Ectopic testis

Q17_ECTOPIC_TESTIS

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	519972
1. Apply sex-specific rule None	519972
2. Check conditions None	519972
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — Q55.20 Cause of death: ICD-10 — Q55.20 2 out of 7 registries used, show all original rules.	194
4. Check minimum number of events None	194
5. Include endpoints None	194
6. Filter based on genotype QC (FinnGen only)	171

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

NAME	Q17_ECTOPIC_TESTIS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	Q5520
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	Q5520
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Ectopic testis based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded (different definition than used in FinnGen).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	171	-	170
Unadjusted period prevalence (%)	0.08	-	0.08
Median age at first event (years)	7.78	-	7.77

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
194: Matched controls
1940

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

Q55.20

ICD-10 Finland

Retractile testis

+∞

273.0

194

Q53.1

ICD-10 Finland

Undescended testicle, unilateral

25.2

59.9

KFH00

NOMESCO Finland

Operation for undescended or ectopic testis

26.5

57.4

KFH10

NOMESCO Finland

Orchiopexy

20.6

20.3

G03GA01

ATC

chorionic gonadotrophin; parenteral

27.7

6.3

KF8AE

NOMESCO Finland

Ultrasound examination of scrotum

3.5

6.2

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(40766189) Gliadin peptide IgG Ab [Units/volume] in Serum by Immunoassay

2.89

2.88

1.2

1.1

—

13.40

—

(3018095) Leukocytes [#/volume] in Urine

495

1.51

1.88

4.5

6.1

12.22

8.96

e6/l

0.22

352

(3002582) Erythrocytes [#/volume] in Urine

438

1.50

1.75

3.8

5.2

7.81

20.59

e6/l

1.42

347

(3004716) Salmonella sp identified in Stool by Organism specific culture

1.97

1.71

1.1

1.2

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

1.71

0.0

1.2

—

(3009214) Lutropin [Units/volume] in Serum or Plasma

131

1.77

1.57

2.1

2.2

4.29

3.58

u/l

0.26

(3026008) Bacteria identified in Urine by Culture

141

1.72

1.50

3.2

2.5

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

218

1.56

1.40

3.0

5.3

1.37

2.05

mg/l

0.42

160

(3030467) Casts [#/volume] in Urine by Automated count

414

1.42

1.34

4.0

4.7

0.39

0.17

e6/l

0.29

321

(3019150) Specific gravity of Urine by Refractometry

238

1.52

1.32

4.3

3.2

1.02

kg/l

—

(3000330) Specific gravity of Urine by Test strip

2.55

1.31

1.5

2.3

—

(3001784) Prostate Specific Ag Free/Prostate specific Ag.total in Serum or Plasma

139

1.66

1.30

4.0

3.2

19.95

22.91

—

(3022621) pH of Urine by Test strip

2.34

1.28

1.5

—

(3013742) Prealbumin [Mass/volume] in Serum or Plasma

181

1.57

1.27

4.6

4.3

0.20

0.21

g/l

0.26

171

(44816893) Food Allergen Mix 50 (Kiwi+Pineapple+Banana+Mango) IgE Ab [Units/volume] in Serum by Multidisk

