Benign neoplasm: Female genital organ, unspecified

CD2_BENIGN_FEMALE_GEN_NOS

muscle cancer: A musculoskeletal system cancer that is located_in muscle.

Endpoint definition

↥

Endpoint definition steps	FinnGen
Phenotype data	520210
1. Apply sex-specific rule only females	293373
2. Check conditions None	293373
3. Check pre-conditions, main-only, mode, registry filters Registry filters: Hospital discharge: ICD-10 — D28.9& Hospital discharge: ICD-9 — 221[8-9] Hospital discharge: ICD-8 — 2219 Cause of death: ICD-10 — D28.9& Cause of death: ICD-9 — 221[8-9] Cause of death: ICD-8 — 2219 2 out of 7 registries used, show all original rules.	108
4. Check minimum number of events None	108
5. Include endpoints None	108
6. Filter based on genotype QC (FinnGen only)	108

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy: 3
First used in FinnGen datafreeze: DF2
Parent code in ICD-10: D28
Name in latin: Neoplasma benignum organi genitalis feminini non specificati

NAME	CD2_BENIGN_FEMALE_GEN_NOS
CONTROL_EXCLUDE
CONTROL_PRECONDITIONS
CONTROL_CONDITIONS
SEX	2
INCLUDE
PRE_CONDITIONS
CONDITIONS
OUTPAT_ICD
OUTPAT_OPER
HD_MAINONLY
HD_ICD_10_ATC
HD_ICD_10	D289
HD_ICD_9	221[8-9]
HD_ICD_8	2219
HD_ICD_10_EXCL
HD_ICD_9_EXCL
HD_ICD_8_EXCL
COD_MAINONLY
COD_ICD_10	D289
COD_ICD_9	221[8-9]
COD_ICD_8	2219
COD_ICD_10_EXCL
COD_ICD_9_EXCL
COD_ICD_8_EXCL
OPER_NOM
OPER_HL
OPER_HP1
OPER_HP2
KELA_REIMB
KELA_REIMB_ICD
KELA_ATC_NEEDOTHER
KELA_ATC
KELA_VNRO_NEEDOTHER
KELA_VNRO
CANC_TOPO
CANC_TOPO_EXCL
CANC_MORPH
CANC_MORPH_EXCL
CANC_BEHAV

Similar endpoints

↥

List of similar endpoints to Benign neoplasm: Female genital organ, unspecified based on the number of shared cases.

Similar with more cases:

Similar with less cases:

Benign neoplasm: Female genital organ, unspecified

Case counts by codes

↥

FinnGen case counts by registry codes:

Upset plot

Full data table

Summary Statistics

↥

-FinRegistry-

Key figures

	All	Female	Male
Number of individuals
Whole population	995	995	-
Only index persons	837	837	-
Unadjusted period prevalence (%)
Whole population	0.03	0.03	-
Only index persons	0.03	0.03	-
Median age at first event (years)
Whole population	-	44.49	-
Only index persons	-	42.31	-

-FinnGen-

Key figures

	All	Female	Male
Number of individuals	108	108	-
Unadjusted period prevalence (%)	0.04	0.04	-
Median age at first event (years)	39.04	39.04	-

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS (R11)

↥

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log₁₀(p-value) ≥ 6.

Matched cohort

Matched cases
95: Matched controls
950

Code

Vocabulary

Description

Odds Ratio

-log₁₀(p)

N matched cases

N matched controls

D28.9

ICD-10 Finland

Benign neoplasm: Female genital organ, unspecified

+∞

65.3

22199

ICD-8 Finland

Benign neoplasm of other female genital organs, Unspecified site

+∞

30.9

2218X

ICD-9 Finland

Benign neoplasm of other female genital organs, Other specified sites of female genital organs

+∞

9.5

LFB10

NOMESCO Finland

Excision of lesion of vulva or perineum

20.5

7.8

LabWAS

↥

(ID) Name

N Cases

N Controls

-log₁₀(p)

cases

controls

cases

controls

unit

-log₁₀(p)

N cases

N controls

(40761536) Microorganisms panel - Urine sediment

2.40

2.58

5.0

3.7

—

(3022806) Fractional oxyhemoglobin in Capillary blood

5.70

2.58

1.5

2.7

90.7

89.2

—

(43054914) Glucose tolerance 2 hours panel - Serum or Plasma

110

2.13

2.25

1.8

1.9

—

(586526) SARS-CoV-2 (COVID-19) RNA [Presence] in Nasopharynx by NAA with probe detection

2.67

2.08

1.2

1.5

—

(3020321) Streptococcus agalactiae [Presence] in Vaginal fluid by Organism specific culture

3.24

2.06

2.1

1.5

—

(1002102) Choriogonadotropin.intact+Beta subunit [Mass/volume] in Serum or Plasma

