Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

CD2_BENIGN_INTRATHORACIC_NOS_EXALLC

No definition available.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data
1. Apply sex-specific rule None	-
2. Check conditions None
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D15.7&, D15.9& Hospital discharge: ICD-9 — 212[8-9]\|2124 Hospital discharge: ICD-8 — 2124 Cause of death: ICD-10 — D15.7&, D15.9& Cause of death: ICD-9 — 212[8-9]\|2124 Cause of death: ICD-8 — 2124 2 out of 7 registries used, show all original rules.	-
4. Check minimum number of events None	-
5. Include endpoints None	-
6. Filter based on genotype QC (FinnGen only) None	-

Control definitions (FinnGen only)

Control exclude: C3_CANCER, C3_CANCER_WIDE

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2

NAME	CD2_BENIGN_INTRATHORACIC_NOS_EXALLC
CONTROL_EXCLUDE	C3_CANCER\|C3_CANCER_WIDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D15[7\|9]
HD_ICD_9	212[8-9]\|2124
HD_ICD_8	2124
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D15[7\|9]
COD_ICD_9	212[8-9]\|2124
COD_ICD_8	2124
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9) based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

Case counts by codes

↥

FinnGen case counts by registry codes:

No upset plot: script not run.

No upset table: script not run.

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	93	45	48
Unadjusted period prevalence (%)	0.02	0.02	0.02
Median age at first event (years)	53.42	53.98	52.90

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
87: Matched controls
870

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

D15.9

ICD-10 Finland

Benign neoplasm: Intrathoracic organ, unspecified

+∞

43.4

D15.7

ICD-10 Finland

Benign neoplasm: Other specified intrathoracic organs

+∞

37.2

R91

ICD-10 Finland

Abnormal findings on diagnostic imaging of lung

10.1

12.6

WX408

NOMESCO Finland

General anesthesy, balanced

4.7

8.5

GAE06

NOMESCO Finland

Excision of lesion of chest wall

+∞

8.5

GD1AA

NOMESCO Finland

Thorax X-ray examination

3.7

7.6

203

130

Kela drug reimbursment

Malignant tumour

+∞

7.4

UGC12

NOMESCO Finland

Flexible bronchoscopy

7.0

6.3

D15.1

ICD-10 Finland

Benign neoplasm: Heart

+∞

6.3

2129X

ICD-9 Finland

Benign neoplasm of respiratory and intrathoracic organs, Site unspecified

+∞

6.3

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(4035726)

7.26

9.31

1.1

—

(3044640) Blood type and Crossmatch panel - Blood

175

3.26

7.00

2.2

2.0

—

(3003785) Carcinoembryonic Ag [Mass/volume] in Serum or Plasma

5.14

6.22

4.6

1.3

2.4

11.7

ug/l

0.52

(3013742) Prealbumin [Mass/volume] in Serum or Plasma

4.28

5.33

3.1

1.7

0.2

g/l

0.04

(40768804) Tissue Pathology biopsy report

223

2.73

5.25

2.2

1.5

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

130

2.79

4.60

2.2

1.8

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

306

2.48

4.42

7.1

5.2

1.2

mmol/l

0.13

267

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

266

2.44

4.29

3.9

3.7

—

(3032080) INR in Blood by Coagulation assay

258

2.44

4.27

11.1

9.2

1.2

1.3

inr

0.14

(40769539) Bacteria identified based on 16S rRNA gene [Identifier] in Specimen by Sequencing

9.05

3.31

1.2

1.7

—

(3017732) Neutrophils [#/volume] in Blood

3.13

2.87

2.3

3.1

4.1

3.8

e9/l

0.23

(3003458) Phosphate [Moles/volume] in Serum or Plasma

2.59

2.78

5.8

5.2

1.1

1.0

mmol/l

1.36

(3022313) Gas panel - Capillary blood

4.04

2.75

2.2

6.3

—

(40758558) Short blood count panel - Blood

146

2.20

2.75

7.3

5.1

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

4.50

2.74

1.6

1.7

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

3.87

2.65

1.9

1.6

—

(3002256) Pathology report gross observation

2.71

2.59

1.2

1.0

—

(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma

267

1.96

2.52

2.2

2.3

76.9

76.5

nmol/l

0.04

230

(3014162) Mycobacterium tuberculosis DNA [Presence] in Specimen by NAA with probe detection