2.67

1.22

1.0

1.1

—

(3000494) Fungus identified in Specimen by Culture

134

1.64

1.20

1.1

2.2

—

(3022313) Gas panel - Capillary blood

341

1.42

1.18

7.8

8.8

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

279

1.45

1.18

3.1

4.3

1.42

0.39

e6/l

0.78

166

(3009261) Glucose [Presence] in Urine by Test strip

497

1.36

1.17

3.8

3.5

0.00

estimate

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

2.54

1.16

1.2

2.6

—

(3035350) Ketones [Presence] in Urine by Test strip

489

1.36

1.15

3.7

3.5

0.00

estimate

—

(36304419) Bacteria [Presence] in Urine

416

1.38

1.14

4.0

4.7

—

(3029937) Albumin [Presence] in Urine by Test strip

212

1.49

1.13

4.4

4.1

0.00

0.01

estimate

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

709

1.33

1.12

11.4

15.1

1.22

1.23

mmol/l

0.34

683

(3023709) Somatotropin [Mass/volume] in Serum or Plasma

2.00

1.05

6.3

6.0

2.11

2.13

ug/l

—

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

277

1.41

1.04

3.8

3.9

0.39

0.28

e6/l

0.21

164

(3022145) Colonoscopy Study observation

1.72

1.01

2.1

1.4

—

(3023368) Bacteria identified in Blood by Culture

270

1.41

1.01

2.8

5.1

—

(3015736) pH of Urine

443

1.34

1.00

3.8

3.2

6.25

6.22

—

(3000093) Morphology [Interpretation] in Blood Narrative

0.00

0.98

0.0

1.2

—

(3027231) Wheat IgE Ab [Units/volume] in Serum

1.98

0.98

1.3

1.4

2.91

5.87

u/ml

—

(3026250) Tacrolimus [Mass/volume] in Blood

0.00

0.97

0.0

43.7

—

6.57

—

(3037467) Urinalysis macro (dipstick) panel - Urine

721

1.29

0.96

3.8

4.3

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

0.96

0.0

5.5

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

0.96

0.0

5.5

—

(3051651) Icteric interference index of Serum or Plasma

2.18

0.92

5.5

4.9

—

(3021601) Nitrite [Presence] in Urine by Test strip

495

1.31

0.92

5.3

5.1

0.00

estimate

—

(3017181) Myelocytes/100 leukocytes in Blood

1.63

0.90

2.1

6.5

0.60

0.80

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

469

1.30

0.89

4.9

5.1

—

(3051611) Lipemic interference index of Serum or Plasma

2.03

0.87

5.5

4.6

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

402

0.73

0.85

1.9

—

(3026782) Osmolality of Urine

288

1.35

0.84

2.4

3.7

541.91

617.66

mosm/kgh2o

1.02

257

(3023103) Potassium [Moles/volume] in Serum or Plasma

143

1328

1.29

0.81

12.5

15.4

3.98

3.99

mmol/l

0.09

134

1290

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

120

1092

1.26

0.81

4.1

3.3

2.14

2.09

mu/l

0.18

113

1030

(3042111) Morphology [Interpretation] in Bone marrow Narrative

0.00

0.79

0.0

2.6

—

(3005702) Mycobacterium sp identified in Specimen by Organism specific culture

0.00

0.79

0.0

1.4

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

727

1.25

0.77

10.9

13.6

1.22

mmol/l

0.05

679

(3004588) Protein electrophoresis panel - Serum or Plasma

0.00

0.76

0.0

2.6

—

(3007853) Bacteria identified in Skin by Aerobe culture

194

1.39

0.76

1.3

1.9

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

135

0.58

0.76

1.3

1.4

—

(3005013) Prostate Specific Ag Free [Mass/volume] in Serum or Plasma

100

1.54

0.75

3.1

2.5

0.51

0.60

ug/l

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

1.87

0.74

1.4

1.3

—

(3007164) IgA [Mass/volume] in Serum or Plasma

573

0.78

0.73

1.5

1.7

1.69

1.78

g/l

0.14

282

(3002670) Multiple inhalant allergen IgE Ab [Units/volume] in Serum

1.95

0.71

1.2

1.4

—

(3019250) Coagulation factor VIII activity actual/normal in Platelet poor plasma by Coagulation assay

110

1.50

0.71

3.5

7.3

151.69

168.95

0.76

110

(3018418) pH of Serum or Plasma

296

1.31

0.71

2.1

5.1

7.31

7.40

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

0.53

0.69

1.2

1.3

—

(43055554) Base excess.100% oxygenated [Moles/volume] standard in Capillary blood by calculation

373

1.27

0.66

8.9

9.5

1.41

1.09

mmol/l

0.46

273

(3016251) Hemoglobin.gastrointestinal [Presence] in Stool

1.61

0.66

2.1

2.7

—

(3048689) Calprotectin [Mass/mass] in Stool

309

1.29

0.65

3.2

3.5

148.50

109.75

ug/g

0.35

265

(3000492) Spirometry study

152

0.64

1.3

1.5

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

113

1.45

0.63

1.3

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

220

1.32

0.61

1.8

2.4

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

196

0.69

0.61

2.4

1.8

—

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

103

940

1.20

0.61

3.8

3.0

14.56

14.63

pmol/l

0.10

878

(3024561) Albumin [Mass/volume] in Serum or Plasma

463

1.23

0.60

8.5

9.3

38.24

37.84

g/l

0.16

442

(3038177) Helicobacter pylori Ab [Presence] in Serum

0.00

0.59

0.0

1.0

—

(3004383) Neutrophil cytoplasmic Ab.classic [Titer] in Serum by Immunofluorescence