3.49

2.00

1.9

1.5

—

(3037467) Urinalysis macro (dipstick) panel - Urine

663

1.80

1.90

3.7

4.6

—

(3009035) Cobalamin (Vitamin B12) [Moles/volume] in Serum or Plasma

181

1.82

1.89

2.1

1.8

440.5

492.9

pmol/l

0.53

149

(3027315) Oxygen [Partial pressure] in Blood

3.67

1.86

1.5

3.8

8.7

9.2

kpa

—

(3013290) Carbon dioxide [Partial pressure] in Blood

3.67

1.86

1.5

3.8

4.8

5.0

kpa

—

(21492888) Glucose tolerance 2 hours gestational panel - Serum or Plasma

3.18

1.83

1.6

1.5

—

(3019902) Methicillin resistant Staphylococcus aureus [Presence] in Specimen by Organism specific culture

2.01

1.67

3.2

3.6

—

(3000330) Specific gravity of Urine by Test strip

2.19

1.34

2.7

3.3

—

(3029937) Albumin [Presence] in Urine by Test strip

257

1.54

1.21

4.3

4.2

0.0

estimate

0.00

(3017766) Complement C4 [Mass/volume] in Serum or Plasma

0.00

1.17

0.0

1.5

—

0.2

—

(3000620) Complement C3 [Mass/volume] in Serum or Plasma

0.00

1.16

0.0

1.5

—

1.2

—

(40763086) Leukocyte esterase [Presence] in Urine by Automated test strip

375

1.45

1.06

4.7

3.9

—

(3014051) Protein [Presence] in Urine by Test strip

2.33

1.04

1.8

1.5

—

(3009261) Glucose [Presence] in Urine by Test strip

478

1.41

0.96

4.5

4.0

0.0

estimate

0.00

(3048689) Calprotectin [Mass/mass] in Stool

111

1.63

0.95

1.2

1.8

141.8

118.0

ug/g

0.15

(3035995) Alkaline phosphatase [Enzymatic activity/volume] in Serum or Plasma

728

1.45

0.88

7.1

7.0

73.1

76.8

u/l

0.63

662

(3022145) Colonoscopy Study observation

114

1.58

0.86

1.2

—

(3021960) Folate [Moles/volume] in Serum or Plasma

229

1.43

0.84

1.6

1.5

27.2

23.2

nmol/l

0.50

184

(3019284) Hepatitis B virus surface Ag [Presence] in Serum

150

1.50

0.81

1.5

1.6

—

(40771025) 25-Hydroxyvitamin D3+25-Hydroxyvitamin D2 [Moles/volume] in Serum or Plasma

419

1.36

0.81

2.6

2.3

76.9

77.9

nmol/l

0.09

368

(42868674) Cholesterol in HDL/Cholesterol.total [Molar ratio] in Serum or Plasma

116

1.55

0.80

4.6

4.5

34.8

34.4

—

(3022621) pH of Urine by Test strip

1.77

0.79

5.2

2.9

—

(3024891) Influenza virus A+B Ag [Presence] in Specimen

0.00

0.78

0.0

1.1

—

(3024135) Streptococcus.beta-hemolytic [Presence] in Throat by Organism specific culture

191

0.64

0.75

1.5

1.6

—

(3043109) Cytology report of Tissue fine needle aspirate Cyto stain

2.05

0.73

1.0

1.5

—

(3021601) Nitrite [Presence] in Urine by Test strip

473

1.33

0.73

6.0

5.5

0.0

estimate

0.00

(3016771) Amylase [Enzymatic activity/volume] in Serum or Plasma

300

1.35

0.72

2.2

55.4

54.0

u/l

0.10

270

(40768797) Stomach Pathology biopsy report

128

1.49

0.71

1.2

—

(3013721) Aspartate aminotransferase [Enzymatic activity/volume] in Serum or Plasma

301

1.35

0.71

2.1

2.6

30.8

28.3

u/l

0.24

288

(3035350) Ketones [Presence] in Urine by Test strip

475

1.32

0.70

3.9

0.0

estimate

0.00

(3041096) Erythrocytes [Presence] in Urine by Automated

283

1.35

0.69

4.8

3.5

—

(3013512) EKG study

275

1.34

0.67

5.6

3.7

—

(3005895) Myoglobin [Mass/volume] in Serum or Plasma

1.82

0.67

1.0

1.5

337.6

153.0

ug/l

—

(3019832) Treponema pallidum Ab [Presence] in Serum

104

1.51

0.67

1.7

1.6

—

(3026910) Gamma glutamyl transferase [Enzymatic activity/volume] in Serum or Plasma

588

1.31

0.66

3.0

43.6

42.2

u/l

0.07

543

(4035726)

1.51

0.62

1.4

—

(3015377) Calcium [Moles/volume] in Serum or Plasma

345

1.30

0.61

3.0

3.2

2.4

mmol/l

0.05

305

(3043362) Influenza virus B Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.61

