No definition available.
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
519972 |
1. Apply sex-specific ruleNone |
519972 |
2. Check conditionsNone |
519972 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
3 out of 7 registries used, show all original rules. |
344 |
4. Check minimum number of eventsNone |
344 |
5. Include endpointsNone |
344 |
6. Filter based on genotype QC (FinnGen only) |
331 |
Control definitions (FinnGen only)
- Control exclude
- AB1_OTHER_BACTERIAL
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF13
Similar endpoints
↥List of similar endpoints to
Scarlet fever
based on the number of shared cases.
Similar with more cases:
- Other bacterial diseases
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
Similar with less cases:
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
This endpoint is excluded (different definition than used in FinnGen).
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 331 | 193 | 138 |
| Unadjusted period prevalence (%) | 0.07 | 0.07 | 0.06 |
| Median age at first event (years) | 12.98 | 13.11 | 12.79 |
-FinnGen-
Age distribution of first events
-FinnGen-
Year distribution of first events
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 344
- Matched controls
- 3440
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
A38
ICD-10 Finland
Scarlet fever
+∞
185.8
161
*
03419
ICD-8 Finland
Streptococcal sore throat and scarlet fever, Scarlatina NUD
+∞
96.5
88
*
03417
ICD-8 Finland
Streptococcal sore throat and scarlet fever, Scarlatina suspecta
+∞
45.9
43
*
0341A
ICD-9 Finland
Streptococcal sore throat and scarlatina, Scarlatina[SCARLATINA STREPTOCOCCUS BETAHAEMOLYTICUS,RYHMÄ-A]
+∞
16.8
16
*
0341X
ICD-9 Finland
Streptococcal sore throat and scarlatina, Scarlatina[SCARLATINA STREPTOCOCCUS BETAHAEMOLYTICUS,MUU]
+∞
15.7
15
*
A49.9
ICD-10 Finland
Bacterial infection, unspecified
30.2
15.4
20
7
A46
ICD-10 Finland
Erysipelas
5.9
14.1
26
47
A41.9
ICD-10 Finland
Sepsis, unspecified
+∞
9.4
9
*
J02.0
ICD-10 Finland
Streptococcal pharyngitis
4.2
8.8
24
61
03410
ICD-8 Finland
Streptococcal sore throat and scarlet fever, Scarlatina cum complicatione
+∞
8.4
8
*
03400
ICD-8 Finland
Streptococcal sore throat and scarlet fever, Streptococcal sore throat
23.0
6.7
9
*
LabWAS
↥OMOP Concept
People with measurements
Mean N measurements
Mean measured value
(ID) Name
N Cases
N Controls
OR
-log10(p)
cases
controls
cases
controls
unit
-log10(p)
N cases