0.00

0.59

0.0

1.1

—

(3019550) Sodium [Moles/volume] in Serum or Plasma

141

1328

1.23

0.59

12.7

15.5

139.52

139.50

mmol/l

0.06

134

1303

(3011397) Hemoglobin [Presence] in Urine by Test strip

307

1.25

0.55

4.8

3.1

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

307

1.25

0.55

4.2

3.3

—

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

1.50

0.54

1.6

1.5

—

(3007220) Creatine kinase [Enzymatic activity/volume] in Serum or Plasma

234

1.28

0.53

1.8

3.1

230.79

375.59

u/l

0.48

234

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

103

948

1.18

0.53

3.3

4.35

4.41

mmol/l

0.28

906

(40761511) CBC panel - Blood by Automated count

153

1459

1.23

0.53

9.5

8.5

—

(3030366) Cystatin C [Mass/volume] in Serum or Plasma

189

1.31

0.52

12.1

22.4

1.08

1.09

mg/l

0.07

189

(3002385) Erythrocyte distribution width [Ratio]

151

1442

1.21

0.49

13.7

17.2

13.42

13.31

0.27

145

1426

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

1.51

0.48

2.1

—

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

1.51

0.48

2.1

1.3

—

(36032269) Testosterone Free [Moles/volume] in Serum or Plasma by calculation

1.48

0.47

2.9

1.6

222.29

256.81

pmol/l

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

218

0.76

0.45

1.4

1.6

—

(3006418) Campylobacter sp identified in Tissue by Organism specific culture

1.41

0.45

1.0

—

(3014765) Yersinia sp identified in Stool by Organism specific culture

1.39

0.44

1.0

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

1.39

0.44

2.6

2.5

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

1.39

0.44

2.6

2.5

—

(3036489) Thrombin time

113

1.35

0.44

3.7

7.8

21.93

23.70

0.97

113

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

596

0.85

0.43

2.0

1.8

2.34

3.22

u/ml

—

102

(3022217) INR in Platelet poor plasma by Coagulation assay

344

1.21

0.43

5.4

6.3

1.06

1.26

inr

2.59

(3032035) Polymorphonuclear cells/100 leukocytes in Blood

1.63

0.43

1.4

5.5

58.80

46.97

—

(3030905) Polymorphonuclear cells [#/volume] in Blood

1.63

0.43

1.4

4.8

4.12

2.93

e9/l

—

(3052851) Hemolysis interference index of Serum or Plasma

1.45

0.43

4.4

3.9

—

(3008295) Osmolality of Serum or Plasma

1.58

0.42

1.2

1.8

289.40

292.90

mosm/kgh2o

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

1.58

0.42

2.0

1.9

—

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

242

1.23

0.42

1.8

2.4

—

(3028707) Methadone [Presence] in Urine by Screen method

1.42

0.41

1.5

2.8

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

1.37

0.41

1.3

1.2

—

(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay

0.00

0.41

0.0

1.6

—

(3019601) Blood group antibody investigation [Interpretation] in Plasma or RBC

0.00

0.41

0.0

3.8

—

(3007798) IgG/Albumin [Mass Ratio] in Cerebral spinal fluid

0.00

0.41

0.0

2.0

—

(3043723) Beta 1 globulin [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.41

0.0

1.5

—

(3024474) Albumin [Mass/volume] in Cerebral spinal fluid

0.00

0.41

0.0

1.1

—

250.60

—

(3032352) Blasts [#/volume] in Cerebral spinal fluid

0.00

0.41

0.0

8.9

—

(3023150) Myeloperoxidase Ab [Units/volume] in Serum

0.00

0.41

0.0

1.0

—

(3021513) Carbon dioxide [Partial pressure] in Mixed venous blood

0.00

0.41

0.0

4.5

—

(3038071) Oxygen [Partial pressure] in Mixed venous blood

0.00

0.41

0.0

4.5

—

(40759883) Oligoclonal Bands IgG [Presence] in Cerebral spinal fluid by Isoelectric focusing

0.00

0.40

0.0

1.1

—

(3012110) Lysozyme [Mass/volume] in Serum or Plasma

0.00

0.40

0.0

1.6

—

9.93

—

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

1.32

0.40

10.0

28.8

—

(3027944) Amphetamines [Presence] in Urine

188

1.25

0.40

1.3

1.8

—

(3005757) Coagulation factor V activity actual/normal in Platelet poor plasma by Coagulation assay