0.0

1.2

—

(3046524) Influenza virus A Ag [Presence] in Nasopharynx by Immunoassay

0.00

0.61

0.0

1.2

—

(3042194) Human metapneumovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.60

0.0

1.4

—

(3017143) Hepatitis C virus Ab [Presence] in Serum

1.49

0.60

1.1

1.3

—

(3021589) Normoblasts [#/volume] in Blood

414

1.29

0.59

10.7

9.3

0.0

e9/l

0.50

340

(43534045) MCM6 gene c.-13910C>T and -13915T>G [Identifier] in Blood or Tissue by Molecular genetics method Nominal

1.52

0.59

1.0

—

(3021879) Hepatitis B virus core Ab [Presence] in Serum

1.52

0.55

1.1

1.3

—

(3045414) Leukocytes [Presence] in Urine

1.61

0.55

1.8

1.5

—

(3048816) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Blood

1.50

0.54

2.7

4.2

1.2

mmol/l

0.31

(3026008) Bacteria identified in Urine by Culture

332

1.27

0.52

2.5

3.1

—

(3029511) Human papilloma virus DNA [Presence] in Specimen by NAA with probe detection

1.53

0.52

1.5

—

(3001122) Ferritin [Mass/volume] in Serum or Plasma

420

1.26

0.51

3.2

2.7

88.0

78.1

ug/l

0.14

389

(3001079) Blood group antibody screen [Presence] in Serum or Plasma

450

1.25

0.51

3.2

3.9

—

(3001019) Free T4 and TSH panel - Serum or Plasma

1.59

0.50

1.3

2.1

—

(3016293) Bicarbonate [Moles/volume] in Serum or Plasma

1.59

0.50

1.4

4.2

24.5

25.5

mmol/l

—

(40764999) Glomerular filtration rate/1.73 sq M.predicted [Volume Rate/Area] in Serum, Plasma or Blood by Creatinine-based formula (CKD-EPI)

872

1.37

0.50

11.3

12.9

80.8

80.7

ml/min/173m2

0.01

707

(42870588) Differential panel, method unspecified - Blood

288

1.26

0.47

4.5

5.3

—

(3007164) IgA [Mass/volume] in Serum or Plasma

204

1.29

0.46

1.5

2.0

2.5

g/l

1.11

113

(3011397) Hemoglobin [Presence] in Urine by Test strip

206

1.28

0.43

2.9

3.9

—

(3019225) pH of Specimen

1.41

0.42

3.9

—

(3020287) Protein C actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.41

0.0

1.1

—

112.8

—

(3002482) Mycoplasma pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.41

0.0

1.5

—

(3049804) Myeloperoxidase IgG Ab [Units/volume] in Serum

0.00

0.41

0.0

1.0

—

(3044290) Cell count panel - Cerebral spinal fluid

0.00

0.41

0.0

1.3

—

(3031040) Bacteria [#/volume] in Urine by Automated count

659

1.23

0.41

4.8

—

341.8

—

(706163) SARS-CoV-2 (COVID-19) RNA [Presence] in Respiratory system specimen by NAA with probe detection

588

1.22

0.41

2.7

3.3

—

(44816559) Phosphatidylethanol [Mass/volume] in Blood

0.00

0.40

0.0

1.2

—

(3040853) Adenovirus DNA [Identifier] in Specimen by NAA with probe detection

0.00

0.39

0.0

1.4

—

(3011288) Drugs identified in Urine by Screen method

0.00

0.39

0.0

2.1

—

(3009041) Cardiolipin IgG Ab [Units/volume] in Serum by Immunoassay

0.00

0.39

0.0

1.0

—

4.2

—

(3000855) Microscopic observation [Identifier] in Vaginal fluid by Gram stain

0.00

0.39

0.0

1.8

—

(3021614) Rheumatoid factor [Units/volume] in Serum or Plasma

190

1.27

0.39

1.4

1.3

37.5

35.1

iu/ml

—

(3013707) Erythrocyte sedimentation rate by Westergren method

713

1.22

0.38

4.1

4.3

11.1

12.3

mm/h

0.54

637

(3018006) Microscopic observation [Identifier] in Cervix by Cyto stain.thin prep

230

0.79

0.36

1.6

1.4

—

(3007853) Bacteria identified in Skin by Aerobe culture

100

1.34

0.35

1.6

1.4

—

(36031861) Influenza virus A and B and SARS-CoV-2 (COVID-19) and Respiratory syncytial virus RNA panel - Respiratory system specimen by NAA with probe detection

1.38

0.35

1.8

1.7

—

(36660697) Celiac disease serology panel - Serum

0.68

0.34

1.0

1.1

—

(3011371) Neisseria gonorrhoeae DNA [Presence] in Specimen by NAA with probe detection

