No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
144 |
4. Check minimum number of eventsNone |
144 |
5. Include endpointsNone |
144 |
6. Filter based on genotype QC (FinnGen only) |
124 |
Control definitions (FinnGen only)
- Control exclude
- AB1_SEXUAL_TRANSMISSION
Extra metadata
- Level in the ICD hierarchy
- 4
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Other and unspecified syphilis
based on the number of shared cases.
Similar with more cases:
- Infections with a predominantly sexual mode of transmission
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
- Any prescribed medicine buy
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 124 | 30 | 94 |
| Unadjusted period prevalence (%) | 0.04 | 0.01 | 0.04 |
| Median age at first event (years) | 44.84 | 38.74 | 46.79 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 144
- Matched controls
- 1440
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A53.9
ICD-10 Finland
Syphilis, unspecified
+∞
118.7
97
*
Z11.3
ICD-10 Finland
Special screening examination for infections with a predominantly sexual mode of transmission
33.5
96.2
74
44
WW200
NOMESCO Finland
Immunization
37.4
71.6
48
19
B23.1
ICD-10 Finland
HIV disease resulting in (persistent) generalized lymphadenopathy
125.2
42.6
44
5
Y25
ICPC
Fear sexually transm disease male
14.6
34.9
35
31
A56.3
ICD-10 Finland
Chlamydial infection of anus and rectum
+∞
34.8
32
*
A51.0
ICD-10 Finland
Primary genital syphilis
+∞
33.7
31
*
A53.0
ICD-10 Finland
Latent syphilis, unspecified as early or late
+∞
32.5
30
*
B24
ICD-10 Finland
Unspecified human immunodeficiency virus [HIV] disease
71.3
21.6
24
*
A54.6
ICD-10 Finland
Gonococcal infection of anus and rectum
+∞
21.4
20
*
WYA30
NOMESCO Finland
Treatment of a patient needing special arrangements
7.3
20.4
35
61
A51.9
ICD-10 Finland
Early syphilis, unspecified
+∞
19.2
18
*
A51.3
ICD-10 Finland
Secondary syphilis of skin and mucous membranes
+∞
19.2
18
*
A54.5
ICD-10 Finland
Gonococcal pharyngitis
217.1
19.0
19
*
Z2221
NOMESCO Finland
Medical doctor
4.7
18.5
63
203
Z3231
NOMESCO Finland
Registered nurse
4.4
17.3
67
236
A54.0
ICD-10 Finland
Gonococcal infection of lower genitourinary tract without periurethral or accessory gland abscess
+∞
14.8
14
*
Z71.8
ICD-10 Finland
Other specified counselling
3.9
14.2
67
265
Z21
ICD-10 Finland
Asymptomatic human immunodeficiency virus [HIV] infection status
82.9
13.9
15
*
Y70
ICPC
Syphilis male
+∞
13.8
13
*
A56.0
ICD-10 Finland
Chlamydial infection of lower genitourinary tract
29.1
13.7
18
7
Z25.1
ICD-10 Finland
Need for immunization against influenza
10.2
12.7
25
29
09710
ICD-8 Finland
Other syphilis and not specified, Latent syphilis, unspecified
+∞
11.6
11
*
A63.0
ICD-10 Finland
Anogenital (venereal) warts
15.9
10.8
17
12
Z29.2
ICD-10 Finland
Other prophylactic chemotherapy
118.3
10.6
11
*
B23.8
ICD-10 Finland
HIV disease resulting in other specified conditions
106.8
9.5
10
*
B23.0
ICD-10 Finland
Acute HIV infection syndrome
+∞
9.5
9
*
L30.9
ICD-10 Finland
Dermatitis, unspecified
3.4
9.2
41
151
A52.1
ICD-10 Finland
Symptomatic neurosyphilis