1.40

0.38

4.8

5.0

91.60

95.22

—

(3027008) Opiates [Presence] in Urine

190

1.24

0.37

1.3

2.0

—

(3028300) Cannabinoids [Presence] in Urine

191

1.23

0.35

1.3

2.0

—

(3011897) Casein IgE Ab [Units/volume] in Serum

1.41

0.35

1.0

1.7

0.64

5.54

u/ml

—

(3011288) Drugs identified in Urine by Screen method

118

1.29

0.34

1.5

2.7

—

(3010130) Cytomegalovirus IgG Ab [Units/volume] in Serum or Plasma

0.67

0.34

2.8

2.2

—

85.40

—

(3017918) Cytomegalovirus IgG Ab [Titer] in Serum or Plasma

0.66

0.33

2.8

2.2

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

0.66

0.33

2.8

2.2

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

1.31

0.33

1.8

2.3

—

(1175715) Chlamydophila pneumoniae IgM Ab [Presence] in Serum by Immunoassay

1.37

0.33

1.0

1.2

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

1.32

0.32

1.8

2.7

—

(40763470) Parainfluenza virus 4 RNA [Presence] in Isolate by NAA with probe detection

1.29

0.32

2.8

2.5

—

(40763324) Parainfluenza virus 1 RNA [Presence] in Isolate by NAA with probe detection

1.29

0.32

2.8

2.5

—

(3035637) Corticotropin [Mass/volume] in Plasma

0.70

0.31

1.1

1.7

—

(42529406) Shigella sp [Presence] in Stool by Culture

1.36

0.31

1.0

1.1

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

147

1517

0.87

0.31

3.3

3.8

—

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

826

1.12

0.30

6.3

7.0

131.21

138.44

u/l

0.30

789

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

1.30

0.28

2.5

—

(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection

1.30

0.28

2.4

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

161

0.79

0.28

2.0

2.1

—

(40768804) Tissue Pathology biopsy report

277

0.85

0.27

1.6

1.7

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

1.27

0.25

1.1

1.3

—

(3000515) Antithrombin actual/normal in Platelet poor plasma by Chromogenic method

143

1.21

0.24

5.6

9.0

86.88

88.83

0.09

143

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

305

0.87

0.24

3.1

3.8

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

613

0.90

0.24

2.0

1.9

—

(3042936) Bacteria identified in Isolate by Culture

162

1.19

0.24

1.9

2.3

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

1.28

0.23

1.7

2.7

—

(3020891) Body temperature

1.26

0.22

15.2

8.8

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

847

1.09

0.22

2.9

2.6

5.43

5.57

mmol/l

0.84

775

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

240

0.86

0.22

2.4

1.6

99.82

102.49

pmol/l

0.09

124

(40760888) Immunoglobulin light chains.free panel - Serum

0.00

0.21

0.0

4.0

—

(3044212) Herpes simplex virus 1+2 IgM Ab [Presence] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(40761849) Varicella zoster virus IgG Ab [Units/volume] in Cerebral spinal fluid by Immunoassay

0.00

0.21

0.0

1.2

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

0.00

0.21

0.0

1.0

—

(3019420) Tryptase [Mass/volume] in Serum or Plasma

0.00

0.21

0.0

1.9

—

5.72

—

(3045683) HLA typing for celiac disease panel - Blood or Tissue

0.00

0.21

0.0

1.0

—

(3013247) Albumin in CSF/Albumin in Serum or Plasma

0.00

0.21

0.0

1.1

—

6.77

—

(3002823) Mycoplasma pneumoniae IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3041082) Glomerular basement membrane Ab [Titer] in Serum by Immunofluorescence

0.00

0.21

0.0

1.8

—

(3037677) Mycoplasma pneumoniae IgM Ab [Titer] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3014038) Collagen crosslinked N-telopeptide [Moles/volume] in Urine

0.00

0.21

0.0

2.3

—

(3029379) Protein.monoclonal band 4 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.21

0.0

1.1

—

0.00

—

(3000012) Reticulocyte production index

0.00

0.21

0.0

2.2

—

(3000899) Streptococcus pneumoniae Danish serotype 7F IgG Ab [Mass/volume] in Serum

