Contact with hypodermic needle

VWXY20_CONTACT_W_HYPODE_NEEDLE

No definition available.

Endpoint definition

↥

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule None	520210
2. Check conditions None	520210
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — W46 Cause of death: ICD-10 — W46 2 out of 7 registries used, show all original rules.	208
4. Check minimum number of events None	208
5. Include endpoints None	208
6. Filter based on genotype QC (FinnGen only)	208

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 5
First used in FinnGen datafreeze: DF4
Parent code in ICD-10: W[2-4]

NAME	VWXY20_CONTACT_W_HYPODE_NEEDLE
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	W46
HD_ICD_9
HD_ICD_8
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	W46
COD_ICD_9
COD_ICD_8
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Contact with hypodermic needle based on the number of shared cases.

Similar with more cases:

Similar with less cases:

None

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	208	172	36
Unadjusted period prevalence (%)	0.05	0.06	0.02
Median age at first event (years)	35.24	35.03	36.22

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

Not a core endpoint, no data to show.

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
185: Matched controls
1851

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

W46

ICD-10 Finland

Contact with hypodermic needle

+∞

265.5

185

S61.0

ICD-10 Finland

Open wound of finger(s) without damage to nail

8.7

26.4

104

Z25.8

ICD-10 Finland

Need for immunization against other specified single viral diseases

5.3

16.9

142

Z25.1

ICD-10 Finland

Need for immunization against influenza

6.9

9.8

Z03.9

ICD-10 Finland

Observation for suspected disease or condition, unspecified

2.9

6.5

177

LabWAS

↥

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(3023421) Hepatitis B virus surface Ab [Units/volume] in Serum

134

9.45

52.69

1.7

1.3

259.88

313.63

miu/ml

0.51

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

6.73

16.52

1.8

2.1

—

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

6.45

15.86

2.1

2.2

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

333

3.15

13.54

2.4

1.6

—

(3041870) Hepatitis C virus IgG Ab [Presence] in Serum or Plasma by Immunoassay

+∞

11.56

1.5

0.0

—

(40760007) HIV 1+2 Ab+HIV1 p24 Ag [Presence] in Serum or Plasma by Immunoassay

+∞

11.56

1.5

0.0

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

197

3.27

11.41

2.0

1.5

—

(3019225) pH of Specimen

109

3.91

11.32

2.9

4.1

—

(3013512) EKG study

295

2.63

8.69

3.1

2.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

6.78

6.84

1.3

1.1

—

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

100

632

2.12

6.56

2.3

1.8

—

(3003338) MCHC [Mass/volume]

132

1648

0.46

6.54

11.8

12.4

333.45

333.14

g/l

0.16

132

1641

(3005988) Vibrio sp identified in Specimen by Organism specific culture

5.75

5.87

1.1

1.3

—

(3025468) Yersinia sp identified in Specimen by Organism specific culture

5.75

5.87

1.1

1.3

—

(21493466) Plesiomonas shigelloides DNA [Presence] in Stool by NAA with non-probe detection

5.75

5.87

1.1

1.3

—

(42868716) Shigella species+EIEC invasion plasmid antigen H ipaH gene [Presence] in Stool by NAA with probe detection

5.47

5.59

1.1

1.3

—

(3012568) Campylobacter sp identified in Specimen by Organism specific culture

5.47

5.59

1.1

1.3

—

(3024522) Salmonella sp identified in Specimen by Organism specific culture

5.47

5.59

1.1

1.3

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

110

757

1.96

5.37

2.8

2.1

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

182

2.41

5.23

1.9

1.8

—

(37019628) Gastrointestinal bacterial pathogens panel - Stool by NAA with probe detection

4.27

4.97

1.2

1.3

—

(3050380) Cytology report of Cervical or vaginal smear or scraping Cyto stain

119

2.56

4.56

1.2

1.4

—

(40768804) Tissue Pathology biopsy report

679

1.77

3.92

2.1

1.8

—

(40768797) Stomach Pathology biopsy report

185

2.14

3.83

1.1

1.2

—

(36660697) Celiac disease serology panel - Serum

178

2.16

3.82

1.1

1.2

—

(3032080) INR in Blood by Coagulation assay

392

1.83

3.65

3.2

6.0

1.02

1.07

inr

—

132

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

3.19

3.60

1.4

1.5

—

(3005033) Fetal Nuchal fold Thickness US

170

0.28

2.84

1.6

1.4

—

(3047352) Trisomy 18 risk [Likelihood] in Fetus

171

0.28

2.84

1.6

1.4

—

(3016244) Insulin [Units/volume] in Serum or Plasma

4.58

2.82

2.4

2.7

13.76

21.67

mu/l

—

(3044889) 12 lead EKG panel

954

0.61

2.82

2.0

2.6

—

(3028772) Osteocalcin [Mass/volume] in Serum or Plasma

6.14

2.71

4.3

2.1

—

(3048689) Calprotectin [Mass/mass] in Stool

284

1.75

2.60

2.0

2.5

64.10

94.07

ug/g

0.91

225

(40771527) Human papilloma virus E6+E7 mRNA [Presence] in Cervix by NAA with probe detection

5.58

2.56

3.7

1.7

—

(3043238) Trisomy 21 risk [Likelihood] in Fetus

173

0.33

2.40

1.7

1.5

—

(3045424) Erythrocytes [Presence] in Urine

3.31

2.33

1.2

1.1

—

(42870588) Differential panel, method unspecified - Blood

507

1.54

2.16

5.5

5.7

—

(3038026) Centromere Ab [Units/volume] in Serum

4.38

2.16

1.3

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

179

1618

1.76

2.13

5.1

4.1

—

(3045414) Leukocytes [Presence] in Urine

2.23

2.04

1.9

1.5

—

(3018171) Choriogonadotropin [Units/volume] in Serum or Plasma

221

1.70

2.02

1.9

2.2

957.01

3796.62

u/l

0.93

(3002256) Pathology report gross observation

182

1.76

1.99

1.2

—

(40761511) CBC panel - Blood by Automated count

199

1882

2.33

1.97

10.2

8.9

—

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

410

1.54

1.95

2.3

2.6

13.48

14.25

ng/l

0.06

162

(44816844) Macroprolactin [Units/volume] in Serum or Plasma

2.47

1.88

1.3

1.2

—

(3021125) Hepatitis C virus RNA [Presence] in Serum or Plasma by NAA with probe detection

4.24

1.83

1.6

1.8

—

(3008757) Leukocyte morphology finding [Identifier] in Blood

4.24

1.83

2.6

3.7

—

(36032419) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Immunoassay

1.98

1.82

2.9

1.8

—

(3022313) Gas panel - Capillary blood

2.36

1.73

2.2

3.2

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

385

1.51

1.72

2.3

1.8

—

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

530

1.45

1.70

2.7

2.1

—

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

342

0.57

1.66

1.4

1.5

—

(40768443) Skin Pathology biopsy report

2.39

1.63

1.1

—

(40766800) Mycobacterium tuberculosis stimulated gamma interferon release by CD4+ T-cells [Units/volume] corrected for background in Blood

