volume] in Blood

0.00

0.0

1.8

—

0.2

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.4

—

(3028026) IgM [Mass/volume] in Serum or Plasma

1.02

0.00

2.2

1.6

0.9

1.1

g/l

—

(21492711) Cytomegalovirus IgG Ab avidity [Presence] in Serum or Plasma by Immunoassay

0.00

0.0

1.1

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

0.90

0.00

1.7

1.8

1.3

1.5

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.5

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

0.00

0.0

1.0

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.5

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

0.0

1.5

—

(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture

0.00

0.0

1.0

—

(3030408) 3-Methoxytyramine [Moles/volume] in Serum or Plasma

0.00

0.0

1.3

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.1

—

(3014326) Insulin-like growth factor-I [Moles/volume] in Serum or Plasma

0.00

0.0

2.0

—

26.3

—

(3037522) Nuclear Ab [Titer] in Serum

0.93

0.00

1.6

1.3

—

475.0

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

0.0

2.7

—

(3045142) Bone marrow Pathology biopsy report

0.00

0.0

1.3

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.0

1.5

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.0

—

Mortality – FinRegistry

↥

Association

Association between endpoint CD2_BENIGN_INTRATHORACIC_NOS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_INTRATHORACIC_NOS.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

↥

Index endpoint: CD2_BENIGN_INTRATHORACIC_NOS – Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

rg [CI]

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints