No definition available.
Other congenital malformations of tongue, mouth and pharynx
EFO MESH Endpoint Browser PheWeb
Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX
Endpoint definition
↥Report an error or suggest an improvement for this endpoint codes
Endpoint definition steps |
FinnGen |
---|---|
Phenotype data |
520210 |
1. Apply sex-specific ruleNone |
520210 |
2. Check conditionsNone |
520210 |
3. Check pre-conditions, main-only, mode, registry filtersRegistry filters: 2 out of 7 registries used, show all original rules. |
565 |
4. Check minimum number of eventsNone |
565 |
5. Include endpointsNone |
565 |
6. Filter based on genotype QC (FinnGen only) |
565 |
Control definitions (FinnGen only)
- Control exclude
- Q17_OTHER_CONGEN_MALFO_DIGES_SYSTEM1
Extra metadata
- Level in the ICD hierarchy
- 3
- First used in FinnGen datafreeze
- DF4
- Parent code in ICD-10
- Q3[8-9]|Q4[0-5]
- Name in latin
- Aliae malformationes congenitae linguae, oris et pharyngis
Similar endpoints
↥List of similar endpoints to
Other congenital malformations of tongue, mouth and pharynx
based on the number of shared cases.
Similar with more cases:
- Other congenital malformations of the digestive system
- Congenital malformations, deformations and chromosomal abnormalities
- Any event in hilmo or specialist outpatient
Similar with less cases:
None
Case counts by codes
↥Summary Statistics
↥-FinRegistry-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | |||
Whole population | 23446 | 7345 | 16093 |
Only index persons | 13649 | 4330 | 9319 |
Unadjusted period prevalence (%) | |||
Whole population | 0.37 | 0.21 | 0.45 |
Only index persons | 0.29 | 0.16 | 0.36 |
Median age at first event (years) | |||
Whole population | 4.11 | 4.22 | 4.05 |
Only index persons | 5.22 | 5.35 | 5.16 |
-FinnGen-
Key figures
All | Female | Male | |
---|---|---|---|
Number of individuals | 565 | 292 | 273 |
Unadjusted period prevalence (%) | 0.11 | 0.10 | 0.12 |
Median age at first event (years) | 6.67 | 7.79 | 5.47 |
-FinRegistry-
Age distribution of first events
-FinnGen-
Age distribution of first events
-FinRegistry-
Year distribution of first events
-FinnGen-
Year distribution of first events
-FinRegistry-
Cumulative Incidence Function
-FinnGen-
Cumulative Incidence Function
CodeWAS (R11)
↥CodeWAS is a tool for exploring the associations between an endpoint and all of the medical codes and drug codes.
This is a new tool, please reach out using the contact form for feedback and improvement ideas.
First, a cohort is built by matching controls to the endpoint cases using year of birth and sex. Then, a Fisher test is done for all the medical codes and drug codes between the cases and controls of this cohort. Codes are reported in the table below if they have −log10(p-value) ≥ 6.
Matched cohort
- Matched cases
- 477
- Matched controls
- 4754
LabWAS
↥Mortality – FinRegistry
↥Association
Association between endpoint Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX and mortality.
Females
No dataMales
Parameter | HR [95% CI] | p-value |
---|---|---|
Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX | 1.047 [0.75, 1.46] | 0.786 |
Birth year | 0.989 [0.98, 1.0] | 0.023 |
During the follow-up period (1.1.1998 — 31.12.2019), 75 out of 14267 males with Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX died.
Mortality risk
Mortality risk for people of age
years, who have Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX.N-year risk | Females | Males |
---|---|---|
1 | No data | 0.197% |
5 | No data | 1.328% |
10 | No data | 3.426% |
15 | No data | 6.658% |
20 | No data | 11.252% |
Relationships between endpoints
↥Index endpoint: Q17_OTHER_CONGEN_MALFO_TONGUE_MOUTH_PHARYNX – Other congenital malformations of tongue, mouth and pharynx
GWS hits: 1