3.06

1.59

1.2

—

(3004616) Nuclear Ab [Presence] in Serum

3.06

1.59

1.3

1.2

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

506

1.41

1.46

1.4

1.3

4.61

2.12

u/ml

0.25

144

(3035637) Corticotropin [Mass/volume] in Plasma

3.17

1.44

1.0

1.3

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

3.17

1.44

1.0

1.4

—

(3022217) INR in Platelet poor plasma by Coagulation assay

1.84

1.44

8.3

11.7

0.98

1.26

inr

—

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

2.99

1.36

1.0

1.4

—

(21494755) Public health laboratory ask at order entry panel

301

0.59

1.35

1.2

1.3

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

597

1.37

1.34

4.5

6.5

1.22

mmol/l

0.06

509

(3004490) Bicarbonate [Moles/volume] standard in Capillary blood

2.14

1.30

2.3

3.0

25.13

24.10

mmol/l

—

(3023183) Ammonium ion [Moles/volume] in Plasma

2.82

1.29

1.4

5.4

35.80

41.08

umol/l

—

(3019897) Erythrocyte distribution width [Ratio] by Automated count

2.34

1.28

2.5

1.8

13.62

13.13

—

(3004789) Transferrin [Mass/volume] in Serum or Plasma

164

1.60

1.27

1.5

2.2

2.58

2.50

g/l

0.39

149

(3026989) Triiodothyronine (T3) Free [Moles/volume] in Serum or Plasma

143

0.47

1.26

1.7

4.1

4.44

4.80

pmol/l

—

131

(3044640) Blood type and Crossmatch panel - Blood

515

1.35

1.16

2.3

1.9

—

(3023511) Choriogonadotropin [Units/volume] in Urine

120

1.64

1.13

1.3

1.2

—

(3001019) Free T4 and TSH panel - Serum or Plasma

179

0.54

1.11

1.3

1.6

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

835

1.30

1.09

2.9

4.6

5.87

6.26

mmol/l

2.56

726

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

153

1406

1.33

1.03

4.0

4.2

14.32

14.27

pmol/l

0.12

147

1324

(3023103) Potassium [Moles/volume] in Serum or Plasma

174

1633

1.40

1.00

8.4

9.1

3.89

3.90

mmol/l

0.09

167

1568

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

1.78

0.98

1.5

1.4

—

(3019497) Choriogonadotropin.beta subunit free [Moles/volume] in Serum or Plasma

0.00

0.98

0.0

1.5

—

(3037522) Nuclear Ab [Titer] in Serum

263

1.40

0.96

1.5

1.4

1440.00

444.62

titre

—

(40760892) CBC W Ordered Manual Differential panel - Blood

432

0.72

0.95

3.2

4.0

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

382

1.33

0.93

1.7

1.8

0.72

0.75

mg/l

0.05

276

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

588

1.29

0.92

2.8

2.2

—

(3047826) Mullerian inhibiting substance [Mass/volume] in Serum or Plasma

1.65

0.83

1.5

1.3

7.34

3.10

ug/l

0.44

(3021960) Folate [Moles/volume] in Serum or Plasma

280

1.35

0.81

1.4

1.3

22.74

20.04

nmol/l

0.50

250

(3049717) Cytology report of Urine Cyto stain

1.84

0.79

2.5

2.0

—

(3021589) Normoblasts [#/volume] in Blood

747

0.79

5.6

7.2

0.00

e9/l

0.50

621

(3015916) Alpha-1-Fetoprotein [Units/volume] in Serum or Plasma

0.00

0.79

0.0

1.9

—

2.82

—

(3010421) pH of Blood

0.00

0.79

0.0

2.4

—

7.44

—

(3009466) Valproate [Moles/volume] in Serum or Plasma

0.00

0.78

0.0

6.1

—

385.23

—

(3009542) Hematocrit [Volume Fraction] of Blood

166

1743

0.76

0.77

9.3

10.5

39.10

40.26

0.80

118

1500

(3003191) Choriogonadotropin (pregnancy test) [Presence] in Serum or Plasma

168

1.41

0.75

2.2

1.7

—

(4035726)

100

1.54

0.75

1.2

1.4

—

(44816559) Phosphatidylethanol [Mass/volume] in Blood

1.60

0.72

1.1

1.2

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

528

1.25

0.72

3.7

6.0

1.22

mmol/l

0.01

487

(3021440) Promyelocytes/100 leukocytes in Blood

1.54

0.71

2.7

4.3

0.00

0.11

—

(3034603) RHD gene allele [Genotype] in Blood or Tissue by Molecular genetics method Nominal

1.73

0.70

1.4

—

(3002434) Lupus erythematosus deoxynucleoproteins IgG Ab [Units/volume] in Serum by Immunoassay

1.67

0.70

4.7

2.7

—

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

483

1.25

0.69

1.6

1.7

99.37

95.55

pmol/l

0.27

264

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

664

0.80

0.68

2.8

2.9

—

(3023368) Bacteria identified in Blood by Culture

270

1.31

0.68

2.5

3.7

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

127

0.62

0.66

2.0

1.6

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

129

0.61

0.66

2.0

1.7

—

(3006504) Eosinophils/100 leukocytes in Blood

786

1.21

0.64

5.4

5.5

2.66

2.67

0.03

738

(3002179) Metamyelocytes/100 leukocytes in Blood

1.49

0.63

2.7

4.1

0.57

0.36

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

141

0.62

1.6

1.4

—

(36033641) SARS-CoV-2 (COVID-19) Ag [Presence] in Upper respiratory specimen by Rapid immunoassay

