Benign neoplasm: Prostate

CD2_BENIGN_PROSTATE

Endpoint definition

Report an error or suggest an improvement for this endpoint codes

Endpoint definition steps

FinnGen

Phenotype data

519972

1. Apply sex-specific rule

only males

226754

2. Check conditions

None

226754

3. Check pre-conditions, main-only, mode, registry filters

Registry filters:

  • Hospital discharge: ICD-10 D29.1&
  • Hospital discharge: ICD-9 2222
  • Cause of death: ICD-10 D29.1&
  • Cause of death: ICD-9 2222

2 out of 7 registries used, show all original rules.

241

4. Check minimum number of events

None

241

5. Include endpoints

None

241

6. Filter based on genotype QC (FinnGen only)

237

Control definitions (FinnGen only)

Controls for this endpoint are individuals that are not cases.

Extra metadata

Level in the ICD hierarchy
3
First used in FinnGen datafreeze
DF2
Parent code in ICD-10
D29
Name in latin
Neoplasma benignum prostatae

Case counts by codes

FinnGen case counts by registry codes:

generic upset plot

Upset plot

Full data table

Summary Statistics

-FinRegistry-

Key figures

All Female Male
Number of individuals
Whole population 1360 - 1360
Only index persons 1120 - 1120
Unadjusted period prevalence (%)
Whole population 0.04 - 0.04
Only index persons 0.04 - 0.04
Median age at first event (years)
Whole population - - 71.01
Only index persons - - 69.61

-FinnGen-

Key figures

All Female Male
Number of individuals 237 - 237
Unadjusted period prevalence (%) 0.11 - 0.11
Median age at first event (years) 68.06 - 68.06

-FinRegistry-

Age distribution of first events

-FinnGen-

Age distribution of first events

-FinRegistry-

Year distribution of first events

-FinnGen-

Year distribution of first events

-FinRegistry-

Cumulative Incidence Function

-FinnGen-

Cumulative Incidence Function

CodeWAS

CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.

This is a new tool, please reach out using the contact form for feedback and improvement ideas.

First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.

Matched cohort

Matched cases
241
Matched controls
2410
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
D29.1
ICD-10 Finland
Benign neoplasm: Prostate
4503599627370496.0
307.7
238
*
C61
ICD-10 Finland
Malignant neoplasm of prostate
5.1
34.5
114
361
NK6AN
NOMESCO Finland
Total body bone isotope imaging
11.6
32.6
36
36
8140/3-C61.9
ICD-O-3
Adenocarcinoma, NOS, of prostate gland
4.9
32.3
107
337
JN3CD
NOMESCO Finland
Abdominal CT examination both without and with contrast
8.9
30.7
42
56
ZXC96
NOMESCO Finland
Robot assisted procedure
10.5
29.0
34
37
KEC01
NOMESCO Finland
Percutaneous endoscopic radical prostatectomy
8.8
28.0
38
50
KE1BE
NOMESCO Finland
Rectal ultrasound examinaiton of prostata
3.5
17.8
81
302
116
Kela drug reimbursment
Prostate cancer
3.7
16.1
61
200
XJH00
NOMESCO Finland
Transanal ultrasonography
3.4
13.1
55
191
UKC02
NOMESCO Finland
Cystoscopy
2.6
11.1
91
455
Y77
ICPC
Malignant neoplasm prostate
3.9
10.3
32
90
Z03.89
ICD-10 Finland
Observation for other suspected diseases and conditions
3.1
9.6
46
172
KE1AT
NOMESCO Finland
Biopsy of prostata with ultrasoudnguidance
2.9
9.4
51
204
XKD00
NOMESCO Finland
Uroflowmetry
2.4
9.4
99
548
N40
ICD-10 Finland
Hyperplasia of prostate
2.3
9.1
148
979
PJD64
NOMESCO Finland
Laparoscopic dissection of iliac lymph nodes
9.9
7.9
15
16
SPAT1220
SPAT
Assessment of need for rehabilitation and/or rehabilitation plan
3.6
7.6
26
78
KC1EE
NOMESCO Finland
Ultrasound measurement of residual urine
2.2
7.4
83
462
G04CB01
ATC
finasteride; oral
2.2
7.4
83
464
L02AE02
ATC
leuprorelin; implant, parenteral
2.8
6.6
35
137
JN3BD
NOMESCO Finland
Extensive abdominal CT
2.7
6.2
34
136