0.00

0.21

0.0

2.3

—

0.58

—

(3040893) Potassium [Moles/volume] in Capillary blood

0.00

0.21

0.0

4.1

—

4.43

—

(3015183) Erythrocyte sedimentation rate

0.00

0.21

0.0

1.1

—

(3031072) Herpes simplex virus 1 IgG Ab [Presence] in Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(3005260) Streptococcus pneumoniae Danish serotype 9V IgG Ab [Mass/volume] in Serum

0.00

0.21

0.0

2.3

—

0.48

—

(3029338) Protein.monoclonal band 3 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.21

0.0

1.1

—

0.00

—

(3012320) Pathologist interpretation of Cerebral spinal fluid tests

0.00

0.21

0.0

1.9

—

(3045424) Erythrocytes [Presence] in Urine

0.00

0.21

0.0

1.4

—

(3035797) Protein.monoclonal band 2 [Mass/volume] in Serum or Plasma by Electrophoresis

0.00

0.21

0.0

1.2

—

0.00

—

(3041672) Baker's yeast Ab [Presence] in Serum

0.00

0.21

0.0

1.2

—

(3004905) Lipase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.21

0.0

2.3

—

22.50

—

(42868421) Varicella zoster virus IgM Ab [Presence] in Cerebral spinal fluid by Immunoassay

0.00

0.21

0.0

1.2

—

(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma

0.00

0.21

0.0

1.1

—

218.84

—

(3014148) Varicella zoster virus Ab [Titer] in Serum

1.17

0.21

1.0

1.2

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

1.17

0.21

2.0

1.7

—

(3007844) Epstein Barr virus capsid IgM Ab [Units/volume] in Serum by Immunoassay

123

0.80

0.21

2.7

2.0

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

279

1.13

0.21

1.4

2.1

—

(3033882) Carnitine [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.7

—

34.00

—

(42869858) Acute and chronic leukemia fusion transcript panel - Blood or Tissue by Molecular genetics method

0.00

0.21

0.0

1.1

—

(3049714) Procollagen type I.N-terminal propeptide [Mass/volume] in Serum

0.00

0.21

0.0

3.5

—

201.07

—

(40768795) Lymph node Pathology biopsy report

0.00

0.21

0.0

1.5

—

(3007302) Hemoglobin [Mass/volume] in Mixed venous blood

0.00

0.21

0.0

2.1

—

(3000722) Carnitine free (C0) [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.7

—

25.85

—

(3003031) Transferrin.carbohydrate deficient.disialo/Transferrin.total in Serum or Plasma

197

0.85

0.20

2.3

1.8

1.49

1.42

0.21

180

(3021589) Normoblasts [#/volume] in Blood

871

0.92

0.20

7.8

12.6

0.00

e9/l

0.66

645

(3041806) Other cells [#/volume] in Blood by Manual count

0.00

0.20

0.0

1.6

—

(3012447) Hantavirus puumala IgG Ab [Titer] in Serum

0.00

0.20

0.0

1.1

—

(3009595) Pneumocystis jiroveci DNA [Presence] in Specimen by NAA with probe detection

