Congenital malformations of oesophagus

Q17_CONGEN_MALFO_OESOPHAGUS

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519972

1. Apply sex-specific rule

None

519972

2. Check conditions

None

519972

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 Q39
  • Cause of death: ICD-10 Q39

2 out of 7 registries used, show all original rules.

177

4. Check minimum number of events

None

177

5. Include endpoints

None

177

6. Filter based on genotype QC (FinnGen only)

172

Control definitions (FinnGen only)

Control exclude
Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF4
Parent code in ICD-10
Q3[8-9]|Q4[0-5]
Name in latin
Malformationes congenitae oesophagi

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 1406 640 758
Only index persons 1057 489 568
Unadjusted period prevalence (%)
Whole population 0.02 0.02 0.02
Only index persons 0.02 0.02 0.02
Median age at first event (years)
Whole population 21.73 34.07 10.71
Only index persons 35.77 49.40 24.03

-FinnGen-

Key figures

All Female Male
Number of individuals 172 75 97
Unadjusted period prevalence (%) 0.04 0.03 0.04
Median age at first event (years) 60.14 57.87 61.89

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

No data

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
177
Matched controls
1770
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q39.6
ICD-10 Finland
Diverticulum of oesophagus
+∞
101.0
87
*
UJD10
NOMESCO Finland
Esophagoscopy, gastroscopy and duodenoscopy
12.8
63.3
127
294
R13
ICD-10 Finland
Dysphagia
10.0
36.8
49
65
Q39.11
ICD-10 Finland
Atresia of oesophagus with broncho-oesophageal fistula
+∞
36.8
34
*
K22.5
ICD-10 Finland
Diverticulum of oesophagus, acquired
139.3
33.0
34
*
JCA55
NOMESCO Finland
Endoscopic dilatation of oesophagus
93.0
28.8
31
*
UGC02
NOMESCO Finland
Rigid bronchoscopy
114.9
27.6
29
*
JC2AB
NOMESCO Finland
Oesophagus X-ray examination with contrast
68.8
25.9
29
5
Q39.0
ICD-10 Finland
Atresia of oesophagus without fistula
+∞
23.5
22
*
Q39.10
ICD-10 Finland
Atresia of oesophagus with broncho-oesophageal fistula
+∞
21.3
20
*
UJD02
NOMESCO Finland
Gastroscopy
9.5
19.8
25
30
K21.9
ICD-10 Finland
Gastro-oesophageal reflux disease without oesophagitis
5.7
17.5
37
78
75020
ICD-8 Finland
Other congenital anomalies of upper alimentary tract, Atresia oesophagi
+∞
16.9
16
*
UGC12
NOMESCO Finland
Flexible bronchoscopy
5.7
15.4
32
66
Q39.19
ICD-10 Finland
Atresia of oesophagus with tracheo/broncho-oesophageal fistula
+∞
14.8
14
*
ZXD10
NOMESCO Finland
Scheduled procedure
3.3
14.0
93
443
JDW98
NOMESCO Finland
Other transluminal endoscopic operation on stomach or duodenum
37.3
13.8
17
5
Q39.9
ICD-10 Finland
Congenital malformation of oesophagus, unspecified
+∞
13.7
13
*
UJC12
NOMESCO Finland
Flexible oesophagoscopy
43.7
13.4
16
*
K21.0
ICD-10 Finland
Gastro-oesophageal reflux disease with oesophagitis
4.8
13.2
33
80
WX408
NOMESCO Finland
General anesthesy, balanced
3.3
12.9
70
292
Q39.3
ICD-10 Finland
Congenital stenosis and stricture of oesophagus
+∞
12.6
12
*
JCA60
NOMESCO Finland
Transcervical excision of diverticulum of oesophagus
139.5
12.6
13
*
K44.9
ICD-10 Finland
Diaphragmatic hernia without obstruction or gangrene
5.4
11.8
25
52
A02BC05
ATC
esomeprazole; systemic
3.0
11.8
84
407
A03FA02
ATC
cisapride; oral, rectal
5.0
11.7
27
61
7503C
ICD-9 Finland
Other congenital anomalies of upper alimentary tract, Tracheooesophageal fistula, oesophageal atresia and stenosis[RUOKATORVIATRESIA ALAFISTELEINEEN]
+∞
11.6
11
*
Q39.88
ICD-10 Finland
Other congenital malformations of oesophagus
+∞
11.6
11
*
JC2KB
NOMESCO Finland
Functional X-ray examination of swallowing
27.1
11.3
15
6
1300
FHL
Esophagogastroduodenoscopy (also includes staining)
46.5
11.1
13
*
WX402
NOMESCO Finland
General anaesthesia
3.2
10.8
57
231
GD1AA
NOMESCO Finland
Thorax X-ray examination
2.8
10.6
98
537
JD1EE
NOMESCO Finland
Ultrasound examination of gastro-oesophageal reflux
116.6
10.5
11
*
JCE31
NOMESCO Finland
Treatment esophageal atresia
+∞
10.5
10
*
J18.9
ICD-10 Finland
Pneumonia, unspecified
2.9
10.1
69
322
GD1UA
NOMESCO Finland
Thorax X-ray examination outside radiological department
3.2
9.7
48
186
T18.1
ICD-10 Finland
Foreign body in oesophagus
32.0
9.5
12
*
504
Kela drug reimbursment
Conditions requiring daily forced enteral nutrition
10.4
9.5
18
19
ZXE00
NOMESCO Finland
One hour or less
2.6
9.2
88
482
A02BC01
ATC
omeprazole; systemic
2.8
9.1
62
286
WX404
NOMESCO Finland
Intravenous generell anesthesy
2.9
9.0
54
232
K22.2
ICD-10 Finland
Oesophageal obstruction
25.6
9.0
12
5
XG413
NOMESCO Finland
Spirometry with oscillometry
13.7
8.5
14
11
Z2221
NOMESCO Finland
Medical doctor
2.7
8.5
64
309
1323
FHL
Esophagoscopy and dilatation
94.4
8.5
9
*
GD1RA
NOMESCO Finland
Dynamic X-ray examination of respiratory organs with convetional X-ray picture
+∞
8.4
8
*
7503A
ICD-9 Finland
Other congenital anomalies of upper alimentary tract, Tracheooesophageal fistula, oesophageal atresia and stenosis[RUOKATORVIATRESIA ILMAN FISTELIÄ]
+∞
8.4
8
*
XG412
NOMESCO Finland
Flow-volume spirometry with bronchospasmolysis
4.3
8.3
23
60
J38.0
ICD-10 Finland
Paralysis of vocal cords and larynx
18.2
8.2
12
7
UJC02
NOMESCO Finland
Rigid oesophagoscopy
23.3
8.1
11
5
TJD20
NOMESCO Finland
Change of gastrostomy tube
19.4
7.7
11
6
ZXE10
NOMESCO Finland
More than one and less than three hours
2.5
7.7
75
407
R4110
NOMESCO Finland
Physiotherapy
2.6
7.7
62
308
R03DC03
ATC
montelukast; oral
3.0
7.6
40
159
203
Kela drug reimbursment
Chronic asthma and similar chronic obstructive pulmonary diseases
2.7
7.5
50
225
ZXD20
NOMESCO Finland
Day surgery
3.3
7.4
30
102
J45.1
ICD-10 Finland
Nonallergic asthma
3.5
7.3
27
86
1310
FHL
Esophagogastroscopy
+∞
7.3
7
*
JBC00
NOMESCO Finland
Gastro-oesophageal antireflux operation
+∞
7.3
7
*
Q39.80
ICD-10 Finland
Duplication of oesophagus
+∞
7.3
7
*
1304
FHL
Esophagogastroduodenoscopy and other therapeutic procedure
+∞
7.3
7
*
Z3226
NOMESCO Finland
Physiotherapist
2.6
7.1
49
224
ZXD05
NOMESCO Finland
Urgent procedure
2.4
7.0
69
373
XJC02
NOMESCO Finland
Mesurement of oesophageal pressure and pressure profile of lower oesophageal sphincter
41.7
6.8
8
*
JDB00
NOMESCO Finland
Gastrostomy
72.3
6.5
7
*
Q87.26
ICD-10 Finland
VATER association
+∞
6.3
6
*
K22.8
ICD-10 Finland
Other specified diseases of oesophagus
+∞
6.3
6
*
JCA08
NOMESCO Finland
Endoscopic removal of foreign body from oesophagus
27.8
6.3
8
*
GD1BD
NOMESCO Finland
Thorax extensive CT-examination
3.9
6.2
19
53
JF1AB
NOMESCO Finland
Passage examination of small bowell with X-ray
13.1
6.2
10
8

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
83
159
8.95
46.64
1.9
1.3
—
—
—
0
0
80
445
2.46
7.78
4.1
2.6
—
—
—
0
0
98
618
2.31
6.93
18.9
12.8
1.28
1.29
inr
0.01
20
161
82
482
2.31
6.83
2.3
2.1
—
—
—
0
0
22
76
3.16
5.25
12.8
14.6
—
—
—
0
0
74
467
2.00
4.73
2.3
1.9
92.35
95.40
pmol/l
0.24
39
242
15
46
3.47
4.29
4.1
3.1
—
—
—
0
0
96
690
1.86
3.95
7.9
8.9
1.22
1.21
mmol/l
0.43
85
599
100
730
1.85
3.90
5.1
7.8
0.19
0.21
e9/l
0.78
86
636
42
232
2.06
3.77
4.6
3.2
893.94
275.95
ng/l
0.45
35
182
24
105
2.49
3.72
1.4
1.4
—
—
—
0
0
82
570
1.82
3.69
5.5
6.1
36.28
35.30
g/l
0.92
76
543
108
824
1.80
3.49
6.6
10.2
4.60
4.17
e9/l
0.60
92
716
47
279
1.93
3.43
1.5
1.5
20.66
20.81
nmol/l
0.02
40
241
53
330
1.87
3.34
2.5
2.4
2.98
3.09
mg/l
0.12
47
292
67
454
1.77
3.18
3.1
3.5
32.40
204.71
e6/l
0.63
56
348
59
393
1.75
2.94
4.3
4.5
—
—
—
0
0
49
310
1.80
2.90
2.6
3.0
5.91
4.13
e6/l
0.57
43
279
73
522
1.68
2.79
3.9
4.0
74.37
66.04
e6/l
0.10
58
371
57
389
1.69
2.56
2.6
3.9
7.36
7.40
ph
—
5
73
7
16
4.51
2.50
1.4
24.6
10.44
11.12
%
—
7
16
8
21
3.94
2.49
1.5
4.5
—
—
—
0
0
90
693
1.61
2.49
6.9
6.8
13.68
13.18
umol/l
0.09
85
662
95
743
1.60
2.45
5.1
7.0
1.92
2.03
e9/l
0.40
82
652
45
292
1.73
2.41
3.3
3.3
515.89
556.34
mosm/kgh2o
0.56
37
248
85
650
1.59
2.39
8.6
8.3
1.22
1.21
mmol/l
0.54
79
602
102
819
1.58
2.30
7.6
6.1
6.03
6.80
mmol/l
8.77
96
768
88
683
1.57
2.30
5.5
7.6
—
—
—
0
0
35
215
1.78
2.26
3.0
2.7
13.11
13.12
umol/l
0.00
35
201
58
410
1.62
2.24
2.9
3.2
0.33
0.37
e6/l
0.11
46
303
8
24
3.44
2.21
1.8
17.5
61.88
69.30
%
—
8
24
9
30
3.10
2.18
2.2
16.1
—
—
—
0
0
26
147
1.90
2.17
1.2
1.2
—
—
—
0
0
91
720
1.54
2.14
5.2
7.0
0.65
0.60
e9/l
1.13
78
617
0
55
0.00
2.11
0.0
1.1
—
—
—
0
0
91
722
1.54
2.10
5.2
7.0
0.04
0.04
e9/l
0.83
78
616
56
402
1.57
2.00
3.9
7.4
—
—
—
0
0
12
51
2.45
2.00
2.3
2.6
—
—
—
0
0
37
240
1.68
1.97
1.8
2.9
29.43
29.87
s
0.23
37
235
52
370
1.57
1.92
1.7
1.5
—
—
—
0
0
151
1359
1.76
1.91
22.4
15.2
27.66
25.01
mg/l
0.49
128
1052
7
22
3.27
1.90
3.0
2.3
—
—
—
0
0
53
383
1.55
1.82
2.3
2.1
197.38
233.18
u/l
0.18
53
369
46
322
1.58
1.82
2.5
3.4
343.13
5654.80
umol/l
1.24
40
281
26
157
1.77
1.78
1.8
1.5
—
—
—
0
0
6
19
3.23
1.67
2.5
2.4
—
—
—
0
0
82
666
1.43
1.54
8.2
10.7
0.00
0.00
e9/l
0.28
65
526
25
374
0.61
1.45
2.7
4.1
0.00
0.00
estimate
—
7
123
53
401
1.46
1.44
3.0
3.1
—
—
—
0
0
34
234
1.56
1.44
2.7
2.9
1.49
2.59
e6/l
0.51
21
128
13
68
1.98
1.37
1.0
1.2
—
—
—
0
0
26
176
1.56
1.19
12.3
8.1
—
—
—
0
0
151
1403
1.52
1.16
18.3
13.4
—
—
—
0
0
7
33
2.17
1.07
1.3
1.2
—
—
—
0
0
104
915
1.33
1.06
3.9
4.3
—
—
—
0
0
151
1410
1.48
1.05
11.0
10.3
25.01
26.72
u/l
0.52
146
1365
5
22
2.31
1.04
2.8
3.6
40.16
41.08
%
—
5
22
36
270
1.42
1.02
2.0
2.5
1.39
1.44
mg/l
0.04
26
227
6
117
0.50
0.98
1.3
3.4
—
—
—
0
0
24
169
1.49
0.93
8.7
6.7
—
7.41
—
0
12
159
1511
1.51
0.88
30.9
22.1
39.30
40.06
%
0.82
153
1438
43
343
1.34
0.84
5.1
4.0
—
—
—
0
0
15
222
0.65
0.84
1.4
1.6
—
—
—
0
0
8
47
1.73
0.82
1.1
1.2
—
—
—
0
0
8
47
1.73
0.82
5.0
2.6
—
—
—
0
0
0
27
0.00
0.78
0.0
1.3
—
—
—
0
0
0
28
0.00
0.77
0.0
4.4
—
—
—
0
0
40
322
1.31
0.74
1.7
1.9
1.16
1.33
mmol/l
1.46
34
278
31
240
1.35
0.74
1.5
1.7
890.27
1252.94
nmol/l
1.89
22
191
5
25
2.03
0.73
1.0
1.0
—
—
—
0
0
7
116
0.59
0.70
3.0
3.7
—
—
—
0
0
45
371
1.29
0.70
2.9
3.2
—
—
—
0
0
96
868
1.23
0.67
4.7
3.8
—
—
—
0
0
5
28
1.81
0.66
3.0
3.4
1.62
1.31
e9/l
—
5
23
19
138
1.42
0.66
9.3
6.8
—
—
—
0
0
15
104
1.48
0.65
2.6
4.8
—
—
—
0
0
12
79
1.56
0.64
1.5
7.3
1.28
1.28
%
0.00
12
79
5
29
1.74
0.64
1.0
4.9
—
—
—
0
0
5
29
1.74
0.64
2.6
4.3
0.60
1.56
%
—
5
24
8
49
1.66
0.63
2.6
3.3
1661.63
48.17
u/ml
—
8
41
0
21
0.00
0.60
0.0
1.1
—
—
—
0
0
25
194
1.34
0.60
2.3
2.2
—
—
—
0
0
16
115
1.43
0.59
1.2
1.3
—
—
—
0
0
0
23
0.00
0.58
0.0
3.7
—
4.88
—
0
23
0
23
0.00
0.58
0.0
4.3
—
62.09
—
0
23
6
35
1.74
0.58
1.3
6.3
—
—
—
0
0
8
55
1.48
0.57
3.5
5.1
—
—
—
0
0
17
126
1.39
0.54
3.9
4.3
71.36
70.60
e9/l
0.04
11
95
11
75
1.50
0.52
1.5
7.6
0.61
0.67
%
0.17
11
75
124
1167
1.21
0.51
3.7
3.9
1.14
1.27
mmol/l
2.12
115
1072
35
415
0.80
0.51
2.5
2.9
—
—
—
0
0
15
110
1.40
0.50
1.7
1.8
0.85
0.97
g/l
0.48
15
99
32
265
1.25
0.49
2.7
3.0
0.62
0.74
ug/l
0.61
23
179
7
46
1.54
0.49
1.0
1.0
—
—
—
0
0
130
1234
1.20
0.46
4.7
4.8
2.56
2.68
mmol/l
0.91
120
1142
25
304
0.79
0.45
4.1
4.1
1.02
1.02
kg/l
—
6
34
5
31
1.63
0.43
1.0
1.6
—
—
—
0
0
60
537
1.18
0.43
2.9
3.6
5.30
5.82
ph
—
5
38
23
186
1.27
0.43
1.1
1.3
180.57
7.95
u/ml
—
9
77
104
973
1.17
0.43
4.7
4.2
12.98
11.71
mm/h
0.43
96
907
10
70
1.45
0.42
1.3
1.3
—
—
—
0
0
10
70
1.45
0.42
3.7
14.6
0.94
1.26
mg/l
—
10
65
10
138
0.71
0.42
1.4
1.8
—
—
—
0
0
0
15
0.00
0.41
0.0
1.9
—
1.85
—
0
15
0
17
0.00
0.41
0.0
1.4
—
—
—
0
0
7
103
0.67
0.41
1.1
1.4
—
—
—
0
0
5
34
1.48
0.40
1.0
1.2
—
—
—
0
0
24
198
1.25
0.39
1.3
1.2
51.64
28.41
iu/ml
—
8
64
5
36
1.40
0.38
1.2
7.9
—
—
—
0
0
14
108
1.32
0.36
1.9
3.0
67.24
65.65
g/l
0.34
14
101
30
256
1.21
0.36
1.5
1.9
441.17
458.04
pmol/l
0.08
24
215
12
92
1.33
0.32
4.3
6.0
0.00
0.27
%
—
7
37
12
92
1.33
0.32
3.9
5.5
0.29
0.60
%
—
7
39
7
53
1.33
0.31
1.0
1.3
—
—
—
0
0
16
130
1.25
0.30
1.6
3.2
9.97
9.59
g/l
0.20
16
117
8
64
1.26
0.28
1.0
1.4
—
—
—
0
0
12
95
1.28
0.27
4.4
5.9
0.00
0.08
%
—
7
38
8
67
1.20
0.26
1.0
1.4
—
—
—
0
0
8
67
1.20
0.26
1.0
1.4
—
—
—
0
0
8
67
1.20
0.26
1.0
1.4
—
—
—
0
0
15
124
1.23
0.25
3.0
8.9
23.47
23.58
mmol/l
0.05
15
124
62
664
0.90
0.25
3.4
3.9
0.00
0.00
estimate
—
8
116
37
408
0.88
0.24
2.8
3.6
8.13
7.68
mmol/l
0.17
31
354
13
157
0.81
0.23
1.8
2.4
347.46
379.37
nmol/l
0.24
13
145
5
39
1.29
0.23
2.4
1.6
—
—
—
0
0
10
79
1.28
0.23
1.1
1.9
—
—
—
0
0
5
41
1.23
0.22
2.0
1.4
—
—
—
0
0
17
145
1.19
0.21
1.1
1.4
—
—
—
0
0
0
11
0.00
0.21
0.0
1.9
—
—
—
0
0
0
11
