This is a non-core endpoint: only basic statistics are computed.
See these related core endpoints for full statistics:
Other congenital malformations of male genital organs
Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS_WIDE
No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleonly males |
226754 |
2. Check conditionsNone |
226754 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
298 |
4. Check minimum number of eventsNone |
298 |
5. Include endpointsNone |
298 |
6. Filter based on genotype QC (FinnGen only) |
267 |
Control definitions (FinnGen only)
- Control exclude
- Q17_CONGEN_MALFO_GENITAL_ORGANS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
- Parent code in ICD-10
- Q5
- Name in latin
- Aliae malformationes congenitae organorum genitalium masculinorum
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of male genital organs
based on the number of shared cases.
Similar with more cases:
- Congenital malformations, deformations and chromosomal abnormalities
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 267 | - | 267 |
| Unadjusted period prevalence (%) | 0.12 | - | 0.12 |
| Median age at first event (years) | 9.63 | - | 9.63 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
Not a core endpoint, no data to show.
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 298
- Matched controls
- 2980
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
Q55.20
ICD-10 Finland
Retractile testis
+∞
261.6
211
*
Q53.1
ICD-10 Finland
Undescended testicle, unilateral
+∞
61.6
57
*
KFH00
NOMESCO Finland
Operation for undescended or ectopic testis
+∞
51.6
48
*
Q55.6
ICD-10 Finland
Other congenital malformations of penis
+∞
25.4
24
*
KFH10
NOMESCO Finland
Orchiopexy
24.6
23.6
33
15
Q55.1
ICD-10 Finland
Hypoplasia of testis and scrotum
+∞
17.9
17
*
Q55.4
ICD-10 Finland
Other congenital malformations of vas deferens, epididymis, seminal vesicles and prostate
+∞
14.7
14
*
Q55.00
ICD-10 Finland
Congenital Monorkism
+∞
14.7
14
*
KF8AE
NOMESCO Finland
Ultrasound examination of scrotum
4.8
14.5
35
81
Q53.2
ICD-10 Finland
Undescended testicle, bilateral
+∞
13.6
13
*
Q55.9
ICD-10 Finland
Congenital malformation of male genital organ, unspecified
+∞
9.4
9
*
KFH50
NOMESCO Finland
Insertion of prosthetic replacement for testis
37.9
9.1
11
*
G03GA01
ATC
chorionic gonadotrophin; parenteral
24.9
9.0
12
5
Q53.9
ICD-10 Finland
Undescended testicle, unspecified
92.6
8.5
9
*
KGH20
NOMESCO Finland
Correction of induration or curvature of penis
+∞
8.4
8
*
Q55.2
ICD-10 Finland
Other congenital malformations of testis and scrotum
+∞
7.3
7
*
K21.0
ICD-10 Finland
Gastro-oesophageal reflux disease with oesophagitis
3.8
7.2
22
61
G03BA03
ATC
testosterone; systemic, rectal, sublingual, transdermal