0.00

0.20

0.0

1.5

—

(3041096) Erythrocytes [Presence] in Urine by Automated

214

1.14

0.18

2.0

3.4

—

(3012095) Magnesium [Moles/volume] in Serum or Plasma

247

0.88

0.18

12.4

14.1

0.86

0.81

mmol/l

0.32

239

(3044889) 12 lead EKG panel

595

0.92

0.18

2.3

2.4

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

1.15

0.17

5.9

4.9

—

(3019832) Treponema pallidum Ab [Presence] in Serum

110

1.19

0.17

1.3

2.1

—

(3003694) ABO and Rh group [Type] in Blood

361

1.10

0.17

1.3

1.4

—

(4200892) Spirometry reversibility

1.15

0.16

1.6

1.5

—

(3016879) Cocaine [Presence] in Urine

178

1.14

0.16

1.4

2.0

—

(3024889) Methemoglobin/Hemoglobin.total in Venous blood

0.79

0.16

26.2

13.8

0.78

0.64

—

(3010517) Carboxyhemoglobin/Hemoglobin.total in Venous blood

0.75

0.16

26.2

13.2

1.68

1.46

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

777

1.07

0.15

7.4

8.8

104.38

102.27

ml/min/173m2

0.36

539

(1001926) Buprenorphine [Presence] in Urine by Screen method

140

1.16

0.15

1.4

2.2

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

188

1.13

0.15

2.0

2.2

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

973

0.93

0.15

7.9

13.4

3.72

3.44

e9/l

0.61

789

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

202

0.88

0.15

3.7

4.2

269.66

1425.44

ng/l

1.49

145

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.10

0.15

3.0

1.8

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

432

1.08

0.15

2.9

3.9

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

0.82

0.15

13.6

17.6

0.79

0.71

—

(3000764) Benzodiazepines [Presence] in Urine

189

1.12

0.14

1.4

2.0

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

760

1.07

0.14

8.8

9.4

6.13

6.31

mmol/l

0.37

732

(3002032) Base excess in Venous blood by calculation

385

1.08

0.13

9.3

10.7

1.56

1.17

mmol/l

0.54

315

(3033658) Prothrombin time (PT) actual/Normal

415

1.08

0.13

6.9

8.8

82.98

83.39

0.04

410

(40760892) CBC W Ordered Manual Differential panel - Blood

843

1.06

0.12

7.3

11.8

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

188

0.90

0.11

1.1

1.0

—

(3032773) Endomysium IgG Ab [Titer] in Serum

1.04

0.09

1.0

1.1

—

(3025941) Bacteria identified in Stool by Culture

1.10

0.08

1.1

1.2

—

(3021387) Prolactin [Units/volume] in Serum or Plasma

1.08

0.08

1.7

1.5

256.00

333.71

mu/l

—

(3047007) Chlamydophila sp Ab [Presence] in Serum

1.06

0.08

1.0

1.2

—

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

1.08

0.07

1.4

1.9

—

(40761536) Microorganisms panel - Urine sediment

1.08

0.07

1.6

3.8

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

0.83

0.07

13.6

17.7

0.79

1.31

—

(3001604) Monocytes [#/volume] in Blood

899

0.96

0.07

6.9

11.2

0.65

0.58

e9/l

0.96

725

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

216

1.07

0.07

1.3

1.5

—

(3014576) Chloride [Moles/volume] in Serum or Plasma

173

0.92

0.07

14.0

10.5

106.37

104.89

mmol/l

0.98

173

(1761868) Lipid panel - Serum or Plasma

325

1.06

0.06

2.4

2.1

—

(3006315) Basophils [#/volume] in Blood

897

0.97

0.06

7.0

11.2

0.04

e9/l

0.42

723

(3000924) Streptococcus pyogenes [Presence] in Throat by Organism specific culture

119

1.10

0.06

1.5

1.4

—

(3044640) Blood type and Crossmatch panel - Blood

354

0.95

0.06

3.0

3.9

—

(3013512) EKG study

161

0.93

0.05

3.2

3.0

—

(3019069) Monocytes/100 leukocytes in Blood

875

0.97

0.05

6.1

11.7

8.71

8.70

0.01

838

(3018010) Neutrophils/100 leukocytes in Blood

895

0.97

0.05

5.8

11.1

49.22

48.92

0.08

867

(3019198) Lymphocytes [#/volume] in Blood

925

0.97

0.05

6.9

11.2

2.50

2.30

e9/l

0.76

769

(3009542) Hematocrit [Volume Fraction] of Blood

173

1719

1.06

0.04

15.7

18.6

41.50

40.96

0.72

162

1652

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

160

0.93

0.04

2.3

2.2

—

(3014111) Lactate [Moles/volume] in Serum or Plasma

180

0.94

0.04

15.9

15.5

1.31

1.41

mmol/l

0.30

173

(3013707) Erythrocyte sedimentation rate by Westergren method

898

1.03

0.03

3.8

4.7

6.38

7.20

mm/h

0.45

848

(40768797) Stomach Pathology biopsy report

102

1.08

0.03

1.5

1.4

—

(3010813) Leukocytes [#/volume] in Blood

173

1721

1.05

0.03

15.2

17.4

7.03

6.64

e9/l

1.25

165

1637

(3002030) Lymphocytes/100 leukocytes in Blood

911

0.98

0.03

5.9

11.3

34.31

35.32

0.30

882

(3013115) Eosinophils [#/volume] in Blood

919

1.02

0.03

7.0

12.3

0.26

0.23

e9/l

0.31

763

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

108

0.92

0.03

1.0

1.2

—

(3003888) Timothy IgE Ab [Units/volume] in Serum

158

0.95

0.02

1.3

1.2

8.45

7.35

u/ml

—

127

(3007461) Platelets [#/volume] in Blood

173

1722

1.04

0.02

15.2

17.5

259.81

259.79

e9/l

0.00

164

1642

(3022096) Basophils/100 leukocytes in Blood

851

1.02

0.02

5.7

11.8

0.50

0.66

2.16

820

(3006923) Alanine aminotransferase [Enzymatic activity/volume] in Serum or Plasma