N controls
21
47
4.69
8.96
1.7
1.6
—
—
—
0
0
41
158
2.81
7.86
2.7
2.3
—
—
—
0
0
16
43
3.85
5.43
2.7
3.7
55.75
55.30
%
0.05
16
43
16
43
3.85
5.43
2.7
3.6
4.01
3.75
e9/l
0.20
16
43
115
791
1.68
4.69
7.9
6.3
1.09
1.11
inr
0.14
46
249
148
1092
1.62
4.55
6.5
5.2
14.29
12.89
umol/l
0.26
139
1041
7
6
11.87
4.29
1.7
1.3
—
—
—
0
0
7
6
11.87
4.29
1.7
1.3
—
—
—
0
0
7
6
11.87
4.29
1.7
1.3
—
—
—
0
0
219
1795
1.61
4.22
7.8
5.9
81.86
81.00
u/l
0.08
209
1693
116
825
1.61
4.05
7.3
4.2
36.56
37.63
g/l
1.16
106
791
10
18
5.69
4.00
1.6
1.6
—
—
—
0
0
11
23
4.90
3.90
1.9
1.6
—
—
—
0
0
226
1889
1.57
3.81
4.8
3.5
8.44
8.26
mm/h
0.12
209
1771
24
103
2.43
3.76
1.5
1.3
—
—
—
0
0
12
30
4.11
3.63
1.8
1.5
—
—
—
0
0
25
113
2.31
3.51
1.6
1.5
—
—
—
0
0
170
1352
1.51
3.48
7.6
5.6
30.55
31.78
%
0.75
165
1300
78
522
1.64
3.42
1.9
2.0
0.89
0.90
mg/l
0.02
56
381
7
10
7.12
3.38
1.6
1.4
—
—
—
0
0
12
34
3.62
3.23
1.8
1.6
—
—
—
0
0
117
874
1.51
3.17
2.0
1.7
—
—
—
0
0
8
16
5.09
3.07
1.9
1.5
—
—
—
0
0
9
21
4.37
3.01
1.3
1.8
—
—
—
0
0
101
748
1.50
2.80
4.3
2.9
—
—
—
0
0
10
28
3.65
2.80
1.6
1.4
—
—
—
0
0
50
314
1.69
2.78
1.7
1.5
481.12
23264332.20
pmol/l
0.50
42
288
11
35
3.21
2.67
7.0
1.4
4.66
4.95
kpa
0.89
11
35
122
946
1.45
2.66
12.3
5.8
1.22
1.22
mmol/l
0.75
112
885
41
248
1.74
2.61
4.6
1.9
2.58
2.53
g/l
0.29
41
236
11
36
3.12
2.59
3.1
1.9
17.76
17.65
%
—
5
22
5
7
7.23
2.55
1.4
1.0
—
—
—
0
0
166
1372
1.41
2.51
5.0
3.9
6.46
6.32
mmol/l
0.28
151
1244
90
665
1.48
2.50
2.0
2.3
53.54
57.42
u/l
0.52
78
630
239
2106
1.44
2.50
4.6
3.7
14.68
14.43
pmol/l
0.85
222
1970
32
183
1.83
2.46
4.5
3.4
0.22
0.23
g/l
0.18
32
178
6
12
5.07
2.41
1.2
1.3
6.60
8.70
umol/l
—
6
12
12
46
2.67
2.38
1.9
1.5
—
—
—
0
0
8
22
3.70
2.38
1.7
1.5
—
—
—
0
0
88
654
1.46
2.37
2.9
2.8
19.45
25.84
ng/l
0.41
47
317
12
47
2.61
2.29
1.9
1.5
—
—
—
0
0
8
23
3.54
2.28
5.5
5.3
83.75
89.48
%
—
8
23
22
114
1.99
2.26
1.5
1.6
—
—
—
0
0
71
517
1.47
2.11
2.7
2.6
4629.30
3016.73
umol/l
0.14
61
477
259
2346
1.42
2.09
11.1
7.3
93.42
93.76
ml/min/173m2
0.09
210
1874
9
31
2.95
2.08
6.0
2.8
9.54
6.79
u/ml
—
9
31
73
536
1.46
2.08
3.0
2.3
2.64
2.74
mg/l
0.19
65
468
79
589
1.44
2.08
4.7
2.7
0.10
0.26
e6/l
1.91
63
426
10
39
2.61
1.95
1.3
1.1
—
—
—
0
0
9
33
2.77
1.94
1.7
1.8
—
—
—
0
0
59
424
1.47
1.87
1.3
1.3
3.36
7.81
u/ml
1.12
22
179
87
673
1.39
1.85
3.8
2.5
2.35
2.37
mmol/l
0.46
79
612
119
970
1.35
1.83
3.4
2.5
74.23
73.05
nmol/l
0.21
110
906
19
102
1.91
1.80
1.7
2.6
62.84
68.09
g/l
1.92
19
97