3.5
7.0
24
72
Q53
ICD-10 Finland
Undescended testicle
+∞
6.3
6
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
38
162
2.54
6.03
2.5
2.2
5.29
4.01
u/l
0.58
26
108
29
123
2.50
4.65
2.6
2.3
9.10
5.06
iu/l
0.92
21
73
104
778
1.52
2.85
3.1
3.7
70.56
69.62
nmol/l
0.15
97
736
5
7
7.24
2.56
3.0
3.0
63.60
48.43
nmol/l
—
5
7
0
66
0.00
2.44
0.0
2.1
—
40.70
—
0
61
128
1026
1.43
2.39
12.2
12.9
1.22
1.22
mmol/l
0.48
117
973
131
1066
1.41
2.21
11.5
11.9
1.22
1.22
mmol/l
0.20
118
974
102
803
1.41
2.05
3.5
3.4
0.00
0.00
estimate
—
10
124
19
98
2.00
2.00
1.3
3.9
85.80
72.03
ml/min/173m2
—
5
39
69
510
1.46
1.94
2.6
3.5
2.40
2.39
mmol/l
0.16
62
469
167
1442
1.36
1.86
4.2
4.2
35.85
38.46
mmol/mol
4.41
161
1374
99
788
1.38
1.84
3.6
3.4
0.00
0.01
estimate
—
10
134
11
47
2.39
1.80
6.5
5.9
1.86
2.16
ug/l
0.19
11
47
227
2069
1.41
1.73
14.5
14.9
4.00
3.99
mmol/l
0.11
217
2008
31
199
1.62
1.65
1.3
1.4
—
—
—
0
0
52
376
1.46
1.63
3.5
3.4
1.02
1.02
kg/l
—
10
56
233
2141
1.40
1.63
16.2
17.1
13.45
13.56
%
0.35
226
2112
226
2068
1.38
1.61
14.7
15.0
139.57
139.52
mmol/l
0.14
217
2020
80
628
1.37
1.59
5.3
4.0
0.27
0.21
e6/l
0.11
62
486
98
797
1.34
1.56
5.2
4.8
0.00
0.00
estimate
-0.00
11
140
63
477
1.41
1.55
4.0
4.0
1.75
1.70
ug/l
0.04
53
426
163
1427
1.31
1.54
3.8
3.0
14.53
14.71
pmol/l
0.43
147
1326
19
109
1.79
1.50
1.8
1.9
—
—
—
0
0
54
401
1.42
1.48
4.8
3.5
0.43
0.37
e6/l
0.14
32
232
14
74
1.94
1.41
1.1
1.1
—
8.87
—
0
10
54
408
1.40
1.35
4.4
3.7
0.67
0.52
e6/l
0.17
32
242
41
296
1.45
1.31
2.2
2.1
—
—
—
0
0
5
18
2.81
1.29
1.2
1.0
—
—
—
0
0
86
706
1.31
1.26
2.7
3.4
—
—
—
0
0
9
45
2.03
1.24
1.9
2.0
—
—
—
0
0
5
19
2.66
1.22
2.8
2.1
—
—
—
0
0
189
1720
1.27
1.18
4.2
3.3
2.19
2.03
mu/l
0.96
175
1605
5
20
2.52
1.15
3.6
2.3
2.04
3.82
nmol/l
—
5
20
12
66
1.85
1.10
2.3
2.0
—
—
—
0
0
47
360
1.36
1.10
3.4
5.3
1.26
1.92
mg/l
0.68
36
260
87
733
1.26
1.03
5.8
4.3
—
—
—
0
0
21
140
1.54
1.00
1.1
1.1
—
—
—
0
0
47
366
1.34
1.00
3.7
3.7
20.50
23.14
%
0.65
14
130
33
243
1.40
0.98
2.5
2.0
—
—
—
0
0
26
183
1.46
0.97
1.4
1.7
396.05
447.68
pmol/l
0.49
20
163
16
102
1.60
0.92
2.1
1.3
—
—
—
0
0
150
1357
1.21
0.89
6.5
7.1
111.65
119.40
u/l
0.54
138
1292
18
120
1.53
0.87
1.1
1.3
222.20
118.51
iu/ml
—
5
39
8
44
1.84
0.86
2.1
5.2
57.75
48.07
%
—
8
44
6
31
1.95
0.85
1.0
1.0
—
—
—
0
0
25
181
1.42
0.83
2.4
2.6
2.40
2.43
mmol/l
0.69
20
158
6
32
1.89
0.82
1.5
1.8
—
—
—
0
0
6
32
1.89
0.82
1.0
1.3
—
—
—
0
0
45
360
1.29
0.81
4.1
3.9
0.00
0.01
estimate
—
10
124
14
90
1.58
0.79
2.8
2.3
—
—
—
0
0
14
90
1.58
0.79
2.9
2.3
—
—
—
0
0
64
537
1.24
0.79
3.6
3.3
—
—
—
0
0
31
237
1.34
0.76
2.3
1.9
—
—
—
0
0
71
825
0.82
0.76
1.9
1.7
1.85
3.35
u/ml
0.54
12
137
58
484
1.25
0.75
11.4
8.7
1.58
1.10
mmol/l
0.92
40
355
17
117
1.48
0.73
3.6
2.8
—
—
—
0
0