142

1412

1.02

0.01

8.6

10.0

33.24

31.06

u/l

0.33

135

1374

(3035941) MCH [Entitic mass]

173

1723

1.04

0.01

15.2

17.3

29.23

29.12

0.27

168

1704

(3026361) Erythrocytes [#/volume] in Blood

173

1723

1.04

0.01

15.2

17.4

4.84

4.79

e12/l

0.62

165

1638

(3002256) Pathology report gross observation

106

0.94

0.01

1.2

—

(3000963) Hemoglobin [Mass/volume] in Blood

173

1724

1.03

0.00

15.6

17.8

141.03

139.00

g/l

0.81

168

1706

(3008401) Mugwort IgE Ab [Units/volume] in Serum

154

0.97

0.00

1.3

1.2

2.17

1.52

u/ml

—

122

(21494755) Public health laboratory ask at order entry panel

151

0.99

0.00

1.2

1.3

—

(3024354) Oxygen [Partial pressure] in Venous blood

376

1.01

0.00

9.7

10.4

5.55

5.30

kpa

0.29

365

(36660697) Celiac disease serology panel - Serum

261

1.00

0.00

1.3

1.2

—

(3006504) Eosinophils/100 leukocytes in Blood

864

0.99

0.00

5.9

11.6

3.31

3.50

0.29

829

(40758558) Short blood count panel - Blood

558

1.01

0.00

5.2

10.5

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

223

0.98

0.00

2.5

2.6

17.50

30.06

ng/l

—

122

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

148

1483

0.99

0.00

10.5

12.0

29.93

24.47

mg/l

0.87

104

961

(3000991) Gas panel - Venous blood

368

1.01

0.00

11.2

12.0

—

(3005772) Bilirubin.conjugated [Moles/volume] in Serum or Plasma

215

0.97

0.00

8.6

6.7

6.40

8.67

umol/l

0.51

184

(3024731) MCV [Entitic volume]

172

1722

0.99

0.00

15.3

17.3

86.00

85.97

0.02

167

1702

(3003327) Ova and parasites identified in Stool by Light microscopy

108

1.02

0.00

2.0

1.7

—

(3011391) Calcitriol [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.3

—

(40759844) Sjogrens syndrome-B extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(3022058) Hepatitis B virus DNA [Presence] in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

1.4

—

(40762119) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.1

—

(3012220) Varicella zoster virus IgM Ab [Presence] in Serum by Immunoassay

0.96

-0.00

1.0

1.2

—

(3034426) Prothrombin time (PT)

0.00

-0.00

0.0

1.2

—

(3023601) Vancomycin resistant enterococcus [Presence] in Specimen by Organism specific culture

0.00

-0.00

0.0

3.4

—

(40759849) Smith extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(40757349) CD3+CD4+ (T4 helper) cells/CD3+CD8+ (T8 suppressor cells) cells [# Ratio] in Blood

0.00

-0.00

0.0

1.2

—

(4035726) Immunohistochemistry procedure

0.91

-0.00

1.4

2.0

—

(3034368) Herpes virus 6 IgM Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.2

—

(3026515) Parvovirus B19 IgM Ab [Units/volume] in Serum

0.00

-0.00

0.0

1.1

—

(3032868) Hemoglobin electrophoresis panel in Blood

0.00

-0.00

0.0

1.9

—

(3023659) Complement C1 esterase inhibitor.functional/Complement C1 esterase inhibitor.total in Serum or Plasma

0.00

-0.00

0.0

1.0

—

111.67

—

(3022907) Direct antiglobulin test.polyspecific reagent [Presence] on Red Blood Cells

0.00

-0.00

0.0

1.6

—

(40759842) Ribonucleoprotein extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