1.35

0.34

1.2

1.5

—

(3000494) Fungus identified in Specimen by Culture

110

1.31

0.34

1.3

—

(3003396) Base excess in Arterial blood by calculation

0.69

0.32

10.9

4.8

1.6

mmol/l

—

(3004588) Protein electrophoresis panel - Serum or Plasma

1.40

0.32

6.0

1.8

—

(3045783) Sodium and Potassium panel [Moles/volume] - Serum or Plasma

111

1.30

0.32

5.4

5.8

—

(3018010) Neutrophils/100 leukocytes in Blood

437

1.18

0.32

4.4

5.5

53.3

57.6

1.25

404

(3008486) Thyroxine (T4) free [Moles/volume] in Serum or Plasma

760

1.20

0.31

4.7

4.4

14.7

pmol/l

0.04

686

(3037522) Nuclear Ab [Titer] in Serum

140

0.76

0.30

1.4

1.3

—

565.7

titre

—

(3044938) Influenza virus A RNA [Presence] in Specimen by NAA with probe detection

140

1.25

0.30

2.0

1.8

—

(3030467) Casts [#/volume] in Urine by Automated count

245

1.19

0.28

3.1

3.3

0.6

0.4

e6/l

0.26

170

(3041942) Cyclic citrullinated peptide Ab [Units/volume] in Serum

188

1.21

0.28

1.2

1.3

9.1

u/ml

—

(3013826) Glucose [Moles/volume] in Serum or Plasma

540

0.86

0.28

4.7

4.0

6.5

mmol/l

0.00

494

(3006504) Eosinophils/100 leukocytes in Blood

431

1.16

0.28

4.4

5.6

3.3

2.6

0.99

393

(3026493) Urate [Moles/volume] in Serum or Plasma

217

1.20

0.27

2.7

328.1

6515.2

umol/l

1.30

185

(3029879) Epithelial cells.squamous [#/volume] in Urine by Automated count

138

0.77

0.27

2.2

3.0

7.4

5.0

e6/l

—

(3001604) Monocytes [#/volume] in Blood

461

1.16

0.27

5.2

5.5

0.6

0.5

e9/l

0.42

397

(3006315) Basophils [#/volume] in Blood

462

1.15

0.26

5.2

5.6

0.0

e9/l

0.23

400

(3019309) Folate [Moles/volume] in Red Blood Cells

180

1.21

0.26

2.6

1.7

1191.0

1193.8

nmol/l

0.00

135

(4010399)

1.20

0.25

1.3

1.4

—

(3002030) Lymphocytes/100 leukocytes in Blood

444

1.15

0.24

4.5

5.7

31.3

28.2

0.76

406

(43054903) Holo-transcobalamin II [Moles/volume] in Serum

395

1.15

0.24

2.2

1.9

99.8

99.3

pmol/l

0.03

175

(40761535) Cells panel - Urine sediment

1.29

0.23

2.1

3.1

—

(3050380) Cytology report of Cervical or vaginal smear or scraping Cyto stain

1.30

0.23

1.6

1.4

—

(3016431) Calcium.ionized [Moles/volume] adjusted to pH 7.4 in Serum or Plasma

474

0.88

0.22

7.1

5.3

1.2

mmol/l

0.15

391

(3027273) Bicarbonate [Moles/volume] in Venous blood

1.23

0.22

1.6

2.3

26.5

24.7

mmol/l

—

(3044254) Respiratory syncytial virus RNA [Presence] in Specimen by NAA with probe detection

1.23

0.22

2.2

1.9

—

(3032080) INR in Blood by Coagulation assay

348

1.14

0.22

7.9

6.7

1.0

1.2

inr

2.59

104

(46235759) Influenza virus B RNA [Presence] in Nasopharynx by NAA with probe detection

1.20

0.22

2.4

1.9

—

(3008898) HLA-B27 [Presence]

1.20

0.22

1.0

1.1

—

(3032773) Endomysium IgG Ab [Titer] in Serum

0.00

0.21

0.0

1.0

—

(3031478) Chlamydophila pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.5

—

(3020629) Protein S Free Ag actual/normal in Platelet poor plasma by Immunoassay

0.00

0.21

0.0

1.0

—

100.5

—

(3010380) Borrelia burgdorferi IgG Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.3

—

(3014973) Borrelia burgdorferi IgM Ab [Units/volume] in Cerebral spinal fluid

0.00

0.21

0.0

1.3

—

(3023410) Appearance of Cerebral spinal fluid

0.00

0.21

0.0

1.2

—

(43055120) Cytomegalovirus DNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection

0.00

0.21

0.0

3.6

—

(37020937) Giardia lamblia DNA [Presence] in Stool by NAA with probe detection

0.00

0.21

0.0

1.3

—

(3020565) Legionella pneumophila DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.5

—

(3023420) DNA double strand Ab [Units/volume] in Serum

0.00

0.21

0.0

1.7

—

(36305771) Cryptosporidium sp DNA [Presence] in Stool by NAA with probe detection

0.00

0.21

0.0

1.3

—

(3020717) Zinc [Moles/volume] in Serum or Plasma

0.00

0.21

0.0

1.0

—

20.0

—

(4268621)

