male genital tuberculosis: mycobacterium infections of the male reproductive tract (genitalia, male).
Other congenital malformations of male genital organs
DOID EFO Endpoint Browser PheWeb
Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleonly males |
226837 |
2. Check conditionsNone |
226837 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
264 |
4. Check minimum number of eventsNone |
264 |
5. Include endpointsNone |
264 |
6. Filter based on genotype QC (FinnGen only) |
264 |
Control definitions (FinnGen only)
- Control exclude
- Q17_CONGEN_MALFO_GENITAL_ORGANS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF12
- Parent code in ICD-10
- Q5
- Name in latin
- Aliae malformationes congenitae organorum genitalium masculinorum
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of male genital organs
based on the number of shared cases.
Similar with more cases:
- Congenital malformations of genital organs
- Congenital malformations, deformations and chromosomal abnormalities
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 264 | - | 264 |
| Unadjusted period prevalence (%) | 0.12 | - | 0.12 |
| Median age at first event (years) | 8.38 | - | 8.38 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 244
- Matched controls
- 2434
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q55.20
ICD-10 Finland
Retractile testis
2098.9
210.0
174
*
Q53.1
ICD-10 Finland
Undescended testicle, unilateral
+∞
55.3
51
*
KFH00
NOMESCO Finland
Operation for undescended or ectopic testis
456.5
40.3
39
*
KFH10
NOMESCO Finland
Orchiopexy
54.5
24.9
29
6
Q55.6
ICD-10 Finland
Other congenital malformations of penis
+∞
21.1
20
*
Q55.1
ICD-10 Finland
Hypoplasia of testis and scrotum
+∞
13.7
13
*
Q55.00
ICD-10 Finland
Congenital Monorkism
+∞
12.6
12
*
Q53.2
ICD-10 Finland
Undescended testicle, bilateral
+∞
11.5
11
*
Q55.4
ICD-10 Finland
Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate
+∞
10.5
10
*
Q55.9
ICD-10 Finland
Congenital malformation of male genital organ, unspecified
+∞
10.5
10
*
Q53.9
ICD-10 Finland
Undescended testicle, unspecified
+∞
7.3
7
*
Q55.2
ICD-10 Finland
Other congenital malformations of testis and scrotum
+∞
7.3
7
*
G03GA01
ATC
chorionic gonadotrophin; parenteral
20.7
7.2
10
5
KF8AE
NOMESCO Finland
Ultrasound examination of scrotum
4.2
6.8
25
65
KFH50
NOMESCO Finland
Insertion of prosthetic replacement for testis
17.3
6.8
10
6
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS – Other congenital malformations of male genital organs
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).