1.62

0.62

1.1

1.8

—

(3019069) Monocytes/100 leukocytes in Blood

789

1.20

0.61

5.9

5.7

7.50

7.86

0.49

748

(3027315) Oxygen [Partial pressure] in Blood

0.00

0.60

0.0

2.5

—

9.93

—

(3013290) Carbon dioxide [Partial pressure] in Blood

0.00

0.60

0.0

2.5

—

4.90

—

(3012501) Base excess in Blood by calculation

0.00

0.60

0.0

2.5

—

2.97

—

(3042206) Streptococcus agalactiae Ag [Presence] in Vaginal fluid

0.54

0.57

1.2

1.1

—

(3013327) Hepatitis A virus IgM Ab [Presence] in Serum

1.60

0.55

1.3

1.1

—

(3017895) Helicobacter pylori Ab [Units/volume] in Serum

1.51

0.54

1.4

1.6

—

(3014148) Varicella zoster virus Ab [Titer] in Serum

1.55

0.53

1.2

—

(3037467) Urinalysis macro (dipstick) panel - Urine

129

1209

1.18

0.51

4.8

3.8

—

(40763571) Iron/Transferrin [Ratio] in Serum or Plasma

145

1.34

0.51

1.6

2.4

22.21

25.14

0.44

122

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

109

0.63

0.50

1.1

2.7

—

(3041096) Erythrocytes [Presence] in Urine by Automated

519

0.83

0.48

2.3

2.5

—

(3013707) Erythrocyte sedimentation rate by Westergren method

129

1213

1.17

0.47

5.2

3.4

7.60

7.93

mm/h

0.17

124

1138

(3025159) Blasts/100 leukocytes in Blood

1.41

0.47

2.8

4.2

0.00

—

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

322

1.22

0.47

1.2

1.3

7.28

7.91

u/ml

—

138

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

252

0.77

0.47

1.3

1.5

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.60

0.47

1.6

1.7

—

(3044491) Cholesterol non HDL [Mass/volume] in Serum or Plasma

186

0.73

0.46

1.2

1.3

—

(3017181) Myelocytes/100 leukocytes in Blood

103

1.39

0.46

2.8

4.0

0.50

0.63

—

(3007164) IgA [Mass/volume] in Serum or Plasma

465

1.19

0.46

1.7

1.3

1.95

2.06

g/l

0.23

298

(3022096) Basophils/100 leukocytes in Blood

756

1.16

0.46

5.3

5.7

0.70

0.66

0.35

707

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

295

1.22

0.45

2.2

1.9

—

(3015736) pH of Urine

669

0.86

0.43

2.7

—

(3000330) Specific gravity of Urine by Test strip

1.42

0.42

2.9

1.9

—

(36305247) Microscopic observation [Identifier] in Isolate by Gram stain

1.53

0.41

1.0

1.3

—

(44806118)

0.00

0.41

0.0

1.4

—

(44790047)

0.00

0.41

0.0

1.4

—

(44790048)

0.00

0.41

0.0

1.4

—

(3045683) HLA typing for celiac disease panel - Blood or Tissue

0.00

0.41

0.0

1.0

—

(44790049)