0.00
0.21
0.0
14.7
—
918.45
—
0
11
0
11
0.00
0.21
0.0
3.2
—
—
—
0
0
0
11
0.00
0.21
0.0
30.6
—
1578.55
—
0
11
0
10
0.00
0.21
0.0
1.0
—
—
—
0
0
0
10
0.00
0.21
0.0
1.3
—
—
—
0
0
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.8
—
—
—
0
0
0
12
0.00
0.21
0.0
2.8
—
70.63
—
0
12
0
12
0.00
0.21
0.0
1.0
—
218.08
—
0
12
0
12
0.00
0.21
0.0
1.0
—
228.17
—
0
6
0
12
0.00
0.21
0.0
1.7
—
3.50
—
0
7
0
12
0.00
0.21
0.0
1.0
—
—
—
0
0
54
503
1.11
0.21
4.3
4.0
28.26
50.26
ng/l
1.17
33
370
51
474
1.11
0.21
5.3
5.0
2.44
2.12
ug/l
0.23
46
420
30
270
1.13
0.20
1.3
1.9
—
—
—
0
0
62
658
0.91
0.20
5.1
5.2
0.00
0.00
estimate
—
7
126
0
14
0.00
0.20
0.0
12.0
—
103.33
—
0
9
124
1204
1.10
0.19
4.2
4.2
1.43
1.41
mmol/l
0.14
115
1109
13
111
1.18
0.16
1.3
1.6
—
—
—
0
0
12
105
1.15
0.11
4.6
5.5
0.29
0.83
%
—
7
48
12
105
1.15
0.11
1.2
1.5
—
—
—
0
0
15
167
0.89
0.11
1.2
1.5
—
—
—
0
0
32
341
0.92
0.11
1.4
1.6
2.26
2.30
g/l
0.04
20
189
124
1218
1.06
0.10
4.3
4.3
4.39
4.51
mmol/l
0.77
115
1129
5
45
1.11
0.10
1.2
1.4
—
—
—
0
0
5
45
1.11
0.10
1.2
1.2
—
—
—
0
0
5
48
1.04
0.09
1.2
1.2
—
—
—
0
0
64
661
0.95
0.09
3.3
3.8
0.00
0.01
estimate
—
9
134
12
107
1.13
0.08
4.9
4.6
68.58
66.56
ng/l
0.07
12
96
35
368
0.94
0.08
3.0
3.9
3.12
9.51
mg/mmol
2.67
26
247
7
68
1.03
0.08
1.0
1.4
—
—
—
0
0
6
74
0.80
0.07
1.8
2.5
—
—
—
0
0
12
108
1.12
0.07
1.6
1.8
—
—
—
0
0
7
82
0.85
0.07
1.1
1.3
—
14.20
—
0
5
9
88
1.02
0.07
1.6
2.6
5.50
4.86
e9/l
—
9
73
117
1153
1.04
0.06
5.3
5.8
38.14
40.19
mmol/mol
2.55
110
1081
33
345
0.95
0.06
4.1
3.7
—
—
—
0
0
20
189
1.07
0.05
2.6
7.5
5.52
5.75
kpa
0.84
20
184
120
1187
1.03
0.04
4.6
4.4
5.82
5.96
mmol/l
0.88
110
1094
101
998
1.03
0.03
3.6
3.7
14.77
14.79
pmol/l
0.02
93
914
18
171
1.06
0.03
2.9
4.0
7.94
11.28
umol/l
0.38
18
146
15
158
0.94
0.02
1.7
1.7
—
—
—
0
0
20
192
1.05
0.02
1.7
1.7
—
—
—
0
0
10
94
1.07
0.01
4.5
9.3
—
—
—
0
0
15
146
1.03
0.00
1.1
1.2
—
—
—
0
0
35
349
1.00
0.00
2.7
3.3
3166.09
235.84
mg/l
0.71
29
243
120
1205
0.99
0.00
4.5
4.4
1.89
1.97
mu/l
0.23
111
1102
7
71
0.99
0.00
1.1
1.5
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
4.21
—
0
9
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
20.4
—
0.68
—
0
7
0
7
0.00
-0.00
0.0
1.0
—
167.09
—
0
7
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.8
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.5
—
1.09
—
0
6
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.4
—
—
—
0
0
33
330
1.00
-0.00
1.8
3.5
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
6
0.00
-0.00
0.0
2.3
—
2090.83
—
0
6
0
8
0.00
-0.00
0.0
1.8
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
10.11
—
0
7
0
5
0.00
-0.00
0.0
1.0
—
55.00
—
0
5
0
7
0.00
-0.00
0.0
3.9
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.4
—
9.40
—
0
5
0
9
0.00
-0.00
0.0
46.0
—
123.98
—
0
9
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0