0.00

0.21

0.0

1.7

—

(3005570) Glucose [Moles/volume] in Urine

0.00

0.21

0.0

3.3

—

(3043405) Microscopic observation [Identifier] in Specimen by Non-gynecological cytology method

0.00

0.21

0.0

1.0

—

(3002523) Influenza virus A Ag [Presence] in Specimen

0.00

0.21

0.0

1.1

—

(3012477) Bordetella pertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

0.21

0.0

1.4

—

(3003740) Influenza virus B Ag [Presence] in Specimen

0.00

0.21

0.0

1.1

—

(3023419) Bacteria identified in Sputum by Culture

0.00

0.21

0.0

2.5

—

(3013115) Eosinophils [#/volume] in Blood

478

1.13

0.20

5.4

5.6

0.2

e9/l

0.62

420

(4306422)

0.00

0.20

0.0

1.0

—

(40765161) Human bocavirus DNA [Presence] in Specimen by NAA with probe detection

0.00

0.20

0.0

1.4

—

(3023024) Carbon dioxide [Partial pressure] in Capillary blood

1.16

0.19

1.8

3.2

4.8

5.2

kpa

—

(40768804) Tissue Pathology biopsy report

430

1.12

0.19

2.4

2.0

—

(3051552) Clostridioides difficile toxin genes [Presence] in Stool by NAA with probe detection

1.24

0.19

1.1

1.5

—

(3018095) Leukocytes [#/volume] in Urine

338

0.88

0.18

3.3

4.1

53.2

66.2

e6/l

0.10

216

(3006093) Chlamydia trachomatis DNA [Presence] in Specimen by NAA with probe detection

1.20

0.18

1.3

1.6

—

(21494755) Public health laboratory ask at order entry panel

0.75

0.17

1.6

1.3

—

(3026361) Erythrocytes [#/volume] in Blood

103

1015

1.32

0.17

19.8

19.9

4.3

4.4

e12/l

0.41

985

(3019069) Monocytes/100 leukocytes in Blood

432

1.11

0.17

4.7

5.9

8.1

8.2

0.06

398

(3018418) pH of Serum or Plasma

306

0.89

0.17

5.2

3.4

7.4

—

(3019198) Lymphocytes [#/volume] in Blood

472

1.11

0.17

5.3

5.6

1.9

1.8

e9/l

0.18

420

(3015399) Transferrin receptor.soluble [Mass/volume] in Serum or Plasma

226

1.14

0.17

1.8

2.1

3.0

3.1

mg/l

0.05

193

(3021584) Pregnancy associated plasma protein A [Units/volume] in Serum or Plasma

1.19

0.17

2.1

1.5

—

(3042936) Bacteria identified in Isolate by Culture

129

0.84

0.15

1.8

2.0

—

(40760892) CBC W Ordered Manual Differential panel - Blood

218

1.13

0.15

7.7

4.9

—

(3004410) Hemoglobin A1c/Hemoglobin.total in Blood

848

1.13

0.15

5.8

5.6

38.5

39.4

mmol/mol

0.60

776

(3002256) Pathology report gross observation

122

1.17

0.14

1.4

1.3

—

(36304419) Bacteria [Presence] in Urine

248

1.12

0.14

3.2

—

(3044889) 12 lead EKG panel

644

0.91

0.14

3.5

3.7

—

(3029187) Natriuretic peptide.B prohormone N-Terminal [Mass/volume] in Serum or Plasma

269

1.11

0.13

2.1

2.7

1052.5

1179.0

ng/l

0.08

229

(3019800) Troponin T.cardiac [Mass/volume] in Serum or Plasma

340

0.92

0.11

5.1

3.7

15.2

35.6

ng/l

1.07

235

(3022096) Basophils/100 leukocytes in Blood

421

1.08

0.10

4.6

5.7

0.7

0.40

383

(3014007) Fractional oxyhemoglobin in Arterial blood

1.07

0.09

1.8

5.3

91.6

95.2

—

(3015736) pH of Urine

378

0.93

0.09

3.3

3.8

—

(3019900) Cholesterol [Moles/volume] in Serum or Plasma

905

1.11

0.09

4.5

4.7

4.8

mmol/l

0.13

831

(3009201) Thyrotropin [Units/volume] in Serum or Plasma

885

1.10

0.09

5.8

5.3

1.7

1.9

mu/l

1.13

806

(3023368) Bacteria identified in Blood by Culture

215

1.09

0.08

3.6

3.8

—

(3044640) Blood type and Crossmatch panel - Blood

296

0.93

0.08

1.7

2.0

—

(3023602) Cholesterol in HDL [Moles/volume] in Serum or Plasma

896

1.10

0.08

4.6

4.5

1.6

mmol/l

0.01

814

(3000991) Gas panel - Venous blood

1.05

0.08

1.6

4.9

—

(40758558) Short blood count panel - Blood

255

1.08

0.08

5.7

6.8

—

(3009508) Creatinine [Moles/volume] in Urine

265

0.93

0.08

3.0

2.7

5.6

7.0

mmol/l

1.78

211

(3024950) Chlamydia trachomatis DNA [Presence] in Urine by NAA with probe detection