4.85

2.31

4.5

2.6

—

(3042936) Bacteria identified in Isolate by Culture

2.28

2.18

2.1

1.5

—

(3021589) Normoblasts [#/volume] in Blood

297

1.83

2.13

13.6

7.9

0.0

e9/l

0.78

240

(3020630) Protein [Mass/volume] in Serum or Plasma

2.50

1.97

1.8

1.6

66.0

68.2

g/l

0.48

(42870588) Differential panel, method unspecified - Blood

224

1.82

1.93

4.8

5.6

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

2.66

1.79

6.0

3.5

25.6

25.1

mmol/l

—

(3025941) Bacteria identified in Stool by Culture

2.66

1.79

1.2

1.3

—

(3023368) Bacteria identified in Blood by Culture

171

1.82

1.71

3.9

3.5

—

(3019225) pH of Specimen

2.31

1.57

3.6

4.5

—

(3019198) Lymphocytes [#/volume] in Blood

349

1.63

1.49

5.8

5.3

1.7

1.9

e9/l

0.49

306

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

539

1.68

1.47

8.7

5.0

77.5

74.5

u/l

0.34

492

(3000492) Spirometry study

2.09

1.47

1.4

—

(3022250) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma by Lactate to pyruvate reaction

2.09

1.47

2.8

3.1

254.5

229.8

u/l

0.27

(3013115) Eosinophils [#/volume] in Blood

360

1.62

1.46

5.6

5.7

0.2

e9/l

0.34

314

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

2.15

1.45

3.5

3.3

—

(3001604) Monocytes [#/volume] in Blood

345

1.59

1.37

5.6

5.2

0.6

e9/l

0.20

300

(3006315) Basophils [#/volume] in Blood

346

1.58

1.35

5.6

5.2

0.0

e9/l

0.43

301

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

2.60

1.32

1.2

1.6

—

(3018418) pH of Serum or Plasma

186

1.64

1.25

6.0

2.7

7.4

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

1.83

1.23

1.4

1.7

—

(3003327) Ova and parasites identified in Stool by Light microscopy

2.72

1.23

3.2

1.3

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

2.40

1.20

1.2

1.7

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

104

1.78

1.19

1.9

1.5

—

(4010399)

2.02

1.18

1.5

1.3

—

(3009343) pH of Capillary blood

2.09

1.15

2.5

5.5

—

7.4

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

2.21

1.08

1.1

1.7

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

2.01

1.06

1.7

1.2

—

(40768443) Skin Pathology biopsy report

2.30

0.95

1.2

—

(3044889) 12 lead EKG panel

506

1.45

0.93

4.9

3.8

—

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

1.99

0.91

9.4

2.7

1.2

mmol/l

—

(3019309) Folate [Moles/volume] in Red Blood Cells

130

1.58

0.90

2.1

1.7

1282.2

1120.6

nmol/l

0.36

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

284

1.44

0.88

4.8

3.8

16.9

43.8

ng/l

1.60

197

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

440

1.41

0.85

2.8

2.6

—

(40760892) CBC W Ordered Manual Differential panel - Blood

149

1.53

0.85

5.0

4.5

—

(3003694) ABO and Rh group [Type] in Blood

150

1.52

0.83

1.4

1.3

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.77

0.78

1.1

1.2

—

(3048689) Calprotectin [Mass/mass] in Stool

1.64

0.73

1.8

126.6

118.5

ug/g

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

381

1.35

0.69

8.9

6.3

4.1

e9/l

0.06

327

(3026008) Bacteria identified in Urine by Culture

201

1.41

0.69

3.5

3.0

—

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

211

1.39

0.68

1.9

2.1

162.5

160.1

u/l

0.02

195

(40761511) CBC panel - Blood by Automated count

770

0.71

0.60

20.8

10.9

—

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

0.60

0.0

1.4

—

0.2

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

724

0.73

0.60

4.6

4.5

1.4

1.5

mmol/l

0.19

664

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

0.00

0.59

0.0

1.3

—

1.2

—

(3029937) Albumin [Presence] in Urine by Test strip

190

1.35

0.55

5.4

3.4

0.0

estimate

—

(3010813) Leukocytes [#/volume] in Blood

821

0.69

0.55

29.1

16.7

6.8

6.6

e9/l

0.36

791

(3026361) Erythrocytes [#/volume] in Blood

821

0.69

0.55

29.0

16.7

4.4

4.6

e12/l

1.73

789

(3017143) Hepatitis C virus Ab [Presence] in Serum

1.58

0.55

1.9

1.5

—

(3013512) EKG study

200

1.34

0.54

5.3

3.7

—

(3035941) MCH [Entitic mass]

820

0.70

0.53

28.8

16.6

29.8

30.3

1.74

802

(3024731) MCV [Entitic volume]

820

0.70

0.53

28.9

16.7

90.3

90.8

0.54

802

(3020059) Calcium [Moles/volume] corrected for albumin in Serum or Plasma

119

1.42

0.52

2.8

1.9

2.5

2.4

mmol/l

1.28

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

1.43

0.52

1.4

1.6

—

(3007461) Platelets [#/volume] in Blood

819

0.70

0.50

29.1

16.7

251.0

246.9

e9/l

0.23

791

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

117

0.65

0.49

1.4

1.5

—

(3005719) IgG [Mass/volume] in Serum or Plasma

1.56

0.49

3.0

2.0

9.4

10.4

g/l

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

717

0.77

0.48

4.8

4.6

5.8

6.0

mmol/l

0.78

648

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

272

1.27

0.45

5.2

3.5

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.50

0.44

1.4

—

(40761536) Microorganisms panel - Urine sediment

1.47

0.44

7.1

2.8

—

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

490

0.81

0.42

3.7

2.9

30.9

49.1

u/l

3.31

459

(3008037) Lactate [Moles/volume] in Venous blood

0.00

0.41

0.0

2.5

—

1.4

—

(3017044) Thyrotropin receptor Ab [Units/volume] in Serum

0.00

0.41

0.0

1.9

—

7.8

—

(3052851) Hemolysis interference index of Serum or Plasma

0.00

0.41

0.0

2.7

—

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

703

0.79

0.41

4.0

1.2

1.3

mmol/l

0.20

642

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.50

0.41

4.6

3.9

0.7

0.8

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.50

0.41

4.6

4.0

1.0

1.5

—

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

1.50

0.41

9.6

5.7

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

1.43

0.40

1.7

1.4

—

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

228

1.26

0.39

2.5

1.8

56.5

56.6

u/l

0.00

209

(44816559) Phosphatidylethanol [Mass/volume] in Blood

0.00

0.39

0.0

1.2

—

(3019832) Treponema pallidum Ab [Presence] in Serum

1.41

0.39

1.4

1.5

—

(3000494) Fungus identified in Specimen by Culture

1.39

0.36

1.3

1.4

—

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

727

0.80

0.34

4.7

4.5

4.6

mmol/l

0.27

670

(3041096) Erythrocytes [Presence] in Urine by Automated

194

1.25

0.34

4.0

3.2

—

(3011960) Natriuretic peptide B [Mass/volume] in Serum or Plasma

1.29

0.29

4.2

2.8

132.6

145.7

ng/l

—

(3021601) Nitrite [Presence] in Urine by Test strip

343

1.18

0.28

6.2

4.8

0.0

estimate

0.00

(3018095) Leukocytes [#/volume] in Urine

256

1.19

0.28

3.3

3.1

520.7

48.1

e6/l

0.71

166

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

212

0.81

0.28

2.7

3.5

22.0

23.8

—

(40768797) Stomach Pathology biopsy report

1.29

0.26

1.3

1.1

—

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

1.28

0.24

4.6

2.5

18.4

25.7

2.02

(3022621) pH of Urine by Test strip

1.33

0.23

2.4

2.6

—

(3028026) IgM [Mass/volume] in Serum or Plasma

1.33

0.23

2.2

1.3

0.9

1.2

g/l

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

680

1.19

0.23

16.6

10.1

80.9

79.7

ml/min/173m2

0.18

531

(3009261) Glucose [Presence] in Urine by Test strip

348

1.16

0.23

4.8

3.5

0.0

estimate

0.00

(36304419) Bacteria [Presence] in Urine

183

1.19

0.23

3.0

2.4

—

(4306422)

0.00

0.21

0.0

1.2

—

(3020287) Protein C actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.21

0.0

1.2

—

117.5

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

0.00

0.21

0.0

1.1

—

(3026389) Candida sp identified in Specimen by Organism specific culture

0.00

0.21

0.0

1.3

—

(3035285) Chloride [Moles/volume] in Venous blood

0.00

0.21

0.0

2.0

—

106.3

—

(3020629) Protein S Free Ag actual/normal in Platelet poor plasma by Immunoassay

0.00

0.21

0.0

1.2

—

91.0

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.4

—

(3041354) Potassium [Moles/volume] in Venous blood

0.00

0.21

0.0

2.0

—

4.2

—

(3033705) Calcium.ionized [Moles/volume] in Venous blood

0.00

0.21

0.0

2.0

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.4

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.4

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.4

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.4

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

0.21

0.0

1.4

—

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

746

0.85

0.21

5.0

2.6

2.8

mmol/l

0.58

682

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.21

0.0

1.3

—

3.5

—

(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method

0.00

0.21

0.0

1.0

—

(3024928) Oxygen saturation in Venous blood

0.00

0.21

0.0

2.9

—

(3015816) F5 gene p.Arg506Gln [Presence] in Blood or Tissue by Molecular genetics method