7
40
1.77
0.71
1.3
2.5
—
—
—
0
0
9
59
1.54
0.69
1.9
1.8
—
—
—
0
0
5
27
1.87
0.68
1.2
1.9
—
—
—
0
0
11
70
1.59
0.66
2.2
2.2
—
—
—
0
0
177
1658
1.17
0.63
3.5
3.5
4.37
4.44
mmol/l
0.44
168
1585
11
71
1.57
0.63
1.7
1.4
—
—
—
0
0
152
1410
1.16
0.61
3.7
4.4
6.56
7.86
mm/h
1.16
140
1320
0
21
0.00
0.60
0.0
1.0
—
—
—
0
0
0
22
0.00
0.59
0.0
1.0
—
—
—
0
0
0
22
0.00
0.59
0.0
1.0
—
—
—
0
0
20
149
1.37
0.59
2.5
2.7
—
—
—
0
0
18
132
1.39
0.58
2.5
2.7
—
—
—
0
0
130
1196
1.15
0.57
8.0
8.0
6.33
6.48
mmol/l
0.31
123
1152
97
874
1.16
0.56
7.4
8.9
20.79
21.42
umol/l
0.05
92
834
11
74
1.51
0.54
3.3
2.4
—
—
—
0
0
11
74
1.51
0.54
3.3
2.4
—
—
—
0
0
6
39
1.55
0.53
1.2
2.2
—
—
—
0
0
20
258
0.76
0.53
1.1
1.1
—
—
—
0
0
43
364
1.21
0.51
2.1
2.4
—
—
—
0
0
33
272
1.24
0.50
2.9
2.6
0.50
0.74
ug/l
1.66
16
148
232
2237
1.17
0.49
9.6
9.9
33.09
32.23
u/l
0.17
222
2178
71
631
1.16
0.49
11.6
8.4
1.05
1.22
inr
3.84
19
152
51
441
1.19
0.49
1.8
1.7
103.40
98.39
pmol/l
0.34
25
230
46
394
1.20
0.49
2.1
2.5
—
—
—
0
0
24
192
1.27
0.46
10.1
14.0
-0.14
0.53
mmol/l
0.51
17
157
7
49
1.44
0.46
2.0
1.8
—
—
—
0
0
166
1576
1.12
0.41
3.4
3.2
1.30
1.27
mmol/l
0.15
158
1492
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
16
0.00
0.41
0.0
1.2
—
—
—
0
0
0
17
0.00
0.41
0.0
1.2
—
—
—
0
0
0
17
0.00
0.41
0.0
1.7
—
26.47
—
0
17
8
60
1.34
0.40
1.1
1.6
—
—
—
0
0
0
18
0.00
0.40
0.0
1.0
—
—
—
0
0
0
18
0.00
0.40
0.0
1.0
—
—
—
0
0
0
18
0.00
0.40
0.0
1.0
—
—
—
0
0
0
18
0.00
0.40
0.0
1.0
—
—
—
0
0
0
18
0.00
0.40
0.0
1.0
—
—
—
0
0
16
124
1.31
0.39
4.4
7.9
—
—
—
0
0
9
67
1.35
0.38
3.8
2.3
—
—
—
0
0
9
67
1.35
0.38
3.8
2.3
—
—
—
0
0
5
36
1.40
0.38
2.0
1.6
—
—
—
0
0
5
36
1.40
0.38
1.6
1.7
—
—
—
0
0
6
43
1.40
0.35
5.3
4.6
22.33
23.72
umol/l
—
6
43
11
83
1.34
0.32
2.4
1.5
297.91
314.48
mu/l
0.10
11
83
16
197
0.80
0.32
1.3
1.2
7.95
7.66
u/ml
0.02
11
154
7
54
1.30
0.30
3.7
5.2
94.29
94.48
%
—
7
54
148
1414
1.09
0.30
9.0
9.7
98.21
98.86
ml/min/173m2
0.11
109
1048
11
140
0.78
0.29
2.0
1.7
—
—
—
0
0
12
150
0.79
0.27
3.3
1.6
—
—
—
0
0
268
2639
1.15
0.27
18.3
18.5
42.10
43.04
%
0.22
252
2527
268
2640
1.15
0.26
17.7
17.7
254.77
255.19
e9/l
0.04
257
2533
5
71
0.70
0.26
1.0
1.2
—
—
—
0
0
29
327
0.87
0.24
3.2
4.1
6.84
56.08
mg/mmol
0.54
22
240
80
751
1.09
0.24
3.1
3.4
113.86
117.23
ug/l
0.05
74
715
268
2643
1.14
0.24
17.7
17.7
4.84
4.80
e12/l
0.60
257
2527
154
1485
1.08
0.23
3.2
2.9
5.58
5.69
mmol/l
0.44
140
1366
14
168
0.83
0.23
2.3
1.8
—
—
—
0
0
5
38
1.32
0.23
1.2
1.3
—
—
—
0
0
268
2644
1.14
0.23
18.0
18.0
142.35
140.53
g/l
1.00
262
2612
14
167
0.83
0.22
2.3
1.8
141.29
185.68
u/ml
—
7
72
0
11
0.00
0.21
0.0
1.8
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
4.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.3
—
—
—
0
0
37
336
1.12
0.21
3.3
4.3
215.08