LabWAS

OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
59
211
3.38
13.48
6.8
4.1
—
—
—
0
0
31
109
3.12
7.10
5.7
4.8
23.65
25.16
mmol/l
1.84
26
103
106
664
2.06
6.90
5.5
4.6
—
—
—
0
0
196
1557
2.39
6.60
8.1
5.5
2.89
2.95
ug/l
0.03
166
1370
20
63
3.37
5.45
1.7
1.6
—
—
—
0
0
30
125
2.60
5.04
2.3
3.1
3.95
6.70
e9/l
0.63
17
91
164
1280
1.88
4.91
5.7
4.2
—
—
—
0
0
94
621
1.84
4.84
2.9
2.2
445.84
380.90
u/l
0.11
89
580
30
134
2.41
4.37
5.2
4.0
—
—
—
0
0
36
178
2.20
4.16
5.3
3.9
4.82
5.13
kpa
1.33
31
172
26
113
2.46
4.01
1.8
2.1
1.16
2.23
ug/l
0.45
16
93
100
1322
0.58
4.01
3.8
4.6
—
—
—
0
0
36
181
2.16
3.99
4.1
3.5
—
—
—
0
0
27
512
0.47
3.51
2.4
3.3
—
—
—
0
0
11
28
4.07
3.33
2.5
2.9
—
—
—
0
0
28
139
2.15
3.21
2.7
3.3
—
—
—
0
0
12
38
3.27
2.89
2.3
2.0
—
—
—
0
0
94
697
1.57
2.84
2.4
2.4
—
—
—
0
0
58
818
0.62
2.62
8.3
10.7
0.00
0.00
e9/l
0.59
44
674
112
878
1.51
2.57
2.2
2.1
100.58
88.76
pmol/l
1.18
60
520
6
11
5.56
2.56
2.3
1.4
—
—
—
0
0
30
168
1.90
2.51
3.9
2.9
—
—
—
0
0
116
921
1.50
2.48
7.6
6.6
1.19
1.20
mmol/l
0.10
94
830
89
669
1.52
2.47
2.7
2.6
—
—
—
0
0
13
52
2.59
2.40
3.0
3.8
—
—
—
0
0
123
995
1.48
2.37
9.1
7.4
1.19
1.20
mmol/l
0.47
99
849
25
138
1.91
2.19
1.9
1.5
—
—
—
0
0
197
1771
1.62
2.18
20.8
18.6
27.06
29.39
mg/l
0.45
166
1500
113
1355
0.69
2.17
26.2
24.8
332.88
333.02
g/l
0.05
113
1344
156
1338
1.47
2.13
5.0
4.0
14.83
13.99
mm/h
0.21
138
1220
6
160
0.36
2.11
8.2
3.6
—
—
—
0
0
107
858
1.44
2.08
5.3
5.9
8.86
9.19
%
0.40
94
800
108
870
1.44
2.03
5.2
5.9
23.92
24.60
%
0.25
96
811
93
731
1.44
1.99
3.9
4.4
—
—
—
0
0
168
1472
1.47
1.98
8.3
8.3
76.99
82.69
u/l
0.98
158
1382
106
855
1.43
1.97
4.9
5.6
2.64
2.89
%
0.65
93
799
11
45
2.51
1.96
1.5
1.3
—
—
—
0
0
206
1888
1.63
1.92
25.2
22.2
139.53
139.63
mmol/l
0.19
194
1838
175
1550
1.47
1.91
4.3
3.8
2.02
2.08
mu/l
0.23
138
1342
91
718
1.43
1.89
2.7
2.7
201.15
197.52
ug/l
0.04
79
651
190
1714
1.51
1.86
5.0
4.9
4.15
4.20
mmol/l
0.25
151
1548
206
1892
1.61
1.85
25.4
22.4
4.04
4.05
mmol/l
0.23
194
1846
108
883
1.40
1.82
4.6
4.4
33.86
46.91
ng/l
0.87
89
712
8
29
2.82
1.81
1.1
2.5
—
—
—
0
0
105
856
1.40
1.80
4.7
5.6
60.62
59.55
%
0.43
92
804
15
74
2.10
1.79
1.2
3.8
36.71
37.19
g/l
—
10
60
62
460
1.47
1.77
1.8
1.8
1060.60
1139.29
nmol/l
0.23
40
355
15
75
2.07
1.73
1.1
1.3
—
—
—
0
0
113
939
1.38
1.70
4.9
5.5
0.19
0.21
e9/l
0.94
93
824
8
31
2.63
1.67
3.0
5.3
—
—
—
0
0
193
1760
1.48
1.66
5.5
5.5
2.42
2.46
mmol/l
0.21
157
1575
7
25
2.85
1.66
1.1
1.3
—
