brain neoplasm: A neoplasm (disease) that involves the brain.
Melanocytic naevi of scalp and neck
DOID EFO Endpoint Browser PheWeb
CD2_BENIGN_MELANOCYTIC_SCALPNECK
Endpoint definition
↥
Endpoint definition steps |
FinnGen |
---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters:
2 out of 7 registries used, show all original rules. |
902 |
4. Check minimum number of eventsNone |
902 |
5. Include endpointsNone |
902 |
6. Filter based on genotype QC (FinnGen only) |
902 |
Control definitions (FinnGen only)
Controls for this endpoint are individuals that are not cases.
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF2
- Parent code in ICD-10
- D22
- Name in latin
- Naevus melanocyticus (cutis) verticis cranii
Similar endpoints
↥List of similar endpoints to Melanocytic naevi of scalp and neck based on the number of shared cases.
Similar with more cases:
- Melanocytic naevi of scalp and neck
- Melanocytic naevi
- Melanocytic naevi
- Benign neoplasms
- Benign neoplasms
Similar with less cases:
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | |||
Whole population | 6814 | 3784 | 3011 |
Only index persons | 6315 | 3553 | 2762 |
Unadjusted period prevalence (%) | |||
Whole population | 0.10 | 0.11 | 0.08 |
Only index persons | 0.12 | 0.13 | 0.11 |
Median age at first event (years) | |||
Whole population | 35.03 | 34.26 | 35.95 |
Only index persons | 36.18 | 35.14 | 37.52 |
-FinnGen-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | 902 | 559 | 343 |
Unadjusted period prevalence (%) | 0.18 | 0.19 | 0.15 |
Median age at first event (years) | 47.24 | 41.58 | 56.47 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 803
- Matched controls
- 8029
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint CD2_BENIGN_MELANOCYTIC_SCALPNECK and mortality.
Females
Parameter | HR [95% CI] | p-value |
---|---|---|
CD2_BENIGN_MELANOCYTIC_SCALPNECK | 0.786 [0.65, 0.95] | 0.011 |
Birth year | 0.992 [0.98, 1.0] | 0.06 |
During the follow-up period (1.1.1998 — 31.12.2019), 169 out of 3036 females with CD2_BENIGN_MELANOCYTIC_SCALPNECK died.
Males
Parameter | HR [95% CI] | p-value |
---|---|---|
CD2_BENIGN_MELANOCYTIC_SCALPNECK | 1.089 [0.92, 1.3] | 0.336 |
Birth year | 0.983 [0.97, 0.99] | < 0.001 |
During the follow-up period (1.1.1998 — 31.12.2019), 295 out of 2431 males with CD2_BENIGN_MELANOCYTIC_SCALPNECK died.
Mortality risk
Mortality risk for people of age
years, who have CD2_BENIGN_MELANOCYTIC_SCALPNECK.N-year risk | Females | Males |
---|---|---|
1 | 0.068% | 0.168% |
5 | 0.421% | 1.092% |
10 | 1.019% | 2.71% |
15 | 1.971% | 5.418% |
20 | 3.539% | 9.434% |
Relationships between endpoints
↥Index endpoint: CD2_BENIGN_MELANOCYTIC_SCALPNECK – Melanocytic naevi of scalp and neck
GWS hits: 1