ornithosis: Disease caused by the Chlamydophila psittaci bacteria, usually transmitted from birds to humans.
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
- |
4. Check minimum number of eventsNone |
- |
5. Include endpoints |
443 |
6. Filter based on genotype QC (FinnGen only) |
443 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 2
- First used in FinnGen datafreeze
- DF12
Similar endpoints
↥List of similar endpoints to
Other diseases caused by chlamydiae
based on the number of shared cases.
Similar with more cases:
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
- Any prescribed medicine buy
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 443 | 376 | 67 |
| Unadjusted period prevalence (%) | 0.11 | 0.13 | 0.03 |
| Median age at first event (years) | 25.30 | 22.99 | 38.28 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 399
- Matched controls
- 3989
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
0769C
ICD-9 Finland
Trachoma, unspecified[CHLAMYDIA ENDOMETRITIS ET SALPINGO-OOPHORITIS]
+∞
191.5
168
*
0769X
ICD-9 Finland
Trachoma, unspecified[CHLAMYDIA ALIA DEFINITA SEU NUD]
+∞
86.7
80
*
6350C
ICD-9 Finland
Legally induced abortion, Complicated by genital tract and pelvic infection[ABORTUS PROV LEGAL SINE COMPL,SOSIAALISET SYYT]
6.8
39.5
110
210
H13.1*A74.0
ICD-10 Finland
Chlamydial conjunctivitis
+∞
34.9
33
*
0769A
ICD-9 Finland
Trachoma, unspecified[CHLAMYDIA URETHRITIS]
+∞
30.6
29
*
8513
FHL
Softening of cervix with abortifacient or laminars and associated surgical emptying of the uterus
7.9
25.7
61
89
A74.9
ICD-10 Finland
Chlamydial infection, unspecified
+∞
21.0
20
*
6140A
ICD-9 Finland
Inflammatory disease of ovary, Fallopian tube, pelvic cellular tissue and peritoneum, Acute salpingitis and oophoritis[S-O-ITIS ACUTA]
19.4
19.4
29
16
8511
FHL
Cervical dilation and drainage with suction
5.4
17.1
53
110
0769D
ICD-9 Finland
Trachoma, unspecified[CHLAMYDIA PERIHEPATITIS]
+∞
16.8
16
*
7890A
ICD-9 Finland
Other symptoms involving abdomen and pelvis, Abdominal pain
3.6
10.5
49
151
0981A
ICD-9 Finland
Gonococcal infections, Acute, of upper genito-urinary tract
+∞
9.4
9
*
A70
ICD-10 Finland
Chlamydia psittaci infection
+∞
9.4
9
*
07399
ICD-8 Finland
Psittacosis
+∞
9.4
9
*
R10.3
ICD-10 Finland
Pain localized to other parts of lower abdomen
2.2
9.3
118
649
H10.3
ICD-10 Finland