—
—
0
0
207
1918
1.56
1.62
30.0
27.1
230.24
224.09
e9/l
0.71
195
1866
207
1918
1.56
1.62
29.9
27.0
91.77
92.08
fl
0.39
199
1884
207
1919
1.56
1.60
30.0
27.1
4.45
4.47
e12/l
0.17
192
1862
207
1919
1.56
1.60
30.1
27.3
134.76
135.91
g/l
0.41
199
1882
207
1919
1.56
1.60
29.9
27.0
30.50
30.68
pg
0.66
199
1884
207
1919
1.56
1.60
30.1
27.1
7.27
7.09
e9/l
0.56
194
1862
207
1919
1.56
1.60
29.7
27.4
39.87
39.97
%
0.07
192
1768
70
541
1.41
1.60
3.5
3.1
6990.72
9627.22
umol/l
0.15
58
462
108
899
1.36
1.58
4.5
3.2
0.72
0.82
ug/l
0.73
85
646
11
51
2.21
1.53
2.5
1.3
—
—
—
0
0
101
836
1.36
1.52
5.1
5.6
0.65
0.57
%
0.80
88
786
6
21
2.90
1.51
3.2
2.3
—
—
—
0
0
34
230
1.56
1.49
2.2
2.2
69.09
66.24
e9/l
0.25
27
184
7
28
2.54
1.46
1.1
1.3
—
—
—
0
0
108
908
1.34
1.45
4.7
5.4
0.63
0.65
e9/l
0.26
91
779
182
1659
1.40
1.42
4.6
4.3
1.29
1.29
mmol/l
0.03
144
1475
102
854
1.34
1.40
5.4
6.1
—
—
—
0
0
108
913
1.33
1.38
4.7
5.4
0.04
0.04
e9/l
0.03
91
791
35
486
0.67
1.36
3.0
3.2
528.70
596.99
mosm/kgh2o
1.19
30
411
131
1141
1.32
1.35
20.5
19.2
1.24
1.40
inr
0.93
28
313
33
463
0.67
1.35
4.6
3.6
—
—
—
0
0
30
203
1.55
1.33
3.8
3.2
64.66
66.09
g/l
0.48
23
179
34
237
1.51
1.32
2.1
2.2
9.54
12.10
nmol/l
0.97
25
202
185
1701
1.38
1.29
5.5
4.8
1.32
1.31
mmol/l
0.14
150
1518
20
124
1.67
1.25
2.5
2.8
—
—
—
0
0
189
1747
1.38
1.24
5.9
5.2
6.04
6.24
mmol/l
1.56
150
1553
6
26
2.34
1.19
1.3
1.2
—
—
—
0
0
10
50
2.04
1.18
1.1
1.5
—
—
—
0
0
23
151
1.58
1.17
1.8
1.5
—
—
—
0
0
13
73
1.83
1.13
1.1
1.3
—
—
—
0
0
32
229
1.46
1.11
1.8
2.5
4.96
7.40
ug/l
0.72
22
200
107
927
1.28
1.08
4.8
5.6
1.66
1.82
e9/l
1.01
90
821
120
1058
1.27
1.04
6.3
9.6
4.92
4.39
e9/l
1.15
105
931
9
47
1.95
1.03
2.1
2.7
—
—
—
0
0
26
183
1.47
0.99
1.3
1.3
1.19
17.83
u/ml
—
7
57
25
176
1.47
0.95
1.2
1.2
226.67
353.33
titre
—
6
30
34
255
1.39
0.93
1.3
1.4
—
—
—
0
0
9
155
0.56
0.92
3.9
4.1
1.23
1.21
mmol/l
—
9
139
66
550
1.28
0.89
1.7
1.6
17.61
18.60
nmol/l
0.19
51
462
192
1810
1.30
0.87
22.0
17.9
—
—
—
0
0
16
104
1.58
0.87
1.0
1.1
—
—
—
0
0
6
31
1.96
0.85
1.7
1.1
—
—
—
0
0
179
1675
1.27
0.85
7.4
7.0
40.95
41.73
mmol/mol
0.46
139
1528
34
260
1.36
0.84
2.0
1.7
—
—
—
0
0
197
1867
1.30
0.83
12.4
11.6
25.33
26.12
u/l
0.22
181
1794
0
26
0.00
0.79
0.0
2.2
—
492.50
—
0
16
39
308
1.32
0.79
2.1
2.1
1.83
1.73
%
0.29
33
274
21
149
1.45
0.78
2.0
1.6
—
—
—
0
0
14
91
1.57
0.77
1.7
1.3
—
—
—
0
0
68
579
1.24
0.76
1.9
2.0
3.03
3.11
mg/l
0.08
55
495
25
185
1.39
0.75
2.2
1.6
—
—
—
0
0
65
553