0.00

0.41

0.0

1.4

—

(3015183) Erythrocyte sedimentation rate

0.00

0.41

0.0

1.0

—

(3024928) Oxygen saturation in Venous blood

0.00

0.41

0.0

11.1

—

(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma

0.00

0.41

0.0

1.1

—

138.32

—

(3041806) Other cells [#/volume] in Blood by Manual count

0.00

0.41

0.0

1.8

—

(3005136) Cladosporium herbarum IgE Ab [Units/volume] in Serum

1.48

0.40

1.0

1.1

—

0.05

—

(3038177) Helicobacter pylori Ab [Presence] in Serum

1.48

0.40

1.0

1.1

—

(3050449) Albumin [Mass/time] in Urine collected for unspecified duration

0.00

0.40

0.0

2.1

—

123.11

—

(3010566) Parathyrin.intact [Moles/volume] in Serum or Plasma

0.00

0.40

0.0

2.7

—

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

181

1759

1.22

0.40

9.9

9.7

17.20

19.29

mg/l

0.44

140

1314

(3044290) Cell count panel - Cerebral spinal fluid

1.44

0.39

1.0

1.7

—

(3019150) Specific gravity of Urine by Refractometry

384

0.83

0.39

3.2

3.0

1.02

kg/l

—

(3046294) Neutrophil cytoplasmic Ab.classic [Titer] in Serum

0.00

0.39

0.0

1.2

—

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

377

1.18

0.38

2.4

2.0

—

(3026725) Estradiol (E2) [Moles/volume] in Serum or Plasma

1.34

0.38

2.0

1.7

0.26

0.42

nmol/l

—

(3011397) Hemoglobin [Presence] in Urine by Test strip

361

0.83

0.37

2.9

3.0

—

(3012544) pH of Venous blood

1.38

0.37

1.0

5.5

—

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

135

1.28

0.36

1.1

1.0

—

(3013139) Helicobacter pylori Ag [Presence] in Stool

108

1.32

0.36

1.1

1.2

—

(3036086) Jo-1 extractable nuclear Ab [Units/volume] in Serum by Immunoassay

1.48

0.36

1.5

1.2

—

(3016650) Hepatitis A virus Ab [Presence] in Serum

1.48

0.36

1.5

1.1

—

(3003694) ABO and Rh group [Type] in Blood

699

0.88

0.34

1.9

1.7

—

(3018010) Neutrophils/100 leukocytes in Blood

819

1.13

0.34

5.3

5.2

54.85

55.73

0.29

779

(3026008) Bacteria identified in Urine by Culture

448

1.15

0.34

2.4

2.1

—

(1002224) Polysomnography panel

0.67

0.33

1.0

1.1

—

(3013527) Hepatitis B virus core IgM Ab [Presence] in Serum

1.31

0.33

1.0

1.4

—

(3000494) Fungus identified in Specimen by Culture

174

1.23

0.33

1.1

1.4

—

(3003458) Phosphate [Moles/volume] in Serum or Plasma

128

1.27

0.33

4.2

7.4

0.97

1.01

mmol/l

0.27

117

(4010399)

1.34

0.32

1.3

1.4

—

(3008898) HLA-B27 [Presence]

130

0.76

0.30

1.0

1.1

—

(3013115) Eosinophils [#/volume] in Blood

875

1.11

0.29

5.3

6.1

0.19

0.17

e9/l

0.42

796

(3018095) Leukocytes [#/volume] in Urine

539

0.88

0.29

3.2

2.9

19.12

39.68

e6/l

0.82

339

(3006315) Basophils [#/volume] in Blood

836

1.11

0.29

5.3

5.5

0.04

e9/l

0.35

750

(3022621) pH of Urine by Test strip

103

1.28

0.29

2.0

2.2

—

(3034780) Angiotensin converting enzyme [Enzymatic activity/volume] in Serum or Plasma

1.33

0.28

1.2

2.2

29.50

40.68

u/l

—

(3001604) Monocytes [#/volume] in Blood

832

1.10

0.25

5.4

5.5

0.55

0.52

e9/l

0.51

748

(1761868) Lipid panel - Serum or Plasma

674

0.91

0.23

2.0

2.1

—

(4306422)

1.32

0.23

1.0

1.1

—

(3012220) Varicella zoster virus IgM Ab [Presence] in Serum by Immunoassay

1.32

0.23

1.2

1.1

—

(3014959) Toxoplasma gondii IgG Ab [Units/volume] in Serum

1.29

0.23

2.2

2.9

—

(3002030) Lymphocytes/100 leukocytes in Blood

825

1.09

0.23

5.6

5.4

31.31

30.41

0.33

785

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

1.26

0.22

1.6

1.3

—

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

481

1.11

0.22

3.3

2.7

—

(3020044) Glucose [Moles/volume] in Cerebral spinal fluid

1.22

0.22

1.0

1.6

3.66

3.53

mmol/l

—

(44816893) Food Allergen Mix 50 (Kiwi+Pineapple+Banana+Mango) IgE Ab [Units/volume] in Serum by Multidisk

0.00

0.21

0.0

1.1

—

(3029075) Extractable nuclear Ab panel - Serum

0.00

0.21

0.0

1.0

—

(3033306) Mononuclear cells/100 leukocytes in Cerebral spinal fluid

0.00

0.21

0.0

1.0

—

(3034426) Prothrombin time (PT)

0.00

0.21

0.0

1.2

—

(3042299) inFLIXimab [Mass/volume] in Serum or Plasma

0.00

0.21

0.0

6.8

—

7.10

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.2

—

(3015635) Cytomegalovirus IgM Ab [Units/volume] in Serum or Plasma

1.17

0.21

1.0

1.1

—

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

155

0.83

0.21

2.2

1.7

—

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.2

—

(3048402) Erythrocytes [#/area] in Urine sediment by Automated count

0.00

0.21

0.0

1.6

—

17.41

—

(3028271) Lactate [Moles/volume] in Capillary blood

0.00

0.21

0.0

1.7

—

1.81

—

(44813793)