Acute conjunctivitis, unspecified
3.6
8.5
38
114
EBA05
NOMESCO Finland
Complicated extraction of tooth
2.2
7.8
92
486
F10.1
ICD-10 Finland
Mental and behavioural disorders due to use of alcohol, Harmful use
3.7
7.7
33
96
C03CA01
ATC
furosemide; systemic
2.3
7.4
75
371
N02AX02
ATC
tramadol; systemic, rectal
1.8
7.1
166
1130
A56.0
ICD-10 Finland
Chlamydial infection of lower genitourinary tract
8.5
6.9
14
17
P01AB01
ATC
metronidazole; oral, rectal
1.7
6.7
188
1348
0980A
ICD-9 Finland
Gonococcal infections, Acute, of lower genito-urinary tract
+∞
6.3
6
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
127
806
1.81
6.89
3.5
2.6
0.5
0.4
e6/l
0.08
91
592
89
528
1.86
5.92
2.2
2.0
—
—
—
0
0
57
290
2.11
5.88
2.1
1.9
—
—
—
0
0
154
1086
1.64
5.51
4.4
2.8
—
—
—
0
0
225
1761
1.56
5.08
7.4
5.7
9.1
9.8
umol/l
1.04
218
1686
136
946
1.63
5.07
2.0
2.0
127.1
144.1
u/l
0.50
129
901
47
236
2.11
5.02
1.9
1.8
—
—
—
0
0
76
465
1.77
4.52
2.7
2.3
1.3
1.0
e6/l
0.27
31
248
19
65
3.01
4.50
1.4
1.1
—
—
—
0
0
24
99
2.51
4.04
1.4
1.2
—
—
—
0
0
215
1727
1.48
3.95
4.0
3.0
0.0
0.0
estimate
0.00
41
308
70
435
1.72
3.94
2.8
2.5
1.7
3.8
e6/l
1.87
26
221
93
624
1.62
3.91
2.3
2.8
747.9
670.3
ng/l
0.09
78
511
217
1749
1.47
3.90
4.0
3.0
0.0
0.0
estimate
0.80
42
299
76
486
1.68
3.85
2.0
1.9
—
—
—
0
0
214
1731
1.46
3.72
5.5
4.2
0.0
0.0
estimate
0.50
44
314
144
1080
1.49
3.67
3.4
2.3
56.1
55.4
u/l
0.09
139
1020
33
164
2.09
3.65
2.2
1.8
614.2
2382.5
u/l
—
9
56
223
1839
1.43
3.39
5.7
3.7
6.5
6.4
mmol/l
0.20
213
1721
311
2730
1.47
3.34
9.6
6.8
77.4
75.4
u/l
0.43
295
2583
61
384
1.68
3.28
6.4
2.2
6.2
5.4
umol/l
0.29
49
326
47
279
1.77
3.11
3.1
2.8
—
—
—
0
0
75
519
1.54
2.75
2.1
1.6
1.5
1.4
%
0.81
68
474
397
3724
1.64
2.59
14.9
10.9
139.6
139.7
mmol/l
0.60
389
3626
253
2192
1.36
2.59
5.2
3.7
26.8
84.6
e6/l
—
5
27
28
151
1.91
2.53
1.5
1.7
—
—
—
0
0
111
847
1.41
2.48
2.1
1.7
1.4
0.8
mg/l
1.28
77
651
116
894
1.40
2.44
4.1
3.3
0.0
0.0
estimate
0.50
41
312
143
1143
1.37
2.42
3.8
2.8
28.2
20.3
ng/l
0.70
79
566
397
3738
1.60
2.38
15.1
11.0
3.9
3.9
mmol/l
0.00
387
3635
378
3525
1.49
2.33
12.9
9.5
89.2
87.9
ml/min/173m2
0.69
320
2899
184
1536
1.34
2.33
2.2
2.3
76.6
76.6
nmol/l
0.00
173
1415
87
643
1.44
2.31
1.7
1.6
439.3
21731886.3
pmol/l
0.78
79
566
33
195
1.75
2.26
13.6
7.5
8.0
7.9
mmol/l
0.04
33
187
333
3042
1.38
2.26
4.8
4.3
14.5
14.3
pmol/l
0.58
315
2857
65
457