306
2889
1.54
1.72
11.1
7.7
28.66
28.22
u/l
0.14
294
2811
40
270
1.54
1.71
5.0
3.2
7.75
5.96
umol/l
0.36
34
229
285
2656
1.43
1.70
14.5
8.6
139.51
139.69
mmol/l
0.84
277
2585
61
451
1.43
1.68
1.4
1.3
24.15
26.92
iu/ml
0.08
20
145
39
263
1.54
1.67
1.7
1.6
—
—
—
0
0
179
1563
1.30
1.65
9.1
7.7
3.91
3.83
e9/l
0.16
166
1340
17
91
1.91
1.63
1.5
1.5
—
—
—
0
0
136
1148
1.31
1.60
2.7
2.2
—
—
—
0
0
7
26
2.73
1.59
1.1
1.1
—
—
—
0
0
7
26
2.73
1.59
1.0
1.2
—
—
—
0
0
6
20
3.03
1.58
1.0
1.2
—
—
—
0
0
34
226
1.56
1.56
2.1
1.5
1401.76
1099.63
nmol/l
1.31
29
178
29
187
1.60
1.51
1.5
1.4
—
—
—
0
0
56
417
1.41
1.49
1.6
1.3
21.10
20.26
nmol/l
0.17
49
374
124
1044
1.29
1.47
12.5
5.7
1.22
1.22
mmol/l
0.43
102
907
31
207
1.55
1.41
3.1
2.4
11314.71
4984.60
u/l
0.26
15
86
284
2669
1.37
1.40
14.8
8.7
3.94
3.94
mmol/l
0.04
274
2586
29
191
1.57
1.40
1.6
1.5
—
—
—
0
0
42
302
1.45
1.35
1.7
1.5
—
—
—
0
0
43
311
1.44
1.35
9.1
3.9
0.81
0.82
mmol/l
0.40
38
299
9
42
2.17
1.34
1.0
2.3
—
—
—
0
0
47
347
1.41
1.32
3.9
2.7
2.32
2.59
e6/l
0.10
28
185
81
653
1.31
1.31
4.9
3.1
0.00
0.00
estimate
0.50
32
244
9
44
2.07
1.27
1.0
2.0
—
—
—
0
0
8
35
2.32
1.27
1.0
2.0
0.00
0.00
g/l
—
8
35
8
35
2.32
1.27
1.0
2.0
0.00
0.00
g/l
—
8
35
264
2468
1.30
1.25
3.8
3.7
—
—
—
0
0
6
25
2.42
1.25
1.2
1.4
—
120.00
—
0
6
68
541
1.32
1.21
2.6
1.8
—
—
—
0
0
8
38
2.13
1.19
1.0
1.2
—
—
—
0
0
11
57
1.96
1.18
1.2
1.2
4.80
2.79
u/ml
—
5
19
10
50
2.03
1.17
1.2
1.1
—
—
—
0
0
21
134
1.60
1.17
1.7
1.7
—
—
—
0
0
8
39
2.08
1.16
1.0
2.1
0.00
1.13
g/l
—
8
39
8
39
2.08
1.16
1.0
2.0
0.00
0.00
g/l
—
8
39
14
80
1.78
1.14
1.1
1.1
—
—
—
0
0
19
119
1.63
1.14
1.2
1.3
—
—
—
0
0
7
31
2.28
1.11
1.0
1.2
—
—
—
0
0
263
2475
1.27
1.07
5.3
4.2
1.73
2.27
mu/l
0.59
248
2345
87
730
1.26
1.03
1.7
1.7
95.05
95.89
pmol/l
0.05
45
374
270
2554
1.27
1.01
16.6
10.9
13.82
14.08
%
0.52
264
2522
21
140
1.53
1.00
1.5
1.6
—
—
—
0
0
9
49
1.86
0.99
1.0
1.1
112.67
114.05
%
—
9
44
5
23
2.19
0.98
1.0
1.3
134.70
197.11
pmol/l
—
5
23
39
296
1.36
0.96
3.1
2.2
2.39
2.41
mmol/l
0.70
34
262
7
37
1.91
0.94
1.4
1.4
—
—
—
0
0
142
1271
1.20
0.90
5.6
4.0
0.00
0.00
estimate
-0.00
34
251
33
248
1.37
0.87
1.3
1.3
175.46
174.52
iu/ml
0.00
14
94
6
30
2.02
0.87
1.3
1.1
—
—
—
0
0
30
223
1.38
0.85
18.7
4.9
0.53
1.05
mmol/l
0.37
23
143
22
155
1.45
0.83
2.1
1.5
261.41
312.04
mu/l
0.42
22
141
143
1288
1.19
0.83
4.3
2.9
0.09
0.00
estimate
0.49
35
235
8
46
1.76
0.83
1.6
1.1
—
—
—
0
0
141
1269
1.19
0.82
4.3
2.8
0.00
0.00
estimate