1.24
0.74
3.3
3.3
—
—
—
0
0
5
25
2.02
0.73
1.0
1.2
—
—
—
0
0
7
40
1.77
0.72
1.1
1.2
—
—
—
0
0
129
1179
1.20
0.71
3.0
2.9
15.40
14.98
pmol/l
1.05
100
1013
45
368
1.27
0.71
3.6
3.3
2.29
0.59
e6/l
0.66
27
228
27
205
1.36
0.71
5.2
9.5
—
—
—
0
0
27
206
1.35
0.69
1.3
1.2
12.02
45.17
iu/ml
—
6
55
5
27
1.87
0.69
1.0
1.0
—
—
—
0
0
16
112
1.46
0.65
2.2
2.6
—
—
—
0
0
8
52
1.56
0.60
3.4
3.2
0.73
1.00
nmol/l
—
8
43
0
22
0.00
0.59
0.0
5.0
—
—
—
0
0
39
326
1.23
0.53
2.7
2.5
20.67
22.32
%
0.30
32
279
9
64
1.42
0.52
1.4
1.7
—
—
—
0
0
41
346
1.22
0.51
2.5
2.5
2.08
2.22
g/l
1.23
35
318
9
65
1.40
0.51
23.8
13.7
—
—
—
0
0
7
45
1.57
0.49
1.1
1.1
—
—
—
0
0
60
677
0.85
0.49
4.2
3.7
—
5.73
—
0
32
7
49
1.44
0.46
1.0
1.1
—
—
—
0
0
65
580
1.17
0.45
4.3
3.4
—
—
—
0
0
44
505
0.84
0.44
4.7
4.0
0.00
0.00
estimate
-0.00
13
158
51
448
1.18
0.43
5.6
6.5
—
—
—
0
0
47
410
1.18
0.43
4.0
3.8
—
—
—
0
0
5
32
1.57
0.42
4.6
1.5
90.52
88.61
%
—
5
32
13
171
0.75
0.41
4.9
6.1
24.08
24.02
mmol/l
0.02
13
164
0
17
0.00
0.41
0.0
2.4
—
508.33
—
0
12
33
386
0.83
0.40
1.7
1.7
1.35
1.69
mg/l
0.42
24
310
0
18
0.00
0.40
0.0
1.4
—
—
—
0
0
0
19
0.00
0.39
0.0
5.2
—
—
—
0
0
22
179
1.25
0.39
1.2
1.5
—
—
—
0
0
43
377
1.17
0.37
2.8
2.5
10.56
12.36
umol/l
0.93
37
348
10
134
0.74
0.36
7.1
10.0
—
—
—
0
0
6
42
1.44
0.36
1.2
1.2
12.28
27.04
u/l
—
6
35
34
390
0.85
0.34
5.8
4.3
1.02
1.02
kg/l
—
7
57
70
641
1.13
0.34
2.5
3.9
2.34
2.32
mmol/l
0.46
54
560
6
46
1.31
0.33
7.2
4.3
—
—
—
0
0
13
101
1.30
0.32
2.2
4.7
—
—
—
0
0
27
231
1.19
0.31
1.2
1.5
—
—
—
0
0
51
563
0.88
0.31
5.4
4.7
7.39
7.40
ph
—
8
106
8
66
1.22
0.27
1.8
1.7
38.00
48.28
nmol/l
—
8
60
70
751
0.90
0.26
5.6
4.0
92.74
171.11
e6/l
0.38
55
583
0
11
0.00
0.21
0.0
1.3
—
91.91
—
0
11
0
12
0.00
0.21
0.0
2.0
—
—
—
0
0
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
6
52
1.16
0.19
1.2
1.6
13.32
15.73
mg/l
—
6
45
25
223
1.14
0.19
2.8
4.2
5.68
5.73
kpa
0.10
25
212
84
881
0.93
0.19
4.4
3.8
0.00
0.00
estimate
-0.00
13
165
83
867
0.93
0.16
4.4
3.8
0.00
0.01
estimate
0.50
15
189
22
197
1.13
0.16
1.2
1.3
—
—
—
0
0
83
862
0.94
0.13
5.3
5.1
0.00
0.00
estimate
-0.00
14
174
68
709
0.94
0.12
5.0
4.0
24.40
10.98
mg/mmol
0.42
45
470
64
668
0.94
0.12
4.4
3.4
105.61
226.62
mg/l
0.47
42
464
12
136
0.88
0.11
4.6
4.3
0.00
0.18
%
—
6
51
15
167
0.89
0.11
1.7
1.5
—
—
—
0
0
11
96
1.15
0.10
1.1
1.4
—
—
—
0
0
13
143
0.90
0.07
1.2
1.4
—
—
—
0
0
93
910
1.04
0.07
5.4
5.1
33.95
34.44
g/l
0.30
81
853
15
138
1.09
0.06
3.9
4.1
1.67
0.46