1.49
2.22
1.3
1.4
32.7
33.2
iu/l
0.03
53
405
66
475
1.46
2.02
1.8
1.7
1352.7
1154.3
nmol/l
1.16
55
369
187
1590
1.30
2.01
4.4
3.6
—
—
—
0
0
163
1363
1.31
1.97
7.3
4.9
1.2
1.2
mmol/l
0.39
156
1242
158
1318
1.31
1.94
6.4
4.1
35.7
36.6
g/l
1.35
151
1245
99
771
1.37
1.94
2.5
2.1
—
—
—
0
0
23
128
1.84
1.93
3.0
1.7
—
—
—
0
0
57
402
1.48
1.93
3.2
2.0
29.8
29.6
s
0.09
57
389
395
3747
1.50
1.91
15.4
10.9
19.4
19.2
mg/l
0.05
321
2867
7
22
3.22
1.88
2.4
1.4
—
—
—
0
0
85
653
1.37
1.81
1.5
1.5
17.7
21.3
nmol/l
2.21
78
573
204
1777
1.27
1.76
2.8
2.7
98.5
84.7
ug/l
0.79
196
1679
152
1279
1.29
1.72
5.2
3.0
36.1
29.7
u/l
1.08
144
1228
31
197
1.62
1.68
1.7
1.6
—
—
—
0
0
344
3212
1.32
1.63
16.7
13.2
13.6
13.5
%
0.52
338
3165
16
84
1.94
1.61
1.7
1.6
—
—
—
0
0
5
15
3.36
1.52
1.0
1.3
—
—
—
0
0
5
15
3.36
1.52
1.0
1.3
—
—
—
0
0
371
3513
1.35
1.51
5.4
4.9
1.7
2.1
mu/l
0.67
350
3321
238
2144
1.24
1.44
10.4
9.3
4.1
3.9
e9/l
0.55
214
1899
350
3297
1.29
1.41
5.0
4.5
38.5
38.4
mmol/mol
0.04
331
3136
12
61
1.99
1.34
1.8
1.5
—
—
—
0
0
296
2743
1.24
1.32
4.7
3.9
10.9
10.1
mm/h
0.50
274
2577
8
34
2.38
1.29
1.0
1.2
—
—
—
0
0
8
34
2.38
1.29
1.0
1.2
—
—
—
0
0
141
1213
1.24
1.28
1.9
1.8
109.9
99.0
pmol/l
0.83
71
650
8
35
2.31
1.27
1.0
1.2
—
—
—
0
0
8
35
2.31
1.27
1.0
1.2
—
—
—
0
0
8
35
2.31
1.27
1.0
1.2
—
—
—
0
0
8
36
2.24
1.25
1.0
1.2
—
—
—
0
0
6
25
2.42
1.24
4.7
1.1
—
—
—
0
0
8
37
2.18
1.22
1.0
1.2
—
—
—
0
0
173
1528
1.22
1.21
8.3
5.9
1.2
1.2
mmol/l
1.08
147
1280
37
267
1.42
1.17
2.3
2.4
63.2
76.4
ml/min/173m2
0.96
14
104
70
561
1.29
1.14
2.8
3.1
112.1
283.9
ng/l
0.56
47
341
55
426
1.33
1.14
2.3
1.8
—
—
—
0
0
105
887
1.24
1.12
1.7
1.5
—
—
—
0
0
37
270
1.40
1.11
2.1
1.7
—
—
—
0
0
13
74
1.78
1.08
3.1
3.8
3.6
4.5
e9/l
1.04
13
74
410
3981
1.40
1.07
11.9
9.2
25.8
25.3
u/l
0.26
398
3884
109
930
1.23
1.06
1.3
1.3
1.2
1.6
u/ml
0.32
42
269
26
367
0.69
1.04
1.3
1.2
288.0
160.0
iu/ml
—
8
164
9
46
1.98
1.04
1.4
1.2
—
—
—
0
0
13
75
1.76
1.04
3.1
4.4
52.8
58.9
%
0.99
13
75
21
140
1.52
0.99
1.7
1.5
—
—
—
0
0
9
49
1.85
0.99
1.2
1.7
—
—
—
0
0
156
1389
1.19
0.97
4.0
3.0
—
—
—
0
0
21
141
1.51
0.96
15.5
8.7
93.2
93.6
%
0.15
21
141
9
51
1.78
0.95
1.9
1.5
35.8
41.3
nmol/l
—
9
51
20
134
1.52
0.93
1.7
1.4
—
—
—
0
0
86
730
1.22
0.88
2.6
2.0
3.5
2.9
mg/l
1.25
77
613
23
161
1.45
0.88
5.3
3.7
0.2
1.9
mmol/l
0.67
15
118
8
43
1.88
0.87
1.0
1.1
—
—
—
0
0
8
44
1.83
0.86
1.6