108

1.13

0.07

1.8

2.3

—

(3038288) Influenza virus B RNA [Presence] in Specimen by NAA with probe detection

1.05

0.07

1.4

1.8

—

(3043924) Respiratory syncytial virus RNA [Identifier] in Specimen by NAA with probe detection

1.04

0.07

1.4

1.8

—

(3013650) Neutrophils [#/volume] in Blood by Automated count

545

1.06

0.06

7.9

9.1

3.7

4.1

e9/l

0.75

476

(3030306) Epithelial cells.non-squamous [#/volume] in Urine by Automated count

148

1.10

0.06

2.0

2.8

1.0

1.1

e6/l

0.06

(3048773) Triglyceride [Moles/volume] in Serum or Plasma --fasting

857

1.08

0.06

4.0

1.2

mmol/l

0.19

769

(3003694) ABO and Rh group [Type] in Blood

263

0.94

0.06

1.8

1.5

—

(3021347) Calcium.ionized [Moles/volume] in Serum or Plasma

436

1.06

0.06

6.7

4.4

1.2

mmol/l

0.06

392

(3033319) Streptococcus pyogenes Ag [Presence] in Throat

1.12

0.05

1.7

1.5

—

(46236098) ABO and Rh group [Type] in Blood by Confirmatory method

219

1.06

0.05

1.4

2.0

—

(3020682) Albumin/Creatinine [Ratio] in Urine

269

0.96

0.03

4.2

3.6

7.8

7.1

mg/mmol

0.04

150

(1761868) Lipid panel - Serum or Plasma

311

1.04

0.03

3.5

2.9

—

(40761511) CBC panel - Blood by Automated count

973

1.08

0.02

12.9

12.1

—

(46235355) HIV 1 and 2 tests - Meaningful Use set

173

1.05

0.01

1.7

—

(3051714) Fibrin D-dimer FEU [Mass/volume] in Platelet poor plasma

223

1.04

0.01

1.6

0.8

1.1

mg/l

0.77

181

(3025839) Triglyceride [Moles/volume] in Serum or Plasma

277

0.97

0.01

1.6

1.5

1.3

mmol/l

0.42

225

(3019150) Specific gravity of Urine by Refractometry

212

0.99

0.00

3.6

4.2

1.0

kg/l

—

(3012516) Albumin [Mass/volume] in Urine

252

0.99

0.00

2.9

2.8

81.6

29.7

mg/l

0.37

150

(3029287) Urinalysis microscopic panel [#/volume] - Urine by Automated count

319

1.00

0.00

3.3

3.1

—

(3018251) Fasting glucose [Moles/volume] in Serum or Plasma

895

0.97

0.00

5.1

4.6

5.9

5.8

mmol/l

0.11

819

(3003510) Neisseria gonorrhoeae DNA [Presence] in Urine by NAA with probe detection

1.06

0.00

1.8

2.1

—

(3019050) Tissue transglutaminase IgA Ab [Units/volume] in Serum

239

1.01

0.00

1.1

1.2

0.4

1.7

u/ml

—

(3009542) Hematocrit [Volume Fraction] of Blood

836

1.02

0.00

12.7

13.6

36.3

39.3

1.12

599

(3001308) Cholesterol in LDL [Moles/volume] in Serum or Plasma

921

0.99

0.00

5.0

5.1

2.7

2.8

mmol/l

0.22

837

(3020460) C reactive protein [Mass/volume] in Serum or Plasma

931

0.99

0.00

12.2

13.4

22.1

20.8

mg/l

0.11

715

(3025941) Bacteria identified in Stool by Culture

0.89

0.00

1.2

—

(1001509) Gas and Carbon monoxide and Electrolytes panel - Arterial blood

0.00

0.0

1.1

—

(40768806) Pleura Pathology biopsy report

0.00

0.0

1.1

—

(21494670) JAK2 gene exon 14 targeted mutation analysis in Blood or Tissue by Molecular genetics method

0.00

0.0

1.0

—

(3003434) Protein [Mass/volume] in Pleural fluid

0.00

0.0

1.1

—

30.3

—

(3030429) Borrelia sp DNA [Identifier] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(40762485) Glomerular basement membrane Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.3

—

(3053028) Streptococcus sp identified in Specimen by Organism specific culture

0.00

0.0

1.1

—

(3012441) Differential panel - Pleural fluid

0.00

0.0

1.0

—

(3035999) Lactate [Moles/volume] in Cerebral spinal fluid

0.00

0.0

1.6

—

2.0

—

(3005082) Progesterone [Moles/volume] in Serum or Plasma

0.00

0.0

1.3

—

34.9

—

(3035933) Granulocytes/100 leukocytes in Blood

0.00

0.0

1.0

—

(3016881) Enterovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.9

—

(40766048) U1 small nuclear ribonucleoprotein 70kD Ab [Units/volume] in Serum by Immunoassay