+∞
8.4
8
*
WX110, ,
SPAT
4.6
8.3
21
51
J01MA02
ATC
ciprofloxacin; systemic
2.8
8.3
64
319
TAB00
NOMESCO Finland
Lumbar puncture
7.1
8.0
19
30
UJF30
NOMESCO Finland
Ileoscopy through colon
4.3
7.6
21
55
A56.4
ICD-10 Finland
Chlamydial infection of pharynx
+∞
7.3
7
*
A53
ICD-10 Finland
Other and unspecified syphilis
+∞
7.3
7
*
A09
ICD-10 Finland
Other gastroenteritis and colitis of infectious and unspecified origin
2.9
6.8
38
158
ZX114
NOMESCO Finland
Intramuscular
11.8
6.4
11
10
A51.5
ICD-10 Finland
Early syphilis, latent
+∞
6.3
6
*
A52.9
ICD-10 Finland
Late syphilis, unspecified
+∞
6.3
6
*
A52.2
ICD-10 Finland
Asymptomatic neurosyphilis
+∞
6.3
6
*
Z76.0
ICD-10 Finland
Issue of repeat prescription
2.7
6.2
43
199
Z2446
NOMESCO Finland
Social worker
4.2
6.2
17
44
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
47
11
62.95
81.31
16.5
10.6
817.14
65.60
u/ml
—
29
5
69
64
19.78
69.97
7.7
1.8
—
—
—
0
0
70
70
18.51
67.70
8.1
2.0
—
—
—
0
0
82
193
8.55
38.12
6.5
2.0
—
—
—
0
0
76
177
7.98
35.26
5.9
1.9
—
—
—
0
0
51
138
5.17
18.58
16.2
5.5
0.96
1.00
mmol/l
0.73
51
129
90
530
2.86
8.53
5.7
4.3
0.00
0.00
estimate
—
6
101
90
535
2.82
8.29
3.3
3.1
0.00
0.01
estimate
—
6
103
96
596
2.83
8.03
4.2
5.3
6.32
6.73
mmol/l
1.44
90
558
100
641
2.83
7.74
12.9
10.5
3.41
4.29
e9/l
3.96
87
563
39
162
2.93
6.96
2.9
2.3
2.08
1.74
e6/l
0.10
11
83
12
14
9.23
6.19
1.2
1.1
—
—
—
0
0
62
346
2.39
5.97
3.0
2.7
—
—
—
0
0
38
171
2.66
5.75
3.0
2.3
1.57
0.95
e6/l
—
10
93
13
22
6.38
5.36
1.1
1.1
12.00
3.80
e6/l
—
8
15
13
22
6.38
5.36
1.1
1.1
73.25
449.27
e6/l
—
8
15
52
281
2.33
5.28
3.3
2.4
0.10
0.43
e6/l
2.17
36
206
17
51
3.65
5.06
1.6
1.3
—
—
—
0
0
57
340
2.12
4.41
1.8
1.7
93.25
96.60
pmol/l
0.23
29
167
37
186
2.33
4.34
2.9
2.9
133.25
123.90
ng/l
0.03
28
137
127
1072
2.56
3.44
15.8
11.1
88.68
90.05
ml/min/173m2
0.30
108
866
119
982
2.22
3.32
21.6
14.7
13.17
14.47
%
8.91
119
967
34
185
2.10
3.24
1.4
1.4
21.38
20.94
nmol/l
0.08
28
156
7
12
6.07
3.06
1.1
2.7
—
—
—
0
0
12
37
3.44
3.01
2.4
1.5
—
—
—
0
0
5
5
10.29
3.00
1.0
1.0
—
—
—
0
0
8
17
4.92
2.96
1.3
1.1
—
—
—
0
0
7
15
4.85
2.63
3.1
1.9
—
—
—
0
0
39
246
1.80
2.38
1.4
1.2
0.70
1.24
u/ml
—
6
73
128
1136
2.14
2.21
12.5
12.4
31.72
23.32
mg/l
1.37
104
892
6
18
3.43
1.76
1.2
1.4
—
—
—
0
0
28
175
1.74
1.74
1.7
1.7
2.33
3.09
mg/l
1.01
22
152
12
59
2.13
1.48
1.0
1.0
—
—
—
0
0
32
217
1.61
1.48
1.9
2.3
—
—
—
0
0
15
81
1.95
1.46
1.1
3.5
66.83
72.32
ml/min/173m2
—
6
38
102
888
1.51
1.42
4.1
3.2
—
—
—
0
0
12
61
2.06
1.37
1.3
1.2
89.88
202.54
u/ml
1.22
12
51
8
34
2.43
1.31
1.0
1.1
—
—
—
0
0
8
34
2.43
1.31
1.0
1.1
—
—
—
0
0
35
471
0.66
1.31
3.6
3.7
1.94
1.69
ug/l
0.30
30
431
12
63
1.99
1.27
1.5
1.3
—
—
—
0
0
5
20
2.55
1.16
1.6
1.5
—
—
—
0
0
5
20
2.55
1.16
1.6
1.5
—
—
—
0
0
106
949
1.44
1.12
4.2
4.0
1.81
1.90
mu/l
0.41
101
874
12
67
1.86
1.08
1.9
1.7
—
—
—
0
0
9
47
1.97
1.04
3.1
2.6
21.33
24.53
mmol/l
—
9
47
86
752
1.36
0.99
3.1
3.4
14.13
14.74
pmol/l
1.48
78
684
14
86
1.70
0.95
2.1
2.5
0.26
0.23
g/l
0.55
14
78
6
27
2.27
0.94
1.0
3.6
26.67
30.44
u/ml
—
6
27
32
243
1.41
0.87
2.2
1.5
—
—
—
0
0
28
366
0.71
0.86
2.9
3.6
24.42