0.00

0.21

0.0

1.1

—

(3019230) Fractional oxyhemoglobin in Venous blood

0.00

0.21

0.0

1.6

—

62.5

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.24

0.20

1.3

—

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.3

—

(3038515) Glucose [Moles/volume] in Venous blood

0.00

0.20

0.0

2.6

—

7.8

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.20

0.0

1.3

—

(3023150) Myeloperoxidase Ab [Units/volume] in Serum

0.00

0.20

0.0

1.8

—

(3000991) Gas panel - Venous blood

1.19

0.20

4.3

4.0

—

(3002173) Hemoglobin [Mass/volume] in Arterial blood

1.16

0.18

7.1

4.9

119.0

122.3

g/l

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.14

0.18

1.3

1.8

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

1.21

0.17

1.5

1.6

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

1.21

0.17

1.5

—

(3004410) Hemoglobin A1c/Hemoglobin.total in Blood

694

0.88

0.17

5.8

6.1

38.6

40.2

mmol/mol

0.82

643

(3007853) Bacteria identified in Skin by Aerobe culture

1.17

0.17

1.5

1.8

—

(3031040) Bacteria [#/volume] in Urine by Automated count

454

1.12

0.16

4.8

3.8

—

54.3

—

(3035350) Ketones [Presence] in Urine by Test strip

345

1.12

0.16

4.9

3.4

0.0

estimate

0.00

(3019550) Sodium [Moles/volume] in Serum or Plasma

749

1.16

0.16

21.3

13.4

139.9

139.8

mmol/l

0.17

725

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.11

0.15

12.9

7.6

—

(3023103) Potassium [Moles/volume] in Serum or Plasma

751

1.15

0.13

21.5

13.5

3.9

4.0

mmol/l

0.66

727

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

289

1.11

0.13

1.8

1.9

88.6

92.5

pmol/l

0.18

136

(3002385) Erythrocyte distribution width [Ratio]

610

1.10

0.12

21.6

13.6

14.1

13.6

1.00

599

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

232

1.11

0.11

3.9

2.7

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

155

1.12

0.10

1.1

1.3

0.8

1.3

u/ml

—

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

117

1.13

0.08

1.2

1.4

34.2

17.8

u/ml

—

(3015736) pH of Urine

275

0.92

0.08

4.3

3.3

—

(3036481) Cortisol [Moles/volume] in Serum or Plasma

1.03

0.08

1.9

1.8

299.6

335.0

nmol/l

—

(1761868) Lipid panel - Serum or Plasma

257

1.07

0.06

2.7

3.0

—

(3037467) Urinalysis macro (dipstick) panel - Urine

492

0.95

0.05

4.9

3.7

—

(3027945) Reticulocytes/100 erythrocytes in Blood

1.08

0.02

3.8

2.8

1.7

1.6

—

(3009542) Hematocrit [Volume Fraction] of Blood

667

0.96

0.01

13.7

12.5

39.6

40.8

1.00

482

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

1.02

0.00

1.6

1.3

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

133

0.97

0.00

1.2

1.3

115.2

33.0

iu/ml

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

163

0.98

0.00

5.5

3.2

—

(3012516) Albumin [Mass/volume] in Urine

223

0.98

0.00

3.8

3.1

23.2

42.8

mg/l

0.66

135

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

726

1.03

0.00

19.9

11.5

15.3

22.0

mg/l

2.25

545

(3020682) Albumin/Creatinine [Ratio] in Urine

234

0.98

0.00

5.4

3.8

1.8

5.6

mg/mmol

1.61

143

(3007164) IgA [Mass/volume] in Serum or Plasma

139

1.01

0.00

1.5

1.3

2.1

2.5

g/l

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

0.0

3.0

—

(3014326) Insulin-like growth factor-I [Moles/volume] in Serum or Plasma

0.00

0.0

2.2

—

19.7

—

(3045716) Anion gap in Serum or Plasma

0.00

0.0

1.6

—

8.8

—

(3047826) Mullerian inhibiting substance [Mass/volume] in Serum or Plasma

0.00

0.0

1.0

—

3.5

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(4146454)