0.00

0.0

1.1

—

(40764126) Parainfluenza virus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3025634) Parainfluenza virus 1 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3038297) Parainfluenza virus 4 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3023199) Leukocytes [#/volume] in Pleural fluid

0.00

0.0

1.0

—

1194.8

—

(40758897) Direct antiglobulin test.IgG specific reagent [Presence] on Red Blood Cells

0.00

0.0

3.0

—

(3022803) Oxygen [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

1.6

—

(3045066) Thymidine kinase [Enzymatic activity/volume] in Serum

0.00

0.0

1.2

—

43.6

—

(3021236) Streptolysin O Ab [Units/volume] in Serum or Plasma

0.00

0.0

1.6

—

91.8

—

(3028653) Carboxyhemoglobin/Hemoglobin.total in Arterial blood

1.02

0.00

1.8

5.1

1.7

1.3

—

(44813793)

0.00

0.0

1.0

—

(3037692) Legionella sp identified in Specimen by Organism specific culture

0.00

0.0

1.3

—

(3027953) Aldolase [Enzymatic activity/volume] in Serum or Plasma

0.00

0.0

1.6

—

4.9

—

(3018993) Complement total hemolytic CH100 [Units/volume] in Serum or Plasma

0.00

0.0

1.0

—

(44806118)

0.00

0.0

1.6

—

(3024263) Appearance of Synovial fluid

0.00

0.0

1.0

—

(3030692) Respiratory virus DNA+RNA [Identifier] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3000492) Spirometry study

1.00

0.00

1.6

1.7

—

(3002148) Methylenedioxymethamphetamine [Presence] in Urine by Screen method

0.00

0.0

1.0

—

(3042596) Human coronavirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(44790048)

0.00

0.0

1.6

—

(44806420)

0.00

0.0

1.6

—

(42868544) Hantavirus puumala IgM Ab [Presence] in Serum or Plasma by Immunofluorescence

0.00

0.0

1.2

—

(3013727) Leukocytes other/100 leukocytes in Blood

0.00

0.0

4.0

—

52.4

—

(3040359) Human coronavirus NL63 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3022250) Lactate dehydrogenase [Enzymatic activity/volume] in Serum or Plasma by Lactate to pyruvate reaction

0.94

0.00

7.9

3.7

229.9

247.5

u/l

—

(3051651) Icteric interference index of Serum or Plasma

0.00

0.0

2.5

—

(21493690) Lymphocyte T-cell and B-cell and Natural killer subsets panel - Blood

0.00

0.0

1.6

—

(44790047)

0.00

0.0

1.6

—

(42869593) Oxyhemoglobin/Hemoglobin.total [Pure mass fraction] in Capillary blood

0.00

0.0

1.4

—

(40768441) Liver Pathology biopsy report

0.00

0.0

1.0

—

(3011166) Borrelia burgdorferi Ab [Presence] in Cerebral spinal fluid

0.00

0.0

1.2

—

(3006217) Methemoglobin/Hemoglobin.total in Arterial blood

1.02

0.00

1.8

5.1

1.0

0.7

—

(3042975) Streptococcus sp identified in Isolate by Organism specific culture

0.00

0.0

1.0

—

(3000108) Respiratory syncytial virus B RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(40764127) Haemophilus influenzae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3016914) Bacteria identified in Cerebral spinal fluid by Culture

0.00

0.0

1.6

—

(3011436) Histone Ab [Units/volume] in Serum

0.00

0.0

1.4

—

(44790049)

0.00

0.0

1.6

—

(3030558) Cytomegalovirus DNA [Units/volume] (viral load) in Specimen by NAA with probe detection

0.00

0.0

1.2

—

(21491868) Cryoglobulin [Mass/volume] in Serum

0.00

0.0

1.0

—

(3037875) Bordetella parapertussis DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3036782) Glucose [Moles/volume] in Pleural fluid

0.00

0.0

1.2

—

7.3

—

(3003171) Aldosterone [Moles/volume] in Serum or Plasma --upright

0.00

0.0

1.2

—

383.0

—

(4027681)

0.00

0.0

1.0

—

(3027456) Digoxin [Moles/volume] in Serum or Plasma

0.00

0.0

4.0

—

0.8

—

(3021197) Magnesium Ionized [Moles/volume] in Serum or Plasma

0.00

0.0

2.0

—

(44817194) Complement alternate pathway AH50 actual/normal in Serum by Immunoassay

