intestinal perforation: Opening or penetration through the wall of the INTESTINES.
Other congenital malformations of intestine
DOID EFO Endpoint Browser PheWeb
Q17_OTHER_CONGEN_MALFO_INTESTINE
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
314 |
4. Check minimum number of eventsNone |
314 |
5. Include endpointsNone |
314 |
6. Filter based on genotype QC (FinnGen only) |
314 |
Control definitions (FinnGen only)
- Control exclude
- Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF4
- Parent code in ICD-10
- Q3[8-9]|Q4[0-5]
- Name in latin
- Aliae malformationes congenitae intestini
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of intestine
based on the number of shared cases.
Similar with more cases:
- Other congenital malformations of the digestive system
- Congenital malformations, deformations and chromosomal abnormalities
- Any event in hilmo or specialist outpatient
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | |||
Whole population | 3727 | 1773 | 1940 |
Only index persons | 3073 | 1448 | 1625 |
Unadjusted period prevalence (%) | |||
Whole population | 0.05 | 0.05 | 0.05 |
Only index persons | 0.06 | 0.05 | 0.06 |
Median age at first event (years) | |||
Whole population | 16.48 | 14.08 | 18.30 |
Only index persons | 23.09 | 22.17 | 23.91 |
-FinnGen-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | 314 | 163 | 151 |
Unadjusted period prevalence (%) | 0.06 | 0.06 | 0.07 |
Median age at first event (years) | 45.77 | 44.18 | 47.49 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 283
- Matched controls
- 2828
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint Q17_OTHER_CONGEN_MALFO_INTESTINE and mortality.
Females
Parameter | HR [95% CI] | p-value |
---|---|---|
Q17_OTHER_CONGEN_MALFO_INTESTINE | 1.262 [1.0, 1.59] | 0.047 |
Birth year | 0.992 [0.98, 1.0] | 0.057 |
During the follow-up period (1.1.1998 — 31.12.2019), 156 out of 1498 females with Q17_OTHER_CONGEN_MALFO_INTESTINE died.
Males
Parameter | HR [95% CI] | p-value |
---|---|---|
Q17_OTHER_CONGEN_MALFO_INTESTINE | 1.574 [1.26, 1.97] | < 0.001 |
Birth year | 0.99 [0.98, 1.0] | 0.035 |
During the follow-up period (1.1.1998 — 31.12.2019), 193 out of 1619 males with Q17_OTHER_CONGEN_MALFO_INTESTINE died.
Mortality risk
Mortality risk for people of age
years, who have Q17_OTHER_CONGEN_MALFO_INTESTINE.N-year risk | Females | Males |
---|---|---|
1 | 0.114% | 0.398% |
5 | 0.63% | 2.107% |
10 | 1.673% | 5.054% |
15 | 3.275% | 9.363% |
20 | 5.698% | 15.628% |
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_INTESTINE – Other congenital malformations of intestine
GWS hits: -