%
—
9
58
9
103
0.87
0.06
6.9
4.3
—
—
—
0
0
22
232
0.94
0.05
1.5
1.3
—
—
—
0
0
61
621
0.98
0.03
5.0
3.4
0.19
0.43
e6/l
1.70
47
491
68
690
0.98
0.02
4.9
3.5
84.33
193.45
e6/l
0.51
54
555
68
671
1.02
0.02
4.4
3.3
7.66
7.81
mmol/l
0.09
51
541
15
156
0.96
0.00
4.0
4.1
1.00
0.96
%
—
9
69
46
466
0.98
0.00
1.3
1.3
—
—
—
0
0
15
148
1.01
0.00
3.9
4.2
0.11
0.11
%
—
9
61
34
338
1.01
0.00
2.2
1.9
—
—
—
0
0
19
189
1.01
0.00
3.0
3.1
5.45
4.38
kpa
0.42
19
178
46
464
0.99
0.00
1.5
1.8
171429029.63
25064989.05
pmol/l
0.40
35
387
12
117
1.03
0.00
2.8
3.5
24.00
24.98
mmol/l
0.49
12
112
27
265
1.02
0.00
1.9
1.4
2.39
2.88
g/l
0.70
17
157
18
184
0.98
0.00
3.4
3.9
—
—
—
0
0
15
146
1.03
0.00
2.3
3.3
132.80
126.84
g/l
0.48
15
141
0
5
0.00
0.00
0.0
1.4
—
70.80
—
0
5
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
1.19
—
0
5
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
17.76
—
0
5
0
5
0.00
0.00
0.0
1.8
—
—
—
0
0
0
5
0.00
0.00
0.0
5.0
—
54.20
—
0
5
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
3.2
—
12530.33
—
0
6
0
7
0.00
-0.00
0.0
1.1
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.4
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
4.3
—
—
—
0
0
8
84
0.95
-0.00
1.1
1.3
—
—
—
0
0
0
9
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
27.57
—
0
7
0
8
0.00
-0.00
0.0
1.3
—
254.00
—
0
8
0
6
0.00
-0.00
0.0
16.5
—
834.83
—
0
6
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
16.87
—
0
6
0
6
0.00
-0.00
0.0
22.7
—
1177.00
—
0
6
0
9
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
8
0.00
-0.00
0.0
2.9
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.6
—
—
—
0
0

Mortality – FinRegistry

Association

Association between endpoint CD2_BENIGN_PROSTATE and mortality.

Females

No data

Males

Parameter HR [95% CI] p-value
CD2_BENIGN_PROSTATE 1.364 [1.17, 1.6] < 0.001
Birth year 0.986 [0.98, 1.0] 0.004

During the follow-up period (1.1.1998 — 31.12.2019), 550 out of 1196 males with CD2_BENIGN_PROSTATE died.

Mortality risk

Mortality risk for people of age

years, who have CD2_BENIGN_PROSTATE.

N-year risk Females Males
1 No data 0.208%
5 No data 1.545%
10 No data 3.859%
15 No data 7.262%
20 No data 12.475%

Relationships between endpoints

Index endpoint: CD2_BENIGN_PROSTATE – Benign neoplasm: Prostate

GWS hits: -

Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
rg [CI]
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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