0.00

0.0

1.0

—

96.0

—

(3003265) Liver kidney microsomal Ab [Titer] in Serum by Immunofluorescence

0.00

0.0

1.0

—

(3016018) Differential panel - Cerebral spinal fluid

0.00

0.0

1.5

—

(3038546) Human coronavirus OC43 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3016244) Insulin [Units/volume] in Serum or Plasma

0.00

0.0

1.0

—

7.7

—

(3049506) Microalbumin [Mass/time] in Urine collected for unspecified duration

0.00

0.0

1.6

—

(3011363) Streptococcus pneumoniae Ag [Presence] in Urine

0.00

0.0

1.2

—

(3006262) Parainfluenza virus 3 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(4024509)

0.00

0.0

1.0

—

(3000208) Alpha tocopherol [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

29.5

—

(3004716) Salmonella sp identified in Stool by Organism specific culture

0.86

0.00

2.4

1.3

—

(3046896) Herpes virus 6 DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

0.0

1.0

—

(3046294) Neutrophil cytoplasmic Ab.classic [Titer] in Serum

0.00

0.0

1.0

—

(3016894) Varicella zoster virus DNA [Presence] in Cerebral spinal fluid by NAA with probe detection

0.00

0.0

1.3

—

(3009595) Pneumocystis jiroveci DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.3

—

(3005156) Respiratory syncytial virus A RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.0

—

(3019497) Choriogonadotropin.beta subunit free [Moles/volume] in Serum or Plasma

0.00

0.0

1.2

—

(3051593) INR in Capillary blood by Coagulation assay

0.00

0.0

12.3

—

(3002109) Cholesterol in LDL/Cholesterol in HDL [Mass Ratio] in Serum or Plasma

0.98

0.00

2.3

1.6

—

(46235128) Lupus anticoagulant aPTT and dRVVT screening panel W Reflex

0.00

0.0

1.0

—

(40758895) Direct antiglobulin test.complement C3d specific reagent [Presence] on Red Blood Cells

0.00

0.0

3.0

—

(3043849) Epstein Barr virus DNA [Units/volume] (viral load) in Serum or Plasma by NAA with probe detection

0.00

0.0

3.7

—

(21494434) Karyotype in Bone marrow

0.00

0.0

1.0

—

(21493195) Respiratory pathogens DNA and RNA tested for in Respiratory system specimen by NAA with probe detection

0.00

0.0

1.0

—

(3005757) Coagulation factor V activity actual/normal in Platelet poor plasma by Coagulation assay

0.00

0.0

1.0

—

107.2

—

(40757494) Bilirubin.total [Moles/volume] in Blood

0.00

0.0

1.8

—

(3041642) Human coronavirus 229E RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3032699) Streptococcus pneumoniae DNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.6

—

(3006257) Acetylcholine receptor Ab [Moles/volume] in Serum

0.00

0.0

1.0

—

(21492711) Cytomegalovirus IgG Ab avidity [Presence] in Serum or Plasma by Immunoassay

0.00

0.0

1.2

—

(3011648) Oxygen content in Venous blood

0.00

0.0

2.6

—

10.7

—

(3012158) Parainfluenza virus 2 RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

1.1

—

(3025023) Rhinovirus RNA [Presence] in Specimen by NAA with probe detection

0.00

0.0

2.0

—

(3036432) Mycobacterium tuberculosis genotype [Identifier] in Isolate

0.00

0.0

10.0

—

(3045156) Carbon dioxide [Partial pressure] adjusted to patient's actual temperature in Arterial blood

0.00

0.0

1.6

—

(3028433) Virus identified in Specimen by Culture

0.00

0.0

1.5

—

Mortality – FinRegistry

↥

Association

Association between endpoint CD2_BENIGN_FEMALE_GEN_NOS and mortality.

Females

No data

Males

No data

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_FEMALE_GEN_NOS.

N-year risk	Females	Males
1	No data	No data
5	No data	No data
10	No data	No data
15	No data	No data
20	No data	No data

Relationships between endpoints

↥

Index endpoint: CD2_BENIGN_FEMALE_GEN_NOS – Benign neoplasm: Female genital organ, unspecified

GWS hits: -

Endpoint

Case Overlap

Survival Analysis

Genetic Correlations

Genetic Signals

N (Jaccard index)

HR [CI]

rg [CI]

Hits

Coloc Hits

FinRegistry

FinnGen

FinRegistry

FinnGen

Loading data

Benign neoplasm: Female genital organ, unspecified

Endpoint definition

Endpoint definition steps

FinnGen

Phenotype data

1. Apply sex-specific rule

2. Check conditions

3. Check pre-conditions, main-only, mode, registry filters

4. Check minimum number of events

5. Include endpoints

6. Filter based on genotype QC (FinnGen only)

Similar endpoints

Case counts by codes

Summary Statistics

-FinRegistry-

Key figures

-FinnGen-

Key figures

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS (R11)

Matched cohort

LabWAS

Mortality – FinRegistry

Association

Females

Males

Mortality risk

Relationships between endpoints