No definition available.
Viral infections of central nervous system, not elsewhere classified/unspecified
AB1_VIRAN_CNS_INFECTIONS_NOS
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
|---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
418 |
4. Check minimum number of eventsNone |
418 |
5. Include endpointsNone |
418 |
6. Filter based on genotype QC (FinnGen only) |
418 |
Control definitions (FinnGen only)
- Control exclude
- AB1_VIRAL_CNS
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF5
Similar endpoints
↥List of similar endpoints to
Viral infections of central nervous system, not elsewhere classified/unspecified
based on the number of shared cases.
Similar with more cases:
- Viral infections of the central nervous system
- Certain infectious and parasitic diseases
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥
Summary Statistics
↥-FinRegistry-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | |||
| Whole population | 3558 | 1691 | 1843 |
| Only index persons | 3046 | 1465 | 1581 |
| Unadjusted period prevalence (%) | |||
| Whole population | 0.05 | 0.05 | 0.05 |
| Only index persons | 0.06 | 0.05 | 0.06 |
| Median age at first event (years) | |||
| Whole population | 27.63 | 30.29 | 24.76 |
| Only index persons | 25.73 | 28.93 | 22.76 |
-FinnGen-
Key figures
| All | Female | Male | |
|---|---|---|---|
| Number of individuals | 418 | 238 | 180 |
| Unadjusted period prevalence (%) | 0.08 | 0.08 | 0.08 |
| Median age at first event (years) | 28.90 | 30.24 | 27.13 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
No data
-FinnGen-
Cumulative Incidence Function
No data
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 384
- Matched controls
- 3838
Code
Vocabulary
Description
Odds Ratio
-log10(p)
N matched cases
N matched controls
0499X
ICD-9 Finland
Other non-arthropod-borne viral diseases of central nervous system, Unspecified non-arthropod-borne viral diseases of central nervous system
+∞
323.0
277
*
A89
ICD-10 Finland
Unspecified viral infection of central nervous system
+∞
42.5
40
*
0498X
ICD-9 Finland
Other non-arthropod-borne viral diseases of central nervous system, Other specified non-arthropod-borne viral diseases of central nervous system
+∞
37.1
35
*
A87.9
ICD-10 Finland
Viral meningitis, unspecified
+∞
15.7
15
*
04699
ICD-8 Finland
Other enterovirus diseases of central nervous system
+∞
12.6
12
*
A88.1
ICD-10 Finland
Epidemic vertigo
+∞
10.5
10
*
3229X
ICD-9 Finland
Meningitis of unspecified cause, Meningitis, unspecified
+∞
10.5
10
*
G02.0*B00.3
ICD-10 Finland
Herpesviral meningitis
+∞
9.4
9
*
7840A
ICD-9 Finland
Symptoms involving head and neck, Headache
9.8
8.4
16
17
R51.80
ICD-10 Finland
Headache
2.5
8.0
67
302
TAB00
NOMESCO Finland
Lumbar puncture
4.4
7.8
27
65
AA1AD
NOMESCO Finland
CT of head and brain
2.2
7.3
85
448
J05AB11
ATC
valaciclovir; oral
2.3
6.4
58
274
A86
ICD-10 Finland
Unspecified viral encephalitis
+∞
6.3
6
*
N02AX02
ATC
tramadol; systemic, rectal
1.7
6.2
160
1114
R42
ICD-10 Finland
Dizziness and giddiness
2.0
6.2
79
432
R49.01
ICD-10 Finland
Functional dysphonia
5.3
6.1
17
33
Mortality – FinRegistry
↥Association
Association between endpoint AB1_VIRAN_CNS_INFECTIONS_NOS and mortality.
Females
No dataMales
No dataMortality risk
Mortality risk for people of age
years, who have AB1_VIRAN_CNS_INFECTIONS_NOS.| N-year risk | Females | Males |
|---|---|---|
| 1 | No data | No data |
| 5 | No data | No data |
| 10 | No data | No data |
| 15 | No data | No data |
| 20 | No data | No data |
Relationships between endpoints
↥Index endpoint: AB1_VIRAN_CNS_INFECTIONS_NOS – Viral infections of central nervous system, not elsewhere classified/unspecified
GWS hits: -
Endpoint
Case Overlap
Survival Analysis
Genetic Correlations
Genetic Signals
N (Jaccard index)
HR [CI]
Extremity
rg [CI]
Extremity
Hits
Coloc Hits
FinRegistry
FinnGen
FinRegistry
FinnGen
FinnGen
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