1068.55
ng/l
1.94
25
234
0
13
0.00
0.21
0.0
2.5
—
3.42
—
0
13
0
13
0.00
0.21
0.0
1.2
—
—
—
0
0
10
80
1.26
0.20
1.0
1.1
—
—
—
0
0
10
80
1.26
0.20
1.0
1.1
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
—
—
0
0
233
2288
1.08
0.20
12.4
12.2
28.93
24.68
mg/l
0.89
170
1565
169
1642
1.07
0.20
3.5
3.4
1.27
1.29
mmol/l
0.31
161
1555
225
2209
1.08
0.18
3.4
3.7
—
—
—
0
0
7
61
1.15
0.17
2.9
2.2
—
—
—
0
0
170
1657
1.06
0.17
3.8
3.5
2.77
2.76
mmol/l
0.05
163
1561
8
69
1.16
0.16
4.5
3.4
—
—
—
0
0
12
102
1.18
0.15
1.2
1.2
—
—
—
0
0
12
139
0.86
0.14
2.3
2.2
—
16.17
—
0
8
10
117
0.85
0.13
16.4
10.9
1.66
1.39
%
—
10
117
49
464
1.07
0.12
2.9
3.4
—
—
—
0
0
14
158
0.88
0.12
1.2
1.2
—
—
—
0
0
16
143
1.13
0.11
3.4
1.7
—
—
—
0
0
16
143
1.13
0.11
1.4
1.3
—
—
—
0
0
36
338
1.07
0.11
11.4
14.3
5.61
6.02
mmol/l
0.27
36
331
147
1441
1.04
0.10
10.1
12.8
3.69
3.63
e9/l
0.13
115
1184
34
320
1.07
0.10
5.4
6.5
1705.03
1055.89
ng/l
0.50
29
259
5
44
1.14
0.10
1.2
1.3
—
—
—
0
0
35
331
1.07
0.09
2.2
1.9
1.53
1.46
%
0.25
30
306
5
60
0.83
0.08
2.8
1.8
—
—
—
0
0
5
63
0.79
0.08
12.2
4.1
25.60
26.37
%
—
5
63
7
67
1.05
0.08
8.9
4.1
—
—
—
0
0
7
68
1.03
0.08
8.9
4.0
18.43
10.34
%
—
7
68
6
71
0.84
0.07
10.3
3.8
266.50
580.09
e6/l
—
6
47
6
70
0.85
0.07
10.2
3.8
0.22
0.20
e9/l
—
6
48
10
112
0.89
0.07
16.4
11.3
0.67
0.62
%
—
10
112
52
503
1.04
0.06
10.5
9.8
1.71
1.32
mmol/l
0.66
40
405
9
104
0.86
0.06
1.6
1.7
—
—
—
0
0
14
152
0.92
0.06
1.5
1.4
—
—
—
0
0
87
856
1.02
0.04
1.9
1.8
—
—
—
0
0
11
119
0.92
0.04
1.5
1.3
—
—
—
0
0
132
1313
1.01
0.01
7.7
10.2
50.34
50.38
%
0.01
123
1269
34
346
0.98
0.00
3.5
4.6
377.48
4385.96
umol/l
1.03
29
321
26
255
1.02
0.00
14.7
13.5
1.23
1.48
mmol/l
1.12
26
243
26
256
1.02
0.00
11.8
10.2
106.50
104.52
mmol/l
1.84
26
256
134
1335
1.01
0.00
7.9
10.4
33.92
33.91
%
0.00
125
1289
0
7
0.00
0.00
0.0
3.9
—
—
—
0
0
0
8
0.00
0.00
0.0
1.8
—
—
—
0
0
0
7
0.00
0.00
0.0
3.9
—
—
—
0
0
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
19.50
—
0
8
0
7
0.00
0.00
0.0
1.4
—
—
—
0
0
5
52
0.96
0.00
1.2
2.1
—
—
—
0
0
5
49
1.02
0.00
1.0
1.9
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
4.62
—
0
6
0
5
0.00
-0.00
0.0
1.4
—
1.94
—
0
5
0
5
0.00
-0.00
0.0
1.2
—
610.20
—
0
5
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
7
79
0.88
-0.00
2.7
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
40.00
—
0
6
45
450
1.00
-0.00
2.5
3.1
73.74
47.65
ng/l
0.19
23
263
0
6
0.00
-0.00
0.0
5.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
8.60
—
0
5
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
7
79
0.88
-0.00
2.7
1.3
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_MALE_GENITAL_ORGANS_WIDE – Other congenital malformations of male genital organs
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).