No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
73 |
4. Check minimum number of eventsNone |
73 |
5. Include endpointsNone |
73 |
6. Filter based on genotype QC (FinnGen only) |
71 |
Control definitions (FinnGen only)
- Control exclude
- AB1_INTESTINAL_INFECTIONS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Cholera
based on the number of shared cases.
Similar with more cases:
- Intestinal infectious diseases
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
- Any prescribed medicine buy
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 71 | 35 | 36 |
| Unadjusted period prevalence (%) | 0.01 | 0.01 | 0.02 |
| Median age at first event (years) | 53.68 | 43.33 | 63.74 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 73
- Matched controls
- 730
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A00.0
ICD-10 Finland
Cholera due to Vibrio cholerae 01, biovar cholerae
+∞
25.5
23
*
A00
ICD-10 Finland
Cholera
+∞
24.3
22
*
A00.9
ICD-10 Finland
Cholera, unspecified
+∞
19.7
18
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
35
187
2.67
4.07
5.1
3.0
—
—
—
0
0
30
153
2.63
3.78
4.4
3.0
2.54
0.30
e6/l
0.46
22
105
35
195
2.53
3.65
3.7
3.3
18.71
31.34
ng/l
0.90
21
128
41
248
2.49
3.56
14.6
12.6
1.13
1.25
inr
0.64
15
86
36
217
2.30
3.02
2.9
2.4
79.02
74.32
nmol/l
0.33
30
191
19
86
2.63
2.95
3.8
3.0
0.73
2.85
e6/l
—
7
41
5
6
8.82
2.79
2.4
1.2
—
—
—
0
0
10
30
3.69
2.72
14.7
6.1
26.21
24.38
mmol/l
—
10
30
21
106
2.38
2.59
1.8
1.5
1.47
1.04
mg/l
0.33
12
83
19
92
2.44
2.56
3.3
2.8
2.19
0.69
e6/l
—
8
47
26
146
2.21
2.50
2.5
2.8
1368.46
1081.40
ng/l
0.24
20
116
6
12
5.34
2.45
3.7
1.3
—
—
—
0
0
13
53
2.77
2.44
15.8
9.5
-1.45
0.86
mmol/l
—
6
43
23
127
2.18
2.28
4.7
2.1
—
—
—
0
0
9
30
3.27
2.23
3.3
1.1
—
—
—
0
0
6
14
4.57
2.20
1.5
1.2
—
—
—
0
0
67
577
2.96
2.09
28.6
12.2
33.12
20.19
mg/l
1.71
57
467
6
15
4.26
2.08
2.0
1.3
—
—
—
0
0
13
58
2.51
2.05
1.8
1.6
—
—
—
0
0
26
158
2.00
1.98
2.0
2.2
195.33
295.55
u/l
0.38
21
151
17
88
2.21
1.95
2.6
1.7
—
—
—
0
0
5
12
4.39
1.85
1.2
1.0
—
—
—
0
0
39
282
1.82
1.71
5.2
3.8
0.15
0.00
estimate
0.47
13
59
25
157
1.90
1.71
5.9
3.7
0.00
0.00
estimate
-0.00
13
53
36
256
1.80
1.65
10.7
6.4
1.22
1.22
mmol/l
0.27
27
217
38
276
1.79
1.61
6.7
5.3
0.00
0.00
estimate
-0.00
13
60
54
437
1.91
1.59
4.3
3.9
15.31
14.84
pmol/l
0.60
47
390
12
59
2.24
1.54
2.0
1.7
—
—
—
0
0
11
52
2.31
1.53
20.5
9.8
103.09
104.56
mmol/l
0.26
11
52
5
17
3.08
1.38
1.6
1.4
—
—
—
0
0
29
204
1.70
1.32
2.6
2.0
82.88
96.13
pmol/l
0.93
13
99
8
35
2.44
1.31
1.5
1.5
—
—
—
0
0
37
279
1.66
1.29
5.4
3.7
0.00
0.00
estimate
-0.00
13
64
43
340
1.64
1.23
8.9
4.2
6.45
6.57
mmol/l
0.16
38
309
6
26
2.42
1.21
2.2
4.1
22.92
24.22
mmol/l
—
6
26
30
218
1.64
1.19
5.0
4.0
—
—
—
0
0
34
256
1.61
1.17
4.0
2.4
—
—
—
0
0
20
131
1.73
1.16
3.1
1.8
2.57
2.79
mg/l
0.29
13
115
15
90
1.84
1.15
1.8
1.7
1269.11
1232.69
nmol/l
—
9
67
9
45
2.14
1.10
1.8
1.6
—
—
—
0
0
63
563
1.87
1.01
4.8
4.2
4.38
4.56
mmol/l
0.65
57
523
61
545
1.73
0.91
29.2
12.0
87.81
83.55
ml/min/173m2
0.76
55
438
6
30
2.09
0.89
1.0
1.2
—
104.43
iu/ml
—
0
7
10
57
1.87
0.89
3.9
3.1
—
—
—
0
0
42
348
1.49
0.86
14.6
9.9
4.66
4.18
e9/l
0.39
34
311
62
559
1.72
0.86
4.7
4.2
1.34
1.45
mmol/l
1.17
56
513
6
32
1.95
0.84
25.0
12.3
1.33
1.56
%
—
6
32
60
538
1.65
0.83
5.0
4.5
1.93
1.84
mu/l
0.21
53
486
22
161
1.52
0.81
5.0
4.1
14.32
16.51
mg/mmol
0.08
16
102
63
574
1.71
0.79
5.1
4.7
2.54
2.71
mmol/l
0.72
56
526
5
24
2.16
0.76
1.0
1.3
—
—
—
0
0
9
56
1.69
0.76
1.2
1.5
—
—
—
0
0
20
151
1.45
0.63
2.6
1.6
1.07
1.38
mmol/l
1.19
15
132
46
404
1.37
0.59
3.7
3.3
—
—
—
0
0
12
82
1.55
0.59
4.8
2.5
12.78
16.28
umol/l
0.84
12
73
17
126
1.46
0.58
1.8
1.5
—
—
—
0
0
57
520
1.44
0.57
7.4
5.3
40.26
39.40
mmol/mol
0.34
51
490
9
62
1.51
0.56
10.2
5.2
—
—
—
0
0
14
101
1.48
0.54
1.1
1.2
14.52
24.42
iu/ml
—
6
32
13
94
1.47
0.50
1.2
1.3
49.67
14.07
u/ml
—
7
42
58
538
1.38
0.45
5.5
3.8
1.46
1.25
mmol/l
0.82
53
489
12
88
1.44
0.43
1.9
2.2
—
—
—
0
0
5
32
1.60
0.43
29.8
12.3
0.64
0.65
%
—
5
32
8
60
1.37
0.42
3.9
2.1
9.50
4.79
umol/l
—
8
48
12
95
1.31
0.28
1.9
2.4
—
—
—
0
0
0
11
0.00
0.21
0.0
1.6
—
—
—
0
0
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
9
78
1.18
0.16
1.1
1.5
—
—
—
0
0
16
151
1.08
0.03
3.5
4.3
28.27
23.35
%
—
8
73
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.7
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.3
—
14.38
—
0
6
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
3.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.5
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.9
—
8.07
—
0
7
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_CHOLERA_WIDE – Cholera
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).