Mortality – FinRegistry

Association

Association between endpoint Q17_CONGEN_MALFO_OESOPHAGUS and mortality.

Females

Parameter HR [95% CI] p-value
Q17_CONGEN_MALFO_OESOPHAGUS 1.319 [0.99, 1.76] 0.062
Birth year 0.992 [0.98, 1.0] 0.098

During the follow-up period (1.1.1998 — 31.12.2019), 92 out of 492 females with Q17_CONGEN_MALFO_OESOPHAGUS died.

Males

Parameter HR [95% CI] p-value
Q17_CONGEN_MALFO_OESOPHAGUS 1.592 [1.12, 2.26] 0.009
Birth year 0.988 [0.98, 1.0] 0.033

During the follow-up period (1.1.1998 — 31.12.2019), 92 out of 579 males with Q17_CONGEN_MALFO_OESOPHAGUS died.

Mortality risk

Mortality risk for people of age

years, who have Q17_CONGEN_MALFO_OESOPHAGUS.

N-year risk Females Males
1 0.147% 0.364%
5 0.706% 2.122%
10 1.784% 5.113%
15 3.469% 8.932%
20 6.047% 14.384%

Relationships between endpoints

Index endpoint: Q17_CONGEN_MALFO_OESOPHAGUS – Congenital malformations of oesophagus

GWS hits: 1

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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