0.00

0.0

1.8

—

(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture

0.00

0.0

1.2

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

0.0

2.4

—

(3051651) Icteric interference index of Serum or Plasma

0.00

0.0

2.0

—

(3034426) Prothrombin time (PT)

0.00

0.0

1.2

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(43055089) Myosin Ab [Presence] in Serum or Plasma by Immunoblot

0.00

0.0

1.0

—

(21492711) Cytomegalovirus IgG Ab avidity [Presence] in Serum or Plasma by Immunoassay

0.00

0.0

1.2

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

0.0

3.0

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

0.0

1.0

—

(4027681)

0.00

0.0

1.0

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(44806420)

0.00

0.0

1.4

—

(3022145) Colonoscopy Study observation

0.93

0.00

1.5

1.1

—

(3016038) Potassium [Moles/volume] in Urine

0.00

0.0

1.2

—

19.0

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(3004915) Chlamydophila pneumoniae IgA Ab [Units/volume] in Serum

0.00

0.0

1.2

—

(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid

0.00

0.0

1.0

—

(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.0

—

(3040363) Hepatitis A virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.0

—

(3027544) Mycobacterium sp identified in Sputum by Organism specific culture

0.00

0.0

7.0

—

(3037522) Nuclear Ab [Titer] in Serum

0.90

0.00

1.6

1.3

—

447.7

—

(40761535) Cells panel - Urine sediment

0.94

0.00

7.4

3.1

—

(3041145) Herpes simplex virus IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.0

—

(3051611) Lipemic interference index of Serum or Plasma

0.00

0.0

2.6

—

(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid

0.00

0.0

1.0

—

(3018387) Mycoplasma pneumoniae IgG Ab [Units/volume] in Serum

0.00

0.0

1.1

—

(4268621)

0.00

0.0

2.3

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.0

—

(42870308) Desmosome IgG Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.5

—

(3029634) Reagin Ab [Titer] in Serum by VDRL

0.00

0.0

2.4

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.0

1.0

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

0.94

0.00

1.7

2.1

1.3

1.6

—

(3020564) Creatinine [Moles/volume] in Serum or Plasma

780

1.00

0.00

21.9

12.8

82.9

77.0

umol/l

0.39

780

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

0.00

0.0

1.5

—

(3044242) Glucose [Moles/volume] in Arterial blood

0.00

0.0

1.7

—

(3012544) pH of Venous blood

0.97

0.00

1.3

3.4

—

(3030408) 3-Methoxytyramine [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

(3019897) Erythrocyte distribution width [Ratio] by Automated count

0.00

0.0

2.7

—

13.4

—

(3008757) Leukocyte morphology finding [Identifier] in Blood

0.00

0.0

5.9

—

(3032155) Metanephrine Free [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

(3009340) Metanephrine [Moles/volume] in Serum or Plasma

0.00

0.0

1.1

—

(3019060) Gas panel - Arterial blood

1.00

0.00

6.2

4.2

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

0.0

1.5

—

(21494815) CD4 cells/100 lymphocytes in Specimen

0.00

0.0

2.0

—

(3013566) Clostridioides difficile [Presence] in Stool by Organism specific culture

0.00

0.0

1.2

—

(3019539) Treponema pallidum Ab [Titer] in Serum by Hemagglutination

0.00

0.0

2.1

—

(3000012) Reticulocyte production index

0.00

0.0

2.0

—

(3023410) Appearance of Cerebral spinal fluid

0.00

0.0

1.2

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

0.00

0.0

1.0

—

(3028679) Herpes simplex virus Ab [Presence] in Serum

0.00

0.0

1.0

—

(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.0

1.0

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.00

0.0

1.1

—

(3028369) Herpes simplex virus 1+2 DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture

0.00

0.0

1.0

—

(3017569) Oxygen content in Arterial blood

0.00

0.0

1.7

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

0.00

0.0

1.2

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

0.0

1.0

—

(3017817) Protein [Mass] in Urine collected for unspecified duration

0.00

0.0

2.2

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: CD2_BENIGN_INTRATHORACIC_NOS_EXALLC – Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Benign neoplasm: Other specified/unspecified intrathoracic organs (+ respiratory system NOS of Icd-9)

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints