No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
247 |
4. Check minimum number of eventsNone |
247 |
5. Include endpointsNone |
247 |
6. Filter based on genotype QC (FinnGen only) |
233 |
Control definitions (FinnGen only)
- Control exclude
- AB1_INTESTINAL_INFECTIONS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Typhoid and paratyphoid fevers
based on the number of shared cases.
Similar with more cases:
- Intestinal infectious diseases
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
- Any prescribed medicine buy
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 233 | 148 | 85 |
| Unadjusted period prevalence (%) | 0.05 | 0.05 | 0.04 |
| Median age at first event (years) | 45.29 | 43.72 | 48.03 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 247
- Matched controls
- 2470
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A01
ICD-10 Finland
Typhoid and paratyphoid fevers
+∞
70.2
64
*
A01.0
ICD-10 Finland
Typhoid fever
+∞
35.3
33
*
00210
ICD-8 Finland
Paratyphoid fever B
+∞
29.8
28
*
A09
ICD-10 Finland
Other gastroenteritis and colitis of infectious and unspecified origin
4.6
19.8
55
145
A01.4
ICD-10 Finland
Paratyphoid fever, unspecified
+∞
17.9
17
*
SPAT1336
SPAT
Request for examination
5.8
12.6
24
45
M01.3*A01.4
ICD-10 Finland
Arthritis in typhoid or paratyphoid fever
+∞
11.5
11
*
00299
ICD-8 Finland
Paratyphoid fever unspecified
+∞
11.5
11
*
I39.8*A01.0
ICD-10 Finland
Endocarditis in typhoid fever
+∞
11.5
11
*
A60
ICPC
General and Unspecified, Result test/procedure
5.0
11.2
25
54
A98
ICD-10 Finland
Other viral haemorrhagic fevers, not elsewhere classified
15.9
9.6
15
10
00199
ICD-8 Finland
Typhoid fever, Unspecified
+∞
9.4
9
*
L28
ICPC
Limited function/disability (L)
2.7
9.4
58
249
EB1AA, ,
SPAT
3.7
9.0
30
89
R05
ICPC
Cough
2.4
8.6
77
393
A01.1
ICD-10 Finland
Paratyphoid fever A
+∞
8.4
8
*
A48
ICPC
General and Unspecified, Clarification/discussion RFE/demand
3.6
8.2
28
84
Z2221
NOMESCO Finland
Medical doctor
2.3
7.9
83
451
M54.9
ICD-10 Finland
Dorsalgia, unspecified
2.8
7.9
43
172
R50.9
ICD-10 Finland
Fever, unspecified
2.7
7.8
47
198
N02AX02
ATC
tramadol; systemic, rectal
2.1
7.6
118
747
SPAT1342
SPAT
Referral to specialised care
13.9
7.5
12
9
0029X
ICD-9 Finland
Typhoid and paratyphoid fevers, Paratyphoid fever, unspecified
+∞
7.3
7
*
0022A
ICD-9 Finland
Typhoid and paratyphoid fevers, Paratyphoid fever B
+∞
7.3
7
*
00220
ICD-8 Finland
Paratyphoid fever C
+∞
7.3
7
*
0020A
ICD-9 Finland
Typhoid and paratyphoid fevers, Typhoid fever
+∞
7.3
7
*
M54.8
ICD-10 Finland
Other dorsalgia
4.2
7.3
20
51
N03AX16
ATC
[U] pregabalin
2.3
7.3
70
365
WX700
NOMESCO Finland
Respiratory and circulatory monitoring
2.6
6.9
45
196
A01
ICPC
Pain general/multiple sites
2.9
6.9
35
134
L02
ICPC
Back symptom/complaint
2.8
6.9
36
140
R4110
NOMESCO Finland
Physiotherapy
2.2
6.9
78
434
T45
ICPC
Metabolic, Observ/health educat/advice/diet
17.3
6.8
10
6
J18.9
ICD-10 Finland
Pneumonia, unspecified
2.2
6.7
65
340
A02.1
ICD-10 Finland
Salmonella sepsis
+∞
6.3
6
*
A28
ICPC
Limited function/disability NOS
2.4
6.1
46
215
R02
ICPC
Shortness of breath/dyspnoea
2.5
6.0
40
176
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
60
293
2.38
7.27
2.8
2.7
4.54
3.19
e6/l
0.18
17
149
115
762
1.95
6.16
2.0
1.9
95.00
95.68
pmol/l
0.05
61
408
137
963
1.95
6.16
7.2
5.5
1.21
1.21
mmol/l
0.55
128
807
30
113
2.88
6.09
1.7
1.5
—
—
—
0
0
59
310
2.19
5.93
2.8
2.5
0.97
1.17
e6/l
0.18
17
166
17
48
3.73
5.43
1.2
1.1
—
—
—
0
0
45
219
2.29
5.41
8.3
6.0
104.60
103.92
mmol/l
0.41
45
219
64
359
2.06
5.40
3.9
3.5
1456.87
213.36
ng/l
0.42
45
278
15
30
5.25
5.35
1.1
1.4
—
—
—
0
0
15
30
5.25
5.35
1.1
1.4
—
—
—
0
0
151
1137
1.84
5.10
10.5
9.2
3.97
4.00
e9/l
0.06
127
1002
122
873
1.79
4.77
6.5
4.9
1.20
1.21
mmol/l
1.50
114
800
41
206
2.19
4.55
1.8
1.7
—
—
—
0
0
40
199
2.21
4.55
1.9
1.6
—
—
—
0
0
14
32
4.57
4.51
1.1
1.2
—
—
—
0
0
137
1026
1.75
4.48
5.4
5.6
10.26
11.29
umol/l
1.12
131
972
22
85
2.74
4.27
3.7
3.0
24.71
24.62
mmol/l
0.05
22
85
185
1526
1.85
4.20
8.0
6.8
77.84
77.29
u/l
0.07
178
1430
24
100
2.55
4.03
1.8
1.3
—
—
—
0
0
50
291
1.90
3.71
1.8
1.7
—
—
—
0
0
32
158
2.18
3.71
8.9
6.4
1.24
1.31
mmol/l
0.19
32
153
68
438
1.76
3.64
1.3
1.2
0.59
1.24
u/ml
1.58
12
125
112
827
1.65
3.61
2.5
2.3
79.68
76.62
nmol/l
0.43
104
740
128
980
1.64
3.56
3.6
3.5
0.00
0.00
estimate
-0.00
16
201
144
1139
1.63
3.48
6.2
3.9
6.50
6.57
mmol/l
0.15
134
1049
23
102
2.38
3.41
1.6
1.7
—
—
—
0
0
33
172
2.06
3.34
10.6
6.9
118.36
121.80
g/l
0.42
33
167
16
62
2.69
3.11
2.3
1.4
—
—
—
0
0
36
201
1.93
3.02
10.1
6.5
5.06
5.17
kpa
0.35
36
193
36
201
1.93
3.02
10.1
6.5
11.73
12.43
kpa
0.44
36
193
127
1000
1.56
2.95
3.7
3.5
0.00
0.00
estimate
-0.00
14
188
16
64
2.60
2.93
3.6
3.6
1.79
1.66
%
0.24
16
59
76
535
1.61
2.85
3.2
2.7
0.15
0.44
e6/l
2.05
51
392
41
247
1.79
2.72
2.2
2.1
20.73
23.51
%
0.61
35
214
11
35
3.24
2.68
1.2
1.4
—
—
—
0
0
124
991
1.50
2.57
5.9
4.7
0.00
0.00
estimate
-0.00
14
191
5
8
6.35
2.38
1.2
1.1
37.40
29.13
umol/l
—
5
8
113
899
1.47
2.33
12.0
13.8
1.20
1.25
inr
0.20
25
266
16
74
2.24
2.20
3.1
2.2
—
—
—
0
0
172
1501
1.48
2.11
4.9
3.8
14.12
10.98
mm/h
1.83
164
1385
89
688
1.46
2.08
3.1
2.9
—
—
—
0
0
177
1556
1.49
2.07
4.0
3.8
14.75
14.62
pmol/l
0.29
171
1407
19
99
2.00
1.96
1.4
1.9