-0.00

0.0

1.1

—

(3030313) Adrenal Ab [Titer] in Serum

0.00

-0.00

0.0

1.6

—

(3037551) Cancer Ag 125 [Units/volume] in Serum or Plasma

0.00

-0.00

0.0

3.7

—

20.57

—

(3009550) Parvovirus B19 IgG Ab [Titer] in Serum

0.00

-0.00

0.0

1.1

—

(3006442) Creatine [Moles/volume] in Serum or Plasma

0.00

-0.00

0.0

1.2

—

77.50

—

(3020047) Haemophilus influenzae B Ab [Mass/volume] in Serum

0.00

-0.00

0.0

1.7

—

(3042631) Mycobacterium sp identified in Specimen

0.00

-0.00

0.0

17.0

—

(3048821) Cortisol [Moles/volume] in Serum or Plasma --post 1 mg dexamethasone PO overnight

0.00

-0.00

0.0

1.2

—

(3006109) Coagulation factor IX activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

-0.00

0.0

1.2

—

96.40

—

(3010838) Calcium [Moles/time] in 24 hour Urine

0.00

-0.00

0.0

2.3

—

4.70

—

(3036185) Alkaline phosphatase.liver 2 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.0

—

2.74

—

(3002222) Hepatitis E virus IgM Ab [Presence] in Serum

0.00

-0.00

0.0

1.0

—

(3006922) Hepatitis E virus Ab [Presence] in Serum

0.00

-0.00

0.0

1.1

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

0.99

-0.00

1.0

1.1

—

(3012441) Differential panel - Pleural fluid

0.00

-0.00

0.0

1.7

—

(3013201) Beta-2-Microglobulin [Mass/volume] in Serum or Plasma

0.00

-0.00

0.0

3.4

—

2.61

—

(3037756) Immunofixation for Serum or Plasma

0.00

-0.00

0.0

1.0

—

(3038702) Sodium [Moles/volume] in Capillary blood

0.00

-0.00

0.0

4.2

—

138.60

—

(40760512) CD34 cells/100 cells in Bone marrow

0.00

-0.00

0.0

2.5

—

(3029023) Hepatitis E virus IgG Ab [Presence] in Serum by Immunoassay

0.00

-0.00

0.0

1.0

—

(3007695) Herpes simplex virus 2 IgG Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.2

—

(3011363) Streptococcus pneumoniae Ag [Presence] in Urine

0.00

-0.00

0.0

1.0

—

(3032567) Hepatitis B virus DNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection

0.00

-0.00

0.0

1.0

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

0.97

-0.00

1.7

2.0

—

(3002619) Bacteria identified in Specimen by Culture

0.00

-0.00

0.0

1.4

—

(40759836) Histone Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(1001833) Epstein Barr virus DNA [Units/volume] (viral load) in Blood by NAA with probe detection

0.00

-0.00

0.0

5.1

—

(3048402) Erythrocytes [#/area] in Urine sediment by Automated count

0.00

-0.00

0.0

1.4

—

18.43

—

(40759843) Sjogrens syndrome-A extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(40758292) HTLV I+II Ab panel - Serum

0.00

-0.00

0.0

1.4

—

(40759812) SCL-70 extractable nuclear Ab [Presence] in Serum by Immunoblot

0.00

-0.00

0.0

1.1

—

(3008536) Aspergillus sp Ab [Presence] in Serum

0.00

-0.00

0.0

2.3

—

(40761535) Cells panel - Urine sediment

0.91

-0.00

12.6

3.2

—

(3044927) Protein electrophoresis panel - Urine

0.00

-0.00

0.0

1.2

—

(3035062) Alkaline phosphatase.liver 1 [Enzymatic activity/volume] in Serum or Plasma

0.00

-0.00

0.0

1.0

—

37.40

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

0.97

-0.00

3.3

2.7

—

(3043257) Herpes virus 6 IgG Ab [Presence] in Cerebral spinal fluid

0.00

-0.00

0.0

1.3

—

(3004616) Nuclear Ab [Presence] in Serum

0.00

-0.00

0.0

1.0

—

(3006270) Folate [Moles/volume] in Blood

0.00

-0.00

0.0

1.2

—

473.60

—

Mortality – FinRegistry

↥

This endpoint is excluded (different definition than used in FinnGen).

Relationships between endpoints

↥

Index endpoint: Q17_ECTOPIC_TESTIS – Ectopic testis

GWS hits: -

This endpoint is excluded (different definition than used in FinnGen).

≡ Risteys

R13

FinnGen R12 + FinRegistry

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Ectopic testis

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Ectopic testis (Q17_ECTOPIC_TESTIS)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints