male genital tuberculosis: mycobacterium infections of the male reproductive tract (genitalia, male).
Other congenital malformations of male genital organs
DOID EFO Endpoint Browser PheWeb
Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleonly males |
226754 |
2. Check conditionsNone |
226754 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
267 |
4. Check minimum number of eventsNone |
267 |
5. Include endpointsNone |
267 |
6. Filter based on genotype QC (FinnGen only) |
237 |
Control definitions (FinnGen only)
- Control exclude
- Q17_CONGEN_MALFO_GENITAL_ORGANS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF12
- Parent code in ICD-10
- Q5
- Name in latin
- Aliae malformationes congenitae organorum genitalium masculinorum
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of male genital organs
based on the number of shared cases.
Similar with more cases:
- Congenital malformations of genital organs
- Congenital malformations, deformations and chromosomal abnormalities
- Congenital malformations, deformations and chromosomal abnormalities
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 237 | - | 237 |
| Unadjusted period prevalence (%) | 0.11 | - | 0.11 |
| Median age at first event (years) | 8.75 | - | 8.75 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 267
- Matched controls
- 2670
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q55.20
ICD-10 Finland
Retractile testis
2153.3
234.4
193
*
Q53.1
ICD-10 Finland
Undescended testicle, unilateral
+∞
60.8
56
*
KFH00
NOMESCO Finland
Operation for undescended or ectopic testis
+∞
50.7
47
*
Q55.6
ICD-10 Finland
Other congenital malformations of penis
+∞
25.4
24
*
KFH10
NOMESCO Finland
Orchiopexy
24.9
23.7
33
15
Q55.1
ICD-10 Finland
Hypoplasia of testis and scrotum
+∞
15.8
15
*
Q55.00
ICD-10 Finland
Congenital Monorkism
+∞
14.7
14
*
KF8AE
NOMESCO Finland
Ultrasound examination of scrotum
4.9
14.2
33
74
Q53.2
ICD-10 Finland
Undescended testicle, bilateral
+∞
13.7
13
*
Q55.9
ICD-10 Finland
Congenital malformation of male genital organ, unspecified
+∞
9.4
9
*
G03GA01
ATC
chorionic gonadotrophin; parenteral
25.0
9.0
12
5
KFH50
NOMESCO Finland
Insertion of prosthetic replacement for testis
51.7
8.7
10
*
KGH20
NOMESCO Finland
Correction of induration or curvature of penis
+∞
8.4
8
*
Q53.9
ICD-10 Finland
Undescended testicle, unspecified
+∞
8.4
8
*
Q55.4
ICD-10 Finland
Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate
+∞
8.4
8
*
Q55.2
ICD-10 Finland
Other congenital malformations of testis and scrotum
+∞
7.3
7
*
J01EA01
ATC
trimethoprim; systemic
3.8
6.7
21
59
G03BA03
ATC
testosterone; systemic, rectal, sublingual, transdermal
3.7
6.3
20
57
Q53
ICD-10 Finland
Undescended testicle
+∞
6.3
6
*
K21.0
ICD-10 Finland
Gastro-oesophageal reflux disease with oesophagitis
3.9
6.0
18
49
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
33
152
2.34
4.47
2.6
2.2
4.77
4.00
u/l
0.37
23
100
26
116
2.38
3.78
2.7
2.3
9.21
5.36
iu/l
0.79
20
66
5
7
7.25
2.56
3.0
3.0
63.60
48.43
nmol/l
—
5
7
115
909
1.47
2.41
12.2
13.6
1.22
1.22
mmol/l
0.78
106
864
91
699
1.46
2.16
3.2
3.8
70.87
69.52
nmol/l
0.20
85
661
117
945
1.42
2.11
11.5
12.5
1.21
1.22
mmol/l
0.39
106
868
14
62
2.33
2.11
1.1
1.1
—
10.31
—
0
8
11
44
2.56
2.04
6.5
6.0
1.86
2.19
ug/l
0.21
11
44
202
1828
1.43
1.73
13.6
15.1
4.00
3.99
mmol/l
0.28
193
1774
45
314
1.52
1.70
2.6
5.2
1.24
1.96
mg/l
0.69
34
223
146
1257
1.36
1.68
4.3
4.0
36.02
38.15
mmol/mol
2.58
140
1196
146
1264
1.34
1.58
3.8
3.0
14.66
14.71
pmol/l
0.09
131
1171
61
460
1.42
1.56
2.5
3.4
2.40
2.40
mmol/l
0.07
54
426
88
711
1.35
1.49
3.8
3.5
0.00
0.00
estimate
—
9
109
71
555
1.38
1.48
5.4
4.2
0.29
0.19
e6/l
0.17
58
431
170
1516
1.33
1.45
4.2
3.3
2.16
2.03
mu/l
0.66
156
1414
200
1828
1.37
1.45
13.8
15.1
139.45
139.53
mmol/l
0.21
193
1787
17
96
1.82
1.42
1.6
1.9
—
—
—
0
0
37
260
1.49
1.37
1.9
2.1
—
—
—
0
0
5
17
2.98
1.36
1.2
1.0
—
—
—
0
0
5
17
2.98
1.36
3.6
2.5
2.04
2.60
nmol/l
—
5
17
207
1913
1.37
1.31
14.9
17.4
13.46
13.50
%
0.10
200
1889
85
699
1.32
1.26
3.8
3.5
0.00
0.00
estimate
—
9
117
26
173
1.56
1.23
1.3
1.4
—
—
—
0
0
6
26
2.34
1.19
1.5
1.9
—
—
—
0
0
0
35
0.00
1.16
0.0
5.8
—
—
—
0
0
0
35
0.00
1.16
0.0
5.8
—
—
—
0
0
75
613
1.31
1.15
2.5
3.5
—
—
—
0
0
47
358
1.38
1.15
5.0
3.6
0.43
0.37
e6/l
0.11
30
209
8
41
1.98
1.09
2.1
5.0
57.75
48.07
%
—
8
41
5
21
2.41
1.09
1.2
2.0
—
—
—
0
0
7
32
2.22
1.09
1.3
2.4
—
—
—
0
0
84
706
1.28
1.04
5.6
5.0
0.00
0.00
estimate
—
10
122
66
539
1.30
1.02
10.4
7.8
1.05
1.23
inr
3.71
19
130
19
125
1.56
0.97
1.1
1.1
—
—
—
0
0
46
360
1.34
0.96
4.6
3.9
0.70
0.52
e6/l
0.20
29
214
6
27
2.25
0.94
1.0
1.3
—
—
—
0
0
41
317
1.35
0.93
4.1
4.0
0.00
0.01
estimate
—
9
109
6
28
2.17
0.92
1.0
1.0
—
—
—
0
0
54
438
1.29
0.88
11.6
8.8
1.61
1.07
mmol/l
0.98
37
319
6
30
2.02
0.87
1.2
2.0
—
—
—
0
0
14
89
1.60
0.83
1.4
1.4
—
—
—
0
0
117
1044
1.21
0.82
7.9
8.3
6.37
6.42
mmol/l
0.09
110
1004
29
217
1.38
0.81
2.0
2.1
—
—
—
0
0
11
66
1.70
0.80
1.7
1.4
—
—
—
0
0
47
380
1.29
0.79
4.0
3.9
1.32
1.69
ug/l
0.74
37
339
10
60
1.69
0.73
1.8
2.2
—
—
—
0
0
75
648
1.22
0.72
6.1
4.5
—
—
—
0
0
7
40
1.77
0.72
1.7
2.2
—
—
—
0
0
5
26
1.94
0.71
2.0
1.7
—
—
—
0
0
132
1205
1.19
0.70
6.6
7.1
114.73
122.02
u/l
0.44
120
1146
86
762
1.19
0.63
6.6
9.1
20.33
21.65
umol/l
0.11
81
726
0
20
0.00
0.60
0.0
1.0
—
—
—
0
0
0
22
0.00
0.59
0.0
1.0
—
—
—
0
0
21
158
1.36
0.59
1.4
1.7
373.33
453.99
pmol/l
0.72
15
142
55
471
1.21
0.58
3.8
3.3
—
—
—
0
0
12
81
1.50
0.58
2.1
2.5
—
—
—
0
0
66
749
0.84
0.56
1.9
1.7
1.85
3.52
u/ml
0.59
12
122
12
82
1.49
0.55
2.2
2.5
—
—
—
0
0
27
214
1.29
0.55
1.8
2.0
—
—
—
0
0
15
108
1.41
0.54
4.7
6.5
—
—
—
0
0
9
64
1.42
0.52
1.6
2.4
—
—
—
0
0
14
102
1.39
0.48
3.6
2.8
—
—
—
0
0
7
49
1.44
0.46
3.7
5.4
94.29
95.39
%
—
7
49
9
131
0.68
0.44
3.7
1.6
—
—
—
0
0
153
1448
1.13
0.43
3.4
3.4
4.33
4.43
mmol/l
0.65
144
1383
20
159
1.28
0.41
11.0
14.6
13.79
14.62
kpa
0.32
20
150
20
159
1.28
0.41
11.0
14.6
5.07
5.37
kpa
1.00
20
149
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
15
0.00
0.41
0.0
1.1
—
—
—
0
0
0
16
0.00
0.41
0.0
1.1
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
0
17
0.00
0.41
0.0
1.0
—
—
—
0
0
5
34
1.48
0.40
1.2
1.3
—
—
—
0
0
136
1282
1.12
0.40
3.1
2.8
5.59
5.66
mmol/l
0.23
122
1177
18
142
1.29
0.39
2.7
2.7
—
—
—
0
0
16
124
1.31
0.39
2.7
2.7
—
—
—
0
0
12
159
0.74
0.39
2.4
1.8
—
—
—
0
0
39
337
1.18
0.39
2.1
2.4
—
—
—
0
0
0
19
0.00
0.39
0.0
1.1
—
—
—
0
0
12
158
0.75
0.38
2.4
1.8
172.40
178.72
u/ml
—
5
68
9
68
1.33
0.38
2.4
2.5
—
—
—
0
0
9
68
1.33
0.38
2.4
2.5
—
—
—
0
0
9
71
1.28
0.36
1.0
1.1
—
—
—
0
0
5
76
0.65
0.36
1.0
1.0
6.96
7.34
kpa
—
5
69
210
2039
1.14
0.35
12.0
12.2
29.55
24.46
mg/l
1.02
153
1390
6
43
1.40
0.35
1.7
1.9
—
—
—
0
0
20
163
1.25
0.35
11.0
14.3
-0.29
0.47
mmol/l
0.49
14
137
12
91
1.33
0.34
1.2
1.1
—
—
—
0
0
16
128
1.27
0.32
1.4
1.3
—
—
—
0
0
7
54
1.30
0.30
1.7
1.9
—
—
—
0
0
32
279
1.17
0.30
5.6
6.2
1825.48
1071.67
ng/l
0.56
27
227
7
55
1.28
0.30
1.1
1.5
—
—
—
0
0
8
109
0.73
0.29
1.4
1.3
—
—
—
0
0
132
1259
1.10
0.29
3.7
4.5
6.56
7.63
mm/h
0.78
121
1177
24
278
0.85
0.27
3.5
4.0
7.82
62.57
mg/mmol
0.51
19
207
143
1373
1.09
0.26
3.3
3.2
1.30
1.26
mmol/l
0.24
135
1299
5
75
0.66
0.26
1.0
1.0
3.22
3.08
kpa
—
5
68
9
72
1.26
0.26
1.0
1.1
—
—
—
0
0
9
76
1.19
0.25
2.0
1.5
267.78
322.21
mu/l
—
9
76
204
1992
1.10
0.25
8.9
10.1
33.51
31.69
u/l
0.36
195
1941
5
38
1.32
0.23
1.2
1.3
—
—
—
0
0
32
286
1.14
0.23
4.0
3.7
21.16
22.54
%
—
9
99
5
40
1.25
0.22
6.2
4.5
20.80
23.75
umol/l
—
5
40
20
230
0.86
0.22
1.1
1.1
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.9
—
—
—
0
0
0
10
0.00
0.21
0.0
4.3
—
—
—
0
0
0
12
0.00
0.21
0.0
2.6
—
3.54
—
0
12
16
187
0.85
0.21
1.3
1.2
7.95
7.38
u/ml
0.04
11
146
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
0
13
0.00
0.21
0.0
1.0
—
—
—
0
0
0
13
0.00
0.21
0.0
4.8
—
0.57
—
0
7
0
13
0.00
0.21
0.0
2.2
—
—
—
0
0
0
14
0.00
0.20
0.0
1.6
—
27.14
—
0
14
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
32
289
1.12
0.20
3.3
3.9
205.47
1223.54
ng/l
2.00
23
198
40
367
1.11
0.19
2.2
2.5
—
—
—
0
0
71
670
1.08
0.19
3.3
3.5
113.95
112.97
ug/l
0.01
65
639
33
300
1.11
0.19
10.4
14.9
5.81
6.05
mmol/l
0.13
33
294
41
378
1.10
0.18
2.0
1.7
102.15
100.09
pmol/l
0.10
20
195
7
62