—
—
—
0
0
5
11
4.61
1.95
1.6
1.4
—
—
—
0
0
209
1914
1.60
1.91
15.1
12.1
84.87
82.82
ml/min/173m2
0.69
170
1571
111
908
1.40
1.86
3.6
2.4
—
—
—
0
0
107
873
1.40
1.81
2.8
2.7
142.61
109.18
ug/l
0.29
100
812
61
450
1.47
1.78
2.4
2.2
—
—
—
0
0
51
363
1.51
1.77
1.5
1.3
50.29
27.15
iu/ml
—
9
123
59
440
1.45
1.63
2.0
1.7
0.83
1.06
mg/l
0.50
47
350
8
33
2.47
1.55
1.0
1.2
—
—
—
0
0
49
356
1.47
1.54
1.4
1.3
10.89
12.63
u/ml
0.07
15
142
43
305
1.50
1.52
2.5
2.7
0.81
0.82
mmol/l
0.50
36
290
60
456
1.42
1.49
2.2
2.0
2.92
3.16
mg/l
0.25
55
391
11
53
2.13
1.40
1.4
1.1
—
—
—
0
0
11
53
2.13
1.40
1.4
1.1
—
—
—
0
0
20
120
1.73
1.39
1.6
1.9
—
—
—
0
0
17
98
1.79
1.35
1.0
1.0
—
—
—
0
0
6
24
2.54
1.31
6.7
4.3
—
—
—
0
0
6
24
2.54
1.31
1.3
1.3
—
—
—
0
0
17
99
1.77
1.31
1.6
1.4
—
—
—
0
0
190
1753
1.36
1.24
24.4
15.6
14.40
14.89
%
0.74
190
1730
6
26
2.34
1.19
1.2
1.0
—
—
—
0
0
66
531
1.33
1.15
2.2
3.0
492.46
1218.32
ng/l
3.49
61
453
26
178
1.51
1.11
2.8
2.1
0.20
0.23
g/l
1.30
21
167
18
113
1.64
1.09
6.9
5.7
25.33
24.67
mmol/l
0.29
18
107
10
52
1.96
1.07
1.2
1.2
—
40.75
—
0
6
7
34
2.09
1.03
2.0
1.6
—
—
—
0
0
223
2135
1.46
0.96
20.5
14.6
76.30
75.28
umol/l
0.13
223
2135
197
1851
1.32
0.96
5.1
4.6
1.83
1.90
mu/l
0.40
191
1694
213
2027
1.37
0.92
19.4
12.5
26.70
22.05
mg/l
1.05
178
1571
8
42
1.93
0.89
1.1
1.4
—
—
—
0
0
10
56
1.82
0.89
1.2
1.4
12.24
9.95
g/l
—
10
47
15
224
0.65
0.85
8.2
6.9
—
—
—
0
0
94
822
1.23
0.83
5.4
3.9
34.68
35.95
g/l
1.11
89
776
8
47
1.73
0.81
1.3
1.4
38.06
39.01
g/l
—
8
39
33
422
0.75
0.80
1.4
1.7
438.22
13966935.74
pmol/l
0.50
27
358
9
55
1.66
0.74
1.3
1.4
—
—
—
0
0
9
56
1.63
0.73
1.2
1.5
3.04
3.04
g/l
—
9
48
204
1947
1.27
0.72
4.7
4.4
6.05
5.87
mmol/l
0.93
197
1798
7
42
1.69
0.69
1.6
1.2
1.09
0.92
nmol/l
—
7
35
63
538
1.23
0.69
3.1
3.6
2.84
8.03
mg/mmol
2.64
33
341
10
62
1.64
0.66
1.2
1.5
—
—
—
0
0
10
62
1.64
0.66
1.2
1.5
7.86
7.48
g/l
—
10
54
10
62
1.64
0.66
1.2
1.5
4.41
3.54
g/l
—
10
54
14
200
0.68
0.66
1.7
1.7
—
—
—
0
0
5
29
1.74
0.64
1.0
1.1
—
107.00
—
0
6
8
50
1.62
0.62
1.3
1.5
1.06
0.64
g/l
—
8
42
8
50
1.62
0.62
1.6
1.5
—
—
—
0
0
0
21
0.00
0.60
0.0
1.8
—
13.43
—
0
21
0
23
0.00
0.58
0.0
1.1
—
—
—
0
0
11
73
1.53
0.57
2.2
1.4
599.91
297.24
mu/l
0.60
11
66
8
55
1.47
0.56
2.1
1.7
—
—
—
0
0
14
100
1.42
0.53
2.4
3.0
0.26
0.12
e6/l
0.45
14
94
47
546
0.83
0.52
3.8
3.8
0.00
0.01
estimate
0.50
15
185
7
45
1.57
0.49
1.4
1.4
—
—
—
0
0
7
45
1.57
0.49
1.4
1.4
—
—
—
0
0
7
45
1.57
0.49
1.4
1.4
—
—
—
0
0
7
46
1.54
0.48
1.4
2.0
187.71
260.08
pmol/l
—
7
39
139
1306
1.15
0.47
3.8
3.2
—
—
—
0
0
16
121
1.34
0.45
3.0
2.8
83.06
61.40
u/ml
0.18
16
115
18
141
1.30
0.41
1.3
1.3
—
33.75
—
0
11
0