21.26
%
0.34
13
132
54
452
1.31
0.80
2.6
2.5
—
—
—
0
0
30
382
0.73
0.78
3.4
3.2
35.08
44.21
ng/l
0.21
17
238
5
23
2.21
0.77
1.0
1.3
273.40
226.45
u/ml
—
5
11
5
26
1.96
0.71
1.2
1.3
—
—
—
0
0
10
62
1.66
0.67
1.3
1.2
—
—
—
0
0
33
277
1.25
0.47
4.4
3.7
10.90
5.50
mg/mmol
0.25
23
188
7
49
1.45
0.46
1.1
1.7
—
—
—
0
0
9
127
0.69
0.46
6.1
7.5
—
—
—
0
0
12
87
1.41
0.44
5.3
3.3
5.55
5.82
kpa
0.43
12
87
5
31
1.63
0.43
1.6
1.4
—
—
—
0
0
0
16
0.00
0.41
0.0
2.0
—
—
—
0
0
0
17
0.00
0.41
0.0
1.7
—
—
—
0
0
0
18
0.00
0.40
0.0
1.8
—
—
—
0
0
0
18
0.00
0.40
0.0
1.9
—
—
—
0
0
0
18
0.00
0.40
0.0
1.7
—
—
—
0
0
13
168
0.75
0.38
1.1
1.2
45.13
26.40
iu/ml
—
6
48
118
1134
1.22
0.37
5.4
3.6
1.37
1.37
mmol/l
0.01
111
1058
14
110
1.30
0.33
1.4
1.6
—
—
—
0
0
135
1323
1.33
0.28
23.0
17.5
142.35
142.72
g/l
0.11
135
1306
135
1322
1.34
0.28
23.0
17.4
248.20
245.87
e9/l
0.20
135
1293
5
71
0.69
0.27
1.0
1.7
—
—
—
0
0
34
304
1.16
0.26
2.5
3.2
2.32
2.35
mmol/l
0.76
29
268
13
105
1.26
0.26
3.6
3.5
254.08
247.26
u/l
0.06
13
100
5
38
1.33
0.23
1.2
2.2
—
—
—
0
0
14
116
1.23
0.23
1.4
1.7
—
—
—
0
0
122
1190
1.17
0.22
6.6
4.2
2.83
2.89
mmol/l
0.34
117
1108
8
102
0.77
0.22
6.5
3.0
—
—
—
0
0
0
11
0.00
0.21
0.0
2.4
—
—
—
0
0
0
11
0.00
0.21
0.0
2.4
—
—
—
0
0
0
11
0.00
0.21
0.0
2.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
2.7
—
14.82
—
0
10
0
10
0.00
0.21
0.0
1.2
—
2.15
—
0
10
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
—
—
0
0
0
13
0.00
0.21
0.0
2.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.5
—
13.14
—
0
14
14
164
0.84
0.19
1.6
1.6
458.79
431.87
pmol/l
0.16
14
147
120
1174
1.13
0.17
6.4
3.9
1.29
1.36
mmol/l
1.13
114
1099
120
1175
1.13
0.16
6.3
3.9
4.55
4.71
mmol/l
1.17
114
1107
15
131
1.16
0.15
1.8
1.8
—
—
—
0
0
40
424
0.92
0.13
3.5
3.0
—
—
—
0
0
26
279
0.92
0.10
1.7
2.2
370.15
6745.07
umol/l
1.24
26
239
22
205
1.09
0.08
2.1
2.2
1.76
1.45
%
0.80
17
194
45
434
1.05
0.07
8.8
11.5
1.03
1.21
inr
—
8
140
17
158
1.09
0.06
1.4
1.9
—
—
—
0
0
26
269
0.96
0.03
2.5
2.4
0.71
0.69
ug/l
0.07
17
134
14
147
0.95
0.01
1.1
1.2
1.13
8.75
u/ml
—
6
64
23
233
0.98
0.00
2.8
3.0
2068.56
1131.90
ng/l
0.31
18
178
27
268
1.01
0.00
2.7
3.2
0.00
0.01
estimate
—
5
99
23
225
1.03
0.00
2.1
1.6
1.01
1.06
mg/l
0.06
16
169
0
6
0.00
0.00
0.0
1.2
—
11.75
—
0
6
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
53.83
—
0
6
0
6
0.00
0.00
0.0
1.3
—
201.67
—
0
6
0
6
0.00
0.00
0.0
1.2
—
—
—
0
0
8
80
1.00
0.00
1.3
2.1
6.16
6.54
ug/l
—
8
74
0
5
0.00
-0.00
0.0
1.6
—
36.86
—
0
5
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
6.4
—
141.25
—
0
8
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.6
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
205.57
—
0
7
0
5
0.00
-0.00
0.0
3.6
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
1497.38
—
0
8
0
9
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.6
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
24.54
—
0
5
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.6
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_SYPHILIS_NOS_WIDE – Other and unspecified syphilis
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).