1.13
0.17
2.9
2.5
—
—
—
0
0
7
62
1.13
0.17
2.1
4.0
—
—
—
0
0
7
62
1.13
0.17
2.9
2.5
—
—
—
0
0
5
67
0.74
0.17
8.8
4.0
0.25
0.19
e9/l
—
5
46
5
67
0.74
0.17
1.0
1.2
—
—
—
0
0
5
68
0.73
0.17
9.0
3.9
285.80
539.09
e6/l
—
5
45
44
409
1.09
0.17
2.6
3.6
—
—
—
0
0
8
68
1.18
0.17
3.8
13.4
23.03
24.30
mmol/l
—
8
62
41
382
1.09
0.15
2.5
3.1
76.68
49.97
ng/l
0.18
22
219
238
2355
1.10
0.14
17.4
18.6
42.01
41.28
%
1.46
223
2256
238
2357
1.09
0.12
16.7
17.7
253.88
255.84
e9/l
0.18
227
2258
48
454
1.07
0.12
9.0
10.6
1.69
1.27
mmol/l
0.65
36
366
11
127
0.86
0.12
2.0
1.8
—
—
—
0
0
23
211
1.10
0.11
2.7
2.6
0.52
0.74
ug/l
—
10
117
127
1240
1.05
0.11
9.0
9.4
99.85
100.10
ml/min/173m2
0.04
94
902
132
1290
1.05
0.11
8.2
13.5
3.72
3.58
e9/l
0.33
104
1052
238
2359
1.08
0.11
16.7
17.6
4.85
4.80
e12/l
0.70
227
2255
238
2360
1.08
0.10
17.0
18.0
142.28
140.45
g/l
0.94
232
2334
5
48
1.04
0.09
1.0
1.9
—
—
—
0
0
5
48
1.04
0.09
1.2
2.0
—
—
—
0
0
14
126
1.12
0.09
9.4
14.5
133.07
130.06
g/l
0.18
14
121
122
1196
1.04
0.08
6.1
11.1
33.67
34.19
%
0.15
114
1156
31
293
1.07
0.08
2.1
1.9
1.53
1.41
%
0.41
26
270
120
1177
1.04
0.08
5.9
10.9
50.59
50.12
%
0.14
112
1139
146
1437
1.04
0.08
3.4
3.3
1.26
1.29
mmol/l
0.35
138
1359
6
75
0.80
0.07
2.8
1.4
—
—
—
0
0
6
75
0.80
0.07
2.8
1.4
—
—
—
0
0
147
1449
1.03
0.07
3.7
3.5
2.73
2.76
mmol/l
0.16
140
1364
8
93
0.86
0.07
1.4
1.8
—
—
—
0
0
24
228
1.06
0.05
12.5
10.3
106.21
104.53
mmol/l
1.37
24
228
77
786
0.97
0.05
2.0
1.8
—
—
—
0
0
22
229
0.96
0.03
16.5
13.7
1.29
1.42
mmol/l
0.54
22
217
11
116
0.95
0.00
2.4
2.2
—
22.32
—
0
5
13
127
1.02
0.00
3.8
1.7
—
—
—
0
0
14
137
1.02
0.00
1.5
1.4
—
—
—
0
0
30
295
1.02
0.00
2.7
5.1
379.24
1833.98
umol/l
0.48
25
275
202
2017
1.01
0.00
3.3
3.7
—
—
—
0
0
14
144
0.97
0.00
1.2
1.2
—
—
—
0
0
6
65
0.92
0.00
7.5
4.2
19.83
10.55
%
—
6
65
5
51
0.98
0.00
4.2
4.1
2.50
17.76
u/ml
—
5
51
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
5
57
0.87
-0.00
1.4
2.4
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
8.60
—
0
5
0
5
0.00
-0.00
0.0
1.2
—
610.20
—
0
5
0
7
0.00
-0.00
0.0
3.9
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
6
0.00
-0.00
0.0
5.2
—
—
—
0
0
9
99
0.91
-0.00
18.1
12.2
1.41
1.43
%
—
9
99
9
94
0.96
-0.00
18.1
12.7
0.64
0.62
%
—
9
94
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
4.62
—
0
6
0
8
0.00
-0.00
0.0
1.0
—
19.50
—
0
8
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
6
64
0.94
-0.00
7.5
4.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
3.9
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
40.00
—
0
6
0
6
0.00
-0.00
0.0
1.7
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS – Other congenital malformations of male genital organs
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).