16
0.00
0.41
0.0
1.1
—
—
—
0
0
0
16
0.00
0.41
0.0
1.0
—
489.71
—
0
7
0
16
0.00
0.41
0.0
1.0
—
36.86
—
0
7
46
403
1.17
0.40
1.7
1.6
—
—
—
0
0
0
19
0.00
0.39
0.0
1.5
—
—
—
0
0
5
36
1.40
0.38
1.8
1.6
—
—
—
0
0
27
226
1.22
0.38
1.8
1.9
—
—
—
0
0
15
190
0.78
0.37
2.7
3.2
—
—
—
0
0
229
2250
1.24
0.34
27.4
18.8
39.56
40.36
%
1.19
219
2135
29
248
1.19
0.33
1.8
2.1
—
—
—
0
0
229
2251
1.24
0.33
26.8
18.8
255.09
250.81
e9/l
0.47
224
2196
229
2252
1.23
0.32
26.7
18.8
4.46
4.50
e12/l
0.57
224
2196
79
733
1.11
0.31
3.8
3.3
25.71
36.23
ng/l
0.52
52
481
7
55
1.28
0.30
3.1
2.4
—
—
—
0
0
39
347
1.15
0.29
1.5
1.4
—
—
—
0
0
5
73
0.68
0.26
1.4
1.4
—
—
—
0
0
64
595
1.10
0.24
3.0
2.3
52.39
64.10
u/l
0.75
59
540
82
772
1.09
0.24
3.7
3.6
—
—
—
0
0
193
1971
0.90
0.23
4.2
4.2
1.47
1.49
mmol/l
0.26
184
1825
141
1362
1.08
0.22
3.4
2.9
49.21
43.92
u/l
0.46
131
1276
0
11
0.00
0.21
0.0
2.7
—
—
—
0
0
0
10
0.00
0.21
0.0
1.4
—
—
—
0
0
0
10
0.00
0.21
0.0
1.3
—
—
—
0
0
0
12
0.00
0.21
0.0
4.0
—
—
—
0
0
0
13
0.00
0.21
0.0
1.0
—
—
—
0
0
0
13
0.00
0.21
0.0
1.5
—
—
—
0
0
8
71
1.13
0.16
1.6
1.8
—
—
—
0
0
53
499
1.08
0.15
4.1
4.5
2.06
2.41
ug/l
0.27
48
442
9
78
1.16
0.15
5.8
2.9
3257.33
1733.82
u/ml
—
9
73
10
85
1.18
0.12
1.6
1.5
—
—
—
0
0
186
1836
1.05
0.10
5.7
5.2
39.34
39.41
mmol/mol
0.04
181
1723
5
47
1.07
0.09
1.0
1.5
—
—
—
0
0
5
47
1.07
0.09
1.0
1.5
—
—
—
0
0
8
74
1.08
0.07
1.8
2.0
—
—
—
0
0
200
2018
0.95
0.07
5.1
4.7
2.79
2.80
mmol/l
0.10
190
1868
188
1899
0.96
0.07
3.8
3.8
1.48
1.28
mmol/l
2.25
178
1750
197
1987
0.96
0.07
4.3
4.3
4.74
4.72
mmol/l
0.07
188
1848
31
300
1.04
0.03
2.5
2.8
0.84
0.83
ug/l
0.02
18
178
39
400
0.97
0.03
3.7
4.3
22.32
22.03
%
0.03
14
177
33
336
0.98
0.00
1.4
1.8
902.76
1247.78
nmol/l
1.58
25
251
67
675
0.99
0.00
3.2
3.1
2.36
2.35
mmol/l
0.40
62
601
0
6
0.00
0.00
0.0
1.2
—
10.40
—
0
6
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
0.00
0.0
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
2.8
—
83.80
—
0
5
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
6
65
0.92
-0.00
1.2
1.7
—
—
—
0
0
0
9
0.00
-0.00
0.0
5.0
—
239.44
—
0
9
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
5
53
0.94
-0.00
1.0
1.3
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.0
—
1538.78
—
0
9
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
5
59
0.84
-0.00
1.2
1.4
—
—
—
0
0
0
8
0.00
-0.00
0.0
5.8
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
2.6
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
52.40
—
0
5
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_TYPHOIDPARATHYPHOID_WIDE – Typhoid and paratyphoid fevers
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).