-0.00
35
255
14
89
1.60
0.82
2.2
1.5
—
—
—
0
0
0
24
0.00
0.79
0.0
1.0
—
—
—
0
0
18
123
1.49
0.79
1.2
1.1
—
—
—
0
0
74
631
1.22
0.77
1.6
1.6
1.53
1.43
mmol/l
0.34
67
567
6
34
1.78
0.76
1.3
1.2
—
—
—
0
0
5
24
2.10
0.75
1.0
1.2
—
—
—
0
0
5
25
2.01
0.73
1.0
1.2
—
—
—
0
0
5
25
2.01
0.73
1.0
1.2
—
—
—
0
0
5
25
2.01
0.73
1.0
1.2
—
—
—
0
0
5
25
2.01
0.73
1.0
1.2
—
—
—
0
0
111
989
1.18
0.72
4.2
2.8
—
—
—
0
0
62
523
1.23
0.71
1.5
1.5
—
—
—
0
0
44
357
1.27
0.71
4.0
2.5
0.22
0.88
e6/l
3.27
25
194
13
85
1.55
0.70
2.3
1.5
251.29
214.57
u/ml
—
7
49
29
371
0.76
0.68
1.4
1.6
—
—
—
0
0
25
324
0.75
0.65
1.8
2.2
0.66
0.63
ug/l
—
9
152
287
2772
1.21
0.64
14.0
8.7
22.00
19.56
mg/l
0.59
232
2028
5
29
1.73
0.64
2.4
1.6
—
—
—
0
0
5
29
1.73
0.64
3.4
3.1
14.00
20.79
u/ml
—
5
29
5
29
1.73
0.64
2.4
1.6
—
—
—
0
0
92
815
1.18
0.64
1.5
1.4
2.94
1.32
u/ml
0.28
24
211
39
317
1.26
0.63
1.5
2.0
—
—
—
0
0
8
49
1.65
0.62
1.5
1.1
—
—
—
0
0
8
52
1.55
0.60
3.1
3.1
23.47
23.46
mmol/l
—
8
52
42
348
1.24
0.58
3.3
3.4
1158.79
574.37
ng/l
0.50
35
279
47
396
1.22
0.56
1.6
2.0
—
—
—
0
0
6
37
1.63
0.56
2.2
2.2
—
—
—
0
0
12
82
1.48
0.55
2.3
1.4
—
—
—
0
0
230
2197
1.14
0.53
4.4
4.0
38.03
38.03
mmol/mol
0.00
214
2104
13
92
1.43
0.51
1.6
1.9
—
—
—
0
0
22
174
1.28
0.46
2.0
2.3
70.88
81.91
ml/min/173m2
—
8
74
8
57
1.41
0.42
1.0
1.0
—
—
—
0
0
5
32
1.57
0.42
1.8
1.5
—
—
—
0
0
10
70
1.44
0.42
1.0
1.4
—
—
—
0
0
0
16
0.00
0.41
0.0
9.1
—
56.00
—
0
6
8
59
1.36
0.41
1.4
1.8
—
—
—
0
0
40
344
1.18
0.41
2.0
3.0
746.35
412.17
ng/l
0.28
23
206
0
17
0.00
0.40
0.0
1.0
—
—
—
0
0
5
36
1.39
0.38
2.4
1.5
—
—
—
0
0
5
36
1.39
0.38
2.4
1.5
—
—
—
0
0
26
216
1.22
0.38
3.7
6.0
—
—
—
0
0
8
113
0.70
0.38
1.4
1.4
—
—
—
0
0
5
37
1.36
0.37
1.4
1.9
—
—
—
0
0
9
71
1.27
0.36
2.1
1.5
—
—
—
0
0
259
2520
1.11
0.34
3.8
3.6
4.66
4.75
mmol/l
0.87
242
2417
17
136
1.26
0.34
1.1
1.2
13.50
4.72
u/ml
—
10
88
202
1944
1.09
0.33
3.9
3.0
40.02
39.78
u/l
0.02
190
1877
26
221
1.19
0.31
5.7
5.4
102.69
104.68
mmol/l
0.95
26
221
8
106
0.75
0.29
10.6
9.3
1.40
1.47
%
—
8
106
8
62
1.30
0.28
1.4
1.8
—
—
—
0
0
18
150
1.21
0.27
1.7
1.7
—
—
—
0
0
55
505
1.11
0.25
3.8
3.6
8.73
7.09
mg/mmol
0.13
35
352
12
96
1.26
0.25
1.2
1.4
—
—
—
0
0
6
84
0.71
0.24
1.0
1.2
—
—
—
0
0
6
85
0.70
0.24
1.0
1.2
—
—
—
0
0
0
11
0.00
0.21
0.0
1.2
—
—
—
0
0
0
11
0.00
0.21
0.0
1.5
—
—
—
0
0
8
105
0.76
0.21
11.0
9.4
0.80
0.74
%
—
8
105
0
12
0.00
0.21
0.0
1.2
—
—
—
0
0
0
12
0.00
0.21
0.0
2.3
—
—
—
0
0
0
12
0.00
0.21
0.0
1.5
—
—
—
0
0
11
89
1.24
0.21
1.1
1.1
—
13.96
—
0
5
0
13
0.00
0.21
0.0
1.1
—
—
—
0
0
13
155
0.83
0.20
2.5
1.8
—
—
—
0
0
133
1279
1.07
0.20
3.8
2.6
130.32
83.04
ug/l
0.65
125
1217
6
48
1.25
0.20
1.2
1.2
—
—
—
0
0
6
48
1.25
0.20
1.2
1.2
—
—
—
0
0
9
111
0.81
0.20
1.8
1.6
—
—
—
0
0
0
14
0.00
0.20
0.0
1.1
—
219.15
—
0
14
6
49
1.23
0.20
1.2
1.2
—
—
—
0
0
6
51
1.18
0.19
3.0
4.6
297.33
375.60
umol/l
—
6
45
247
2424
1.07
0.19
3.4
3.2
1.38
1.29
mmol/l
0.88
232
2309
18
156
1.16
0.19
1.7
1.4
—
—
—
0
0
18
156
1.16
0.19
1.7
1.4
—
—
—
0
0
18
156
1.16
0.19
1.7
1.4
—
—
—
0
0
10
81
1.24
0.19
3.6
4.3
0.77
0.70
%
—
10
81
18
204
0.88
0.16
1.2
1.3
—
—
—
0
0
247
2510
0.94
0.16
3.8
3.5
1.42
1.45
mmol/l
0.56
233
2401
5
45
1.11
0.10
1.4
1.4
—
—
—
0
0
64
616
1.05
0.09
2.3
2.2
—
—
—
0
0
19
174
1.10
0.09
1.7
1.5
—
—
—
0
0
13
116
1.13
0.09
1.0
1.1
0.89
2.14
u/ml
—
6
76
323
3213
1.09
0.09
19.7
13.1
40.52
40.99
%
0.89
313
3080
17
156
1.09
0.08
1.8
1.4
—
—
—
0
0
323
3216
1.07
0.07
19.6
13.1
259.96
259.47
e9/l
0.05
315
3136
238
2399
0.97
0.06
3.6
3.4
5.76
5.69
mmol/l
0.34
218
2255
11
100
1.10
0.05
1.2
1.3
—
—
—
0
0
323
3220
1.05
0.03
19.6
13.0
4.56
4.62
e12/l
1.64
315
3133
254
2532
1.01
0.01
4.0
3.8
2.82
2.89
mmol/l
0.61
236
2413
22
222
0.99
0.00
1.0
1.0
—
—
—
0
0
10
105
0.95
0.00
2.2
2.2
0.10
0.09
e6/l
—
10
97
16
155
1.03
0.00
1.2
1.6
3.02
3.72
mg/l
0.27
11
106
21
205
1.03
0.00
1.8
1.4
—
—
—
0
0
68
675
1.01
0.00
2.5
2.3
—
—
—
0
0
16
156
1.03
0.00
1.4
1.4
274.77
285.21
miu/ml
—
6
89
45
446
1.01
0.00
1.7
1.8
1.30
1.35
%
0.28
38
423
0
6
0.00
-0.00
0.0
1.2
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.2
—
—
—
0
0
7
79
0.88
-0.00
2.7
1.8
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.2
—
20.62
—
0
6
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
3.0
—
4.96
—
0
5
0
6
0.00
-0.00
0.0
2.2
—
25.33
—
0
6
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.6
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.3
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
6
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
9
0.00
-0.00
0.0
2.1
—
—
—
0
0
0
8
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
7
0.00
-0.00
0.0
1.0
—
—
—
0
0
0
5
0.00
-0.00
0.0
1.0
—
—
—
0
0
Mortality – FinRegistry
↥This endpoint is excluded (different definition than used in FinnGen).
Relationships between endpoints
↥Index endpoint: AB1_SCARLET_FEVER_WIDE – Scarlet fever
GWS hits: -
This endpoint is excluded (different definition than used in FinnGen).