1.5
—
—
—
0
0
17
113
1.52
0.83
1.4
1.3
1.5
18.6
u/ml
—
5
28
46
368
1.28
0.80
2.6
2.0
354.5
373.3
nmol/l
0.26
41
343
8
48
1.68
0.79
1.4
1.3
—
—
—
0
0
12
74
1.64
0.79
1.3
1.2
—
—
—
0
0
385
3734
1.24
0.78
4.0
3.9
4.9
4.9
mmol/l
0.23
373
3566
368
3556
1.21
0.76
4.2
3.8
5.8
5.7
mmol/l
0.76
345
3350
110
971
1.18
0.75
1.6
1.4
—
—
—
0
0
23
168
1.39
0.73
6.0
3.7
5.1
5.1
kpa
0.05
23
155
287
2724
1.15
0.72
4.2
2.9
56.4
39.2
u/l
0.96
271
2621
31
239
1.32
0.71
3.9
3.5
82.9
70.0
ng/l
0.22
26
214
5
26
1.93
0.71
1.6
1.2
—
—
—
0
0
383
3721
1.22
0.70
4.0
3.9
1.5
1.5
mmol/l
0.50
367
3534
35
276
1.29
0.69
2.1
1.7
—
—
—
0
0
11
69
1.61
0.69
1.0
1.1
—
—
—
0
0
5
27
1.86
0.68
1.2
1.1
—
—
—
0
0
41
503
0.80
0.68
1.8
1.8
—
—
—
0
0
95
836
1.17
0.68
2.8
2.2
308.8
4623.3
umol/l
2.98
85
764
5
28
1.79
0.66
1.0
1.0
—
—
—
0
0
371
3602
1.18
0.64
3.6
3.5
1.4
1.3
mmol/l
1.73
357
3418
10
63
1.60
0.62
4.4
2.6
24.1
24.3
mmol/l
—
10
56
348
3587
0.86
0.61
15.1
11.6
40.4
40.1
%
0.50
276
2958
8
53
1.52
0.58
3.8
3.8
30.0
31.6
mg/l
—
8
43
8
53
1.52
0.58
3.8
3.8
34.8
20.6
mg/l
—
8
41
8
53
1.52
0.58
1.5
1.6
—
—
—
0
0
8
53
1.52
0.58
1.5
1.2
—
—
—
0
0
8
53
1.52
0.58
1.5
1.2
—
—
—
0
0
307
2954
1.13
0.54
3.7
3.4
—
—
—
0
0
33
269
1.25
0.53
10.8
7.0
1.7
1.4
mmol/l
0.11
23
209
9
63
1.44
0.52
1.0
1.3
—
—
—
0
0
15
109
1.39
0.51
1.7
1.3
14.5
15.5
u/l
0.10
15
88
19
144
1.33
0.51
1.3
2.1
—
—
—
0
0
11
75
1.48
0.51
2.4
1.4
—
—
—
0
0
85
760
1.15
0.51
1.3
1.3
2.9
12.3
u/ml
2.63
43
335
16
120
1.35
0.47
1.1
1.2
—
—
—
0
0
32
384
0.82
0.46
4.4
3.7
34.0
32.8
%
0.26
24
278
7
49
1.44
0.46
1.9
1.4
364.6
397.0
pmol/l
—
7
33
10
70
1.44
0.42
2.0
2.6
—
—
—
0
0
0
15
0.00
0.41
0.0
1.5
—
—
—
0
0
0
19
0.00
0.39
0.0
1.1
—
31.6
—
0
19
11
80
1.38
0.38
1.6
1.4
—
—
—
0
0
5
36
1.39
0.38
3.2
1.5
0.9
1.1
g/l
—
5
36
385
3782
1.14
0.38
4.5
4.2
2.9
3.0
mmol/l
0.50
365
3588
26
217
1.21
0.36
1.5
1.4
—
—
—
0
0
99
916
1.10
0.35
1.8
1.7
1.6
1.4
mmol/l
0.87
89
801
14
178
0.78
0.35
3.6
1.8
—
—
—
0
0
32
274
1.18
0.35
1.1
1.2
—
37.8
—
0
14
6
44
1.37
0.34
1.0
1.0
—
—
—
0
0
15
118
1.28
0.34
1.5
1.2
—
—
—
0
0
21
251
0.83
0.32
1.0
1.0
—
—
—
0
0
15
120
1.26
0.30
1.1
1.2
—
—
—
0
0
19
157
1.22
0.30
1.4
1.4
—
—
—
0
0
22
255
0.86
0.25
1.7
1.5
—
—
—
0
0
5
41
1.22
0.22
1.2
1.2
—
—
—
0
0
0
10
0.00
0.21
0.0
1.0
—
—
—
0
0
0
10
0.00
0.21
0.0
1.1
—
—
—
0
0
0
10
0.00
0.21
0.0
1.0
—
99.2
—
0
10
0
10
0.00
0.21
0.0
1.0
—
—
—
0
0
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
11
89
1.24
0.21
1.2
1.0
4.4
2.1
u/ml
—
6
48
11
89
1.24
0.21
1.5
1.6
—
—
—
0
0
0
13
0.00
0.21
0.0
2.2
—
2.4
—
0
6
0
13
0.00
0.21
0.0
1.5
—
—
—
0
0
10
80
1.26
0.20
1.5
1.4
—
—
—
0
0
10
80
1.26
0.20
1.5
1.4
—
—
—
0
0
10
80
1.26
0.20
1.5
1.4
—
—
—
0
0
10
80
1.26
0.20
1.5
1.4
—
—
—
0
0
6
48
1.25
0.20
2.0
1.4
—
—
—
0
0
6
49
1.23
0.20
2.0
1.4
—
—
—
0
0
15
127
1.19
0.20
5.5
2.2
1.5
1.2
%
0.67
15
127
6
50
1.20
0.20
2.2
1.4
—
—
—
0
0
6
50
1.20
0.20
2.2
1.4
—
—
—
0
0
6
50
1.20
0.20
2.0
1.4
—
—
—
0
0
6
50
1.20
0.20
2.0
1.4
—
—
—
0
0
7
58
1.21
0.18
1.0
1.1
—
—
—
0
0
7
58
1.21
0.18
1.0
1.2
—
—
—
0
0
81
768
1.07
0.18
1.3
1.3
14.1
27.5
iu/ml
3.02
25
273
12
101
1.19
0.16
1.4
1.9
—
—
—
0
0
12
101
1.19
0.16
1.4
1.9
3.5
3.8
g/l
—
7
78
8
70
1.15
0.16
1.6
1.3
—
—
—
0
0
58
547
1.07
0.15
2.8
2.7
2.5
2.4
mmol/l
0.95
51
495
13
115
1.13
0.10
1.3
1.1
—
—
—
0
0
11
96
1.15
0.10
1.5
1.2
—
—
—
0
0
40
381
1.05
0.08
7.3
4.5
—
—
—
0
0
14
127
1.11
0.08
2.4
2.1
—
—
—
0
0
33
315
1.05
0.06
14.7
13.4
1.2
1.2
inr
—
6
49
9
104
0.86
0.06
1.3
1.3
367.7
469.5
mg/l
—
9
98
12
109
1.10
0.06
1.6
3.1
36.6
52.0
%
1.02
12
109
13
119
1.10
0.06
1.8
1.9
—
—
—
0
0
27
257
1.05
0.05
1.3
1.4
—
—
—
0
0
15
139
1.08
0.05
1.3
1.6
1.1
1.2
g/l
1.09
15
131
113
1146
0.98
0.04
3.4
3.4
2.4
2.4
mmol/l
0.22
104
1043
11
101
1.09
0.04
1.1
1.1
2.5
2.4
u/ml
—
5
40
29
301
0.96
0.04
2.0
2.4
66.7
36.4
u/ml
0.39
29
286
19
199
0.95
0.03
1.4
1.8
6.1
2.6
mg/l
0.88
11
140
14
134
1.05
0.00
1.3
1.7
0.2
0.2
g/l
1.20
14
128
17
164
1.04
0.00
1.2
1.3
141.2
235.2
miu/ml
—
10
86
26
262
0.99
0.00
4.2
3.8
24.6
21.4
%
0.58
12
115
6
60
1.00
0.00
1.3
1.5
—
—
—
0
0
5
57
0.88
0.00
1.0
1.3
—
—
—
0
0
5
51
0.98
0.00
1.8
3.3
21.2
45.9
u/ml
—
5
51
0
5
0.00
0.00
0.0
1.4
—
—
—
0
0
0
9
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
58.9
—
0
7
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
0.00
0.0
1.0
—
1.2
—
0
9
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
7
72
0.97
0.00
1.0
1.1
—
—
—
0
0
0
5
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
0.00
0.0
2.0
—
—
—
0
0
0
6
0.00
0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
0
9
0.00
0.00
0.0
1.1
—
—
—
0
0
0
8
0.00
0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_OTHER_CHLAMYDIAE – Other diseases caused by chlamydiae
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).