0.00

0.21

0.0

1.2

—

(3039443) Prostate specific Ag panel - Serum or Plasma

0.00

0.21

0.0

1.6

—

(3017732) Neutrophils [#/volume] in Blood

136

1.19

0.21

1.4

2.3

3.45

4.30

e9/l

1.07

124

(3051014) Leukocytes [#/area] in Urine sediment by Automated count

0.00

0.20

0.0

1.6

—

4.00

—

(40768793) Breast Pathology biopsy report

1.21

0.20

1.5

1.2

—

(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma

372

0.90

0.19

1.5

—

(3021337) Troponin I.cardiac [Mass/volume] in Serum or Plasma

233

1.13

0.18

2.5

2.7

17.82

243.45

ng/l

1.20

104

(3010521) Mycoplasma pneumoniae IgM Ab [Presence] in Serum by Immunoassay

1.17

0.18

1.3

1.1

—

(3029937) Albumin [Presence] in Urine by Test strip

442

0.91

0.18

2.7

3.2

0.00

0.01

estimate

0.50

172

(3003327) Ova and parasites identified in Stool by Light microscopy

1.23

0.17

2.2

1.8

—

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

523

0.92

0.17

1.8

1.5

—

(3019832) Treponema pallidum Ab [Presence] in Serum

557

1.08

0.17

1.8

1.7

—

(36304419) Bacteria [Presence] in Urine

399

0.91

0.16

2.5

2.3

—

(40758558) Short blood count panel - Blood

398

0.91

0.15

5.5

6.3

—

(3028707) Methadone [Presence] in Urine by Screen method

1.13

0.15

8.8

1.6

—

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

208

1.12

0.14

2.6

2.1

1.92

4.00

e6/l

1.39

109

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

218

1.11

0.14

2.7

2.1

0.23

0.76

e6/l

1.95

120

(3019145) Choriogonadotropin.beta subunit free [Mass/volume] in Serum or Plasma

222

0.89

0.14

1.4

1.5

—

(46237023) Hepatitis B virus core and surface Ab and surface Ag panel - Serum

1.20

0.14

1.5

1.4

—

(40761535) Cells panel - Urine sediment

0.82

0.14

5.1

3.0

—

(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection

0.80

0.14

1.9

1.5

—

(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma

138

0.86

0.13

1.7

1.5

—

(1001926) Buprenorphine [Presence] in Urine by Screen method

133

1.14

0.12

5.9

1.5

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

291

0.92

0.12

1.7

2.1

—

(3050129) First trimester maternal screen panel - Serum or Plasma

250

1.09

0.11

1.6

1.5

—

(3016879) Cocaine [Presence] in Urine

163

1.11

0.11

5.2

1.6

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

329

1.08

0.11

1.3

13.42

21.86

iu/ml

—

(3020682) Albumin/Creatinine [Ratio] in Urine

280

1.08

0.11

3.4

4.2

5.37

16.01

mg/mmol

1.11

185

(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture

173

1.11

0.11

1.8

1.6

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

146

0.88

0.11

2.3

4.0

—

(3022145) Colonoscopy Study observation

164

1.11

0.10

1.3

—

(40762366) Oxygen capacity [Volume Fraction] in Arterial blood

1.09

0.09

10.2

20.1

—

(3042936) Bacteria identified in Isolate by Culture

194

1.09

0.09

1.5

2.4

—

(3013603) Prostate specific Ag [Mass/volume] in Serum or Plasma

1.14

0.09

3.3

3.1

0.99

1.28

ug/l

0.48

(3019060) Gas panel - Arterial blood

1.09

0.09

1.0

13.3

—

(3007853) Bacteria identified in Skin by Aerobe culture

175

1.09

0.09

1.4

1.5

—

(3015171) Extractable nuclear Ab [Units/volume] in Serum

0.82

0.07

1.2

1.4

—

1.94

—

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

850

1.04

0.07

4.3

4.1

—

(3027944) Amphetamines [Presence] in Urine

173

0.92

0.07

2.0

1.6

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.13

0.07

1.2

1.5

—

(3025941) Bacteria identified in Stool by Culture

109

1.11

0.06

1.2

—

(3000492) Spirometry study

162

0.92

0.06

1.4

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

157

1554

1.04

0.06

6.7

7.5

96.38

97.02

ml/min/173m2

0.18

139

1238

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

596

0.96

0.06

1.6

1.7

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

977

0.97

0.06

7.9

8.3

4.24

3.95

e9/l

0.36

852

(3035350) Ketones [Presence] in Urine by Test strip

843

0.97

0.04

2.7

2.9

0.00

estimate

0.00

169

(3012516) Albumin [Mass/volume] in Urine

270

0.96

0.03

3.2

3.4

26.48

108.81

mg/l

1.73

177

(3008230) Borrelia burgdorferi IgM Ab [Units/volume] in Serum

137

0.95

0.01

2.2

—

19.25

—

(3000764) Benzodiazepines [Presence] in Urine

173

1.04

0.01

5.2

1.6

—

(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma

657

0.98

0.01

2.2

74.00

72.61

nmol/l

0.17

613

(3028300) Cannabinoids [Presence] in Urine

174

1.04

0.00

5.3

1.6

—

(3027008) Opiates [Presence] in Urine

174

1.04

0.00

5.2

1.6

—

(3019198) Lymphocytes [#/volume] in Blood

874

1.01

0.00

5.5

2.34

2.03

e9/l

0.51

801

(3011288) Drugs identified in Urine by Screen method

116

1.04

0.00

14.1

1.9

—

(3016888) Borrelia burgdorferi IgG Ab [Units/volume] in Serum

126

1.03

0.00

1.2

—

28.44

—

(3008714) Choriogonadotropin [Multiple of the median] adjusted in Serum or Plasma

209

1.01

0.00

1.4

—

(3049207) Fetal Trisomy 21 risk [Likelihood] Based on maternal age

209

1.01

0.00

1.4

—

(3021601) Nitrite [Presence] in Urine by Test strip

839

1.00

0.00

3.8

4.1

0.00

estimate

0.00

175

(3030467) Casts [#/volume] in Urine by Automated count

385

1.02

0.00

2.4

2.3

0.12

0.26

e6/l

0.95

279

(3009261) Glucose [Presence] in Urine by Test strip

855

1.01

0.00

2.7

3.0

0.00

estimate

0.00

165

(3002582) Erythrocytes [#/volume] in Urine

428

1.01

0.00

2.6

2.5

16.23

44.55

e6/l

1.09

315

(3015377) Calcium [Moles/volume] in Serum or Plasma

442

0.99

0.00

2.4

3.2

2.35

mmol/l

0.01

402

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

0.0

1.6

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.0

—

(3016845) Adenovirus Ag [Presence] in Specimen by Immunofluorescence

0.00

0.0

1.0

—

(3007844) Epstein Barr virus capsid IgM Ab [Units/volume] in Serum by Immunoassay

1.00

0.00

1.2

—

(42868414) European tick borne encephalitis virus IgM Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.5

—

(42869547) Procollagen type III.N-terminal propeptide [Mass/volume] in Serum

0.00

0.0

1.1

—

7.12

—

(3027544) Mycobacterium sp identified in Sputum by Organism specific culture

0.00

0.0

3.1

—

(43055089) Myosin Ab [Presence] in Serum or Plasma by Immunoblot

0.00

0.0

1.0

—

(3025378) Microscopic observation [Identifier] in Cervix by Cyto stain

0.00

0.0

1.1

—

(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3035320) C reactive protein [Mass/volume] in Body fluid

0.00

0.0

1.6

—

(40760109) Toxoplasma gondii IgG Ab avidity [Ratio] in Serum by Immunoassay

0.00

0.0

1.3

—

(3027545) Mycoplasma pneumoniae Ab [Presence] in Serum by Immunoassay

1.02

0.00

1.3

—

(3036782) Glucose [Moles/volume] in Pleural fluid

0.00

0.0

1.1

—

5.34

—

(3002619) Bacteria identified in Specimen by Culture

0.00

0.0

1.0

—

(42868417) European tick borne encephalitis virus IgG Ab [Presence] in Serum by Immunoassay

0.00

0.0

1.6

—

(3045066) Thymidine kinase [Enzymatic activity/volume] in Serum

0.00

0.0

1.2

—

11.95

—

(3028531) Enolase.neuron specific [Mass/volume] in Serum or Plasma

0.00

0.0

2.7

—

15.56

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

0.0

1.0

—

(40758990) Choriogonadotropin.beta subunit [Mass/volume] in Serum or Plasma

0.00

0.0

1.1

—

(44806071)

0.00

0.0

1.0

—

(3030429) Borrelia sp DNA [Identifier] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3014300) Beta 2 glycoprotein 1 IgM Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(46235831) Pregnancy associated plasma protein A [Multiple of the median] adjusted in Serum or Plasma

210

1.00

0.00

1.4

—

(40761536) Microorganisms panel - Urine sediment

160

1.00

0.00

2.0

3.1

—

(3035947) Staphylolysin Ab [Units/volume] in Serum

0.00

0.0

1.2

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(44817194) Complement alternate pathway AH50 actual/normal in Serum by Immunoassay

0.00

0.0

1.0

—

96.00

—

(3013566) Clostridioides difficile [Presence] in Stool by Organism specific culture

0.00

0.0

2.0

—

(3020650) Glucose [Presence] in Urine

0.00

0.0

1.5

—

(37021073) Hepatitis C virus genotype in Serum or Plasma by Sequencing

0.00

0.0

1.0

—

(3038769) Chlamydophila pneumoniae IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.0

—

17.16

—

(3018921) Toxoplasma gondii IgA Ab [Units/volume] in Serum

0.00

0.0

1.3

—

(3011648) Oxygen content in Venous blood

0.00

0.0

24.5

—

12.28

—

(3026048) Bordetella pertussis IgG Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3012202) Varicella zoster virus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3014043) Spermatozoa Nonprogressive/100 spermatozoa in Semen

0.00

0.0

4.3

—

(40761995) Spermatozoa Progressive [#/volume] in Semen

0.00

0.0

2.2

—

(3037826) lamoTRIgine [Moles/volume] in Serum or Plasma

0.00

0.0

3.0

—

17.72

—

(3018993) Complement total hemolytic CH100 [Units/volume] in Serum or Plasma

0.00

0.0

1.0

—

(3001684) Respiratory syncytial virus Ag [Presence] in Specimen

0.00

0.0

1.0

—

(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

4.0

—

(40763531) Fetal Nuchal fold [Multiple of the median] Thickness adjusted for maternal weight

210

1.00

0.00

1.4

—

(3012565) Volume of 24 hour Urine

0.00

0.0

1.8

—

1639.00

—

(3027231) Wheat IgE Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3004446) Plasmodium sp identified in Blood by Light microscopy

0.00

0.0

2.6

—

(43055361) Metamyelocytes/Leukocytes [Pure number fraction] in Blood by Manual count

0.00

0.0

1.8

—

(3005011) Chlamydia sp Ab [Titer] in Serum

0.00

0.0

1.6

—

(3022411) Androstenedione [Moles/volume] in Serum or Plasma

0.00

0.0

1.0

—

7.18

—

(3028009) Chlamydia trachomatis IgG Ab [Units/volume] in Serum

0.00

0.0

1.0

—

(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

4.0

—

(3032868) Hemoglobin electrophoresis panel in Blood

0.00

0.0

1.9

—

(3045142) Bone marrow Pathology biopsy report

0.00

0.0

1.3

—

(3048929) Epstein Barr virus Ab [Presence] in Serum

0.97

0.00

1.2

—

Mortality – FinRegistry

↥

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

Relationships between endpoints

↥

Index endpoint: VWXY20_CONTACT_W_HYPODE_NEEDLE – Contact with hypodermic needle

GWS hits: -

This endpoint is excluded from FinRegistry analyses (omitted endpoint).

≡ Risteys

FG R12 + FR

FinnGen R11 + FinRegistry

FinnGen R10 + FinRegistry

FinnGen R10

FinnGen R9

FinnGen R8

FinnGen R7

FinnGen R6

FinnGen R5

FinnGen R4

FinnGen R3

Contact with hypodermic needle

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

All original rules

Similar endpoints

Case counts by codes

Upset plot

Case counts by code for Contact with hypodermic needle (VWXY20_CONTACT_W_HYPODE_NEEDLE)

Summary Statistics

-FinRegistry-

-FinnGen-

Key figures

-FinnGen-

Age distribution of first events

-FinnGen-

Year distribution of first